scholarly journals Shifts in Bacterial Community Associated with Green Manure Soybean Intercropping and Edaphic Properties in a Tea Plantation

2021 ◽  
Vol 13 (20) ◽  
pp. 11478
Author(s):  
Fo-Ting Shen ◽  
Shih-Han Lin
Keyword(s):  
Organic Matter ◽  
Bacterial Communities ◽  
Green Manure ◽  
Biological Properties ◽  
Population Diversity ◽  
Plant Growth Promoting Bacteria ◽  
Plant Interactions ◽  
Metabolic Potential ◽  
Tea Plantation ◽  
Edaphic Properties

The continuous cultivation with excessive application of agrochemicals has led to the deterioration of soils. Incorporating leguminous green manure (GM) was found to improve the physicochemical and biological properties of soils. However, the influence of GM soybean intercropping on the temporal distribution of bacterial communities in strongly acidic soils is less explored. In this study, a nine-month field trial of soybean intercropping was conducted in a deteriorated tea plantation. This was used to test the hypothesis that GM treatment ameliorates tea-cultivated environments through changing bacterial communities as well as edaphic properties. GM treatment was demonstrated to increase both functional and population diversity during all the months that were considered. An alteration of life strategies exhibited by bacterial communities in GM treatment was observed, which shifted from oligotrophy (Acidobacteria, Chloroflexi, and the candidate phylum WPS-2) to copiotrophy (Bacteroidetes and Proteobacteria). This also contributed to the remarkable increase in metabolic potential of bacterial communities toward all six carbon source categories. The potentially versatile organic matter decomposers and/or plant growth-promoting bacteria, such as Burkholderiaceae, Chitinophagaceae, Sphingobacteriaceae, and Sphingomonadaceae bacteria, were identified as the most effective biomarkers in GM treatment. These bacterial groups showed strong correlation with soil pH; organic matter; and available K, Ca, and Mg. The increased diversity, metabolic potential, and copiotrophic taxa provided insight into the benefits brought by soybean intercropping, with enhanced community stability, facilitated nutrient cycling, and microbe–plant interactions in the strongly acidic tea plantation.

scholarly journals Priming Effects of Cover Cropping on Bacterial Community in a Tea Plantation

2021 ◽  
Vol 13 (8) ◽  
pp. 4345
Author(s):  
Fo-Ting Shen ◽  
Shih-Han Lin
Keyword(s):  
Bacterial Community ◽  
Bacterial Communities ◽  
Management Practices ◽  
Amplicon Sequencing ◽  
Community Diversity ◽  
Plant Growth Promoting Bacteria ◽  
Metabolic Potential ◽  
Tea Plantation ◽  
Cover Cropping ◽  
Tea Plantations

The acidic nature of red soil commonly found in tea plantations provides unique niches for bacterial growth. These bacteria as well as soil properties are dynamic and vary with agricultural management practices. However, less is known about the influence of manipulation such as cover cropping on bacterial communities in tea plantations. In this study a field trial was conducted to address the short-term effects of soybean intercropping on a bacterial community. Diversity, metabolic potential and structure of the bacterial community were determined through community level physiological profiling and amplicon sequencing approaches. Cover cropping was observed to increase soil EC, available P, K, and microelements Fe, Mn, Cu, and Zn after three months of cultivation. Bacterial functional diversity and metabolic potential toward six carbon source categories also increased in response to cover cropping. Distinct bacterial communities among treatments were revealed, and the most effective biomarkers, such as Acidobacteriaceae, Burkholderiaceae, Rhodanobacteraceae, and Sphingomonadaceae, were identified in cover cropping. Members belonging to these families are considered as organic matter decomposers and/or plant growth promoting bacteria. We provided the first evidence that cover cropping boosted both copiotrophs (Proteobacteria) and oligotrophs (Acidobacteria), with potentially increased functional stability, facilitated nutrient cycling, and prospective benefits to plants in the tea plantation.

scholarly journals A Degeneration Gradient of Poplar Trees Contributes to the Taxonomic, Functional, and Resistome Diversity of Bacterial Communities in Rhizosphere Soils

2021 ◽  
Vol 22 (7) ◽  
pp. 3438
Author(s):  
Juan Liu ◽  
Xiangwei He ◽  
Jingya Sun ◽  
Yuchao Ma
Keyword(s):  
Soil Fertility ◽  
Microbial Diversity ◽  
Resistance Genes ◽  
Bacterial Communities ◽  
Rhizosphere Soil ◽  
Antibiotics Resistance ◽  
Plant Growth Promoting Bacteria ◽  
Soil Microbial Diversity ◽  
Antibiotic Target ◽  
And Function

Bacterial communities associated with roots influence the health and nutrition of the host plant. However, the microbiome discrepancy are not well understood under different healthy conditions. Here, we tested the hypothesis that rhizosphere soil microbial diversity and function varies along a degeneration gradient of poplar, with a focus on plant growth promoting bacteria (PGPB) and antibiotic resistance genes. Comprehensive metagenomic analysis including taxonomic investigation, functional detection, and ARG (antibiotics resistance genes) annotation revealed that available potassium (AK) was correlated with microbial diversity and function. We proposed several microbes, Bradyrhizobium, Sphingomonas, Mesorhizobium, Nocardioides, Variovorax, Gemmatimonadetes, Rhizobacter, Pedosphaera, Candidatus Solibacter, Acidobacterium, and Phenylobacterium, as candidates to reflect the soil fertility and the plant health. The highest abundance of multidrug resistance genes and the four mainly microbial resistance mechanisms (antibiotic efflux, antibiotic target protection, antibiotic target alteration, and antibiotic target replacement) in healthy poplar rhizosphere, corroborated the relationship between soil fertility and microbial activity. This result suggested that healthy rhizosphere soil harbored microbes with a higher capacity and had more complex microbial interaction network to promote plant growing and reduce intracellular levels of antibiotics. Our findings suggested a correlation between the plant degeneration gradient and bacterial communities, and provided insight into the role of high-turnover microbial communities as well as potential PGPB as real-time indicators of forestry soil quality, and demonstrated the inner interaction contributed by the bacterial communities.

RESTORING PRODUCTIVITY TO AN ARTIFICIALLY ERODED DARK BROWN CHERNOZEMIC SOIL UNDER DRYLAND CONDITIONS

1986 ◽  
Vol 66 (2) ◽  
pp. 273-285 ◽  
Author(s):  
J. F. DORMAAR ◽  
C. W. LINDWALL ◽  
G. C. KOZUB
Keyword(s):  
Organic Matter ◽  
Soil Erosion ◽  
Green Manure ◽  
Soil Structure ◽  
Management Practices ◽  
Fertilizer Application ◽  
Sweet Clover ◽  
Yield Losses ◽  
Critical Factors ◽  
Structure Characteristics

A field was artificially eroded by levelling in 1957 and then continuously cropped to barley for 7 yr. Subsequently, a wheat-fallow experiment was conducted from 1965 to 1979 to determine the effects of four fertilizer treatments and green manure (yellow sweet clover) on restoring the productivity to soil that had been "eroded" to various depths. After 22 yr and 14 crops, the productivity of the land from which soil was removed has been improved but not fully restored. Although green manuring with yellow sweet clover improved soil structure, wheat yields were not improved because of competition for soil moisture and poorer in-crop weed control in this part of the rotation. The addition of 45 kg N plus 90 kg P2O5 per hectare in each crop year to sites from which 8–10, 10–20, or 46 + cm of soil had been removed resulted in yield increases of 18, 46, and 70%, respectively, over the unfertilized check of each treatment; the average yields were 104, 91, and 70%, respectively, of the undisturbed, unfertilized (check) treatment. On "erosion" treatments where only 8–10 cm of soil were removed, 45 kg N plus 22 kg P2O5 per hectare were sufficient to restore the productivity. Precipitation apparently had a greater effect than fertilizer application on wheat yields. The loss of organic matter and associated soil structure characteristics seemed to be critical factors contributing to yield losses associated with soil erosion. These results show that it is more practical to use management practices that prevent soil erosion than to adopt the practices required to restore eroded soil. Key words: Soil erosion, topsoil loss, water-stable aggregates, soil organic matter, green manure, precipitation

scholarly journals Effect of Environmental Factors and Influence of Rumen and Hindgut Biogeography on Bacterial Communities in Steers

2010 ◽  
Vol 77 (1) ◽  
pp. 258-268 ◽  
Author(s):  
Gustavo A. Romero-Pérez ◽  
Kim H. Ominski ◽  
Tim A. McAllister ◽  
Denis O. Krause
Keyword(s):  
Ambient Temperature ◽  
Bacterial Communities ◽  
Volatile Fatty Acids ◽  
Principal Component ◽  
Population Diversity ◽  
Access Time ◽  
Sample Type ◽  
Bacterial Populations ◽  
Fecal Samples ◽  
Alfalfa Silage

ABSTRACTFeces from cattle production are considered important sources of bacterial contamination of food and the environment. Little is known about the combined effects of arctic temperatures and fodder tannins on rumen and hindgut bacterial populations. Individual rumen liquor and rectal fecal samples from donor steers fed either alfalfa silage or sainfoin (Onobrychis viciifoliaScop.) silage and waterad libitumwere collected weekly on the first three sampling days and fortnightly afterwards. The daily ambient temperatures were registered and averaged to weekly mean temperatures. Steers fed sainfoin silage had lower (P< 0.05) concentrations of branched-chain volatile fatty acids (VFA) than those fed alfalfa silage. All VFA concentrations were higher (P< 0.001) in rumen liquor samples than in fecal samples. The interaction of sample type and diet showed a significant effect (P< 0.05) on the proportions of the bacterial community that were from the phylaProteobacteriaandVerrucomicrobia.Ambient temperature had an indirect effect (P< 0.05) on the phylumFirmicutes, as it affected its proportional balance. The bacterial population diversity in samples appeared to decrease concurrently with the ambient temperature. The phylumFirmicutesexplained the first principal component at 64.83 and 42.58% of the total variance in rumen liquor and fecal samples, respectively. The sample type had a larger effect on bacterial communities than diet and temperature. Certain bacterial populations seemed to be better adapted than others to environmentally adverse conditions, such as less access time to nutrients due to higher motility and rate of passage of digesta caused by extreme temperatures, or antimicrobials such as tannins, possibly due to an influence of their biogeographical location within the gut.

scholarly journals Biogeochemical Regimes in Shallow Aquifers Reflect the Metabolic Coupling of the Elements Nitrogen, Sulfur, and Carbon

2018 ◽  
Vol 85 (5) ◽  
Author(s):  
Carl-Eric Wegner ◽  
Michael Gaspar ◽  
Patricia Geesink ◽  
Martina Herrmann ◽  
Manja Marz ◽  
...  
Keyword(s):  
Land Use ◽  
Organic Matter ◽  
Groundwater Flow ◽  
Inorganic Nitrogen ◽  
Sulfur Metabolism ◽  
Ammonium Oxidation ◽  
Metabolic Potential ◽  
Differentiation Potential ◽  
Near Surface ◽  
Monitoring Wells

ABSTRACTNear-surface groundwaters are prone to receive (in)organic matter input from their recharge areas and are known to harbor autotrophic microbial communities linked to nitrogen and sulfur metabolism. Here, we use multi-omic profiling to gain holistic insights into the turnover of inorganic nitrogen compounds, carbon fixation processes, and organic matter processing in groundwater. We sampled microbial biomass from two superimposed aquifers via monitoring wells that follow groundwater flow from its recharge area through differences in hydrogeochemical settings and land use. Functional profiling revealed that groundwater microbiomes are mainly driven by nitrogen (nitrification, denitrification, and ammonium oxidation [anammox]) and to a lesser extent sulfur cycling (sulfur oxidation and sulfate reduction), depending on local hydrochemical differences. Surprisingly, the differentiation potential of the groundwater microbiome surpasses that of hydrochemistry for individual monitoring wells. Being dominated by a few phyla (Bacteroidetes,Proteobacteria,Planctomycetes, andThaumarchaeota), the taxonomic profiling of groundwater metagenomes and metatranscriptomes revealed pronounced differences between merely present microbiome members and those actively participating in community gene expression and biogeochemical cycling. Unexpectedly, we observed a constitutive expression of carbohydrate-active enzymes encoded by different microbiome members, along with the groundwater flow path. The turnover of organic carbon apparently complements for lithoautotrophic carbon assimilation pathways mainly used by the groundwater microbiome depending on the availability of oxygen and inorganic electron donors, like ammonium.IMPORTANCEGroundwater is a key resource for drinking water production and irrigation. The interplay between geological setting, hydrochemistry, carbon storage, and groundwater microbiome ecosystem functioning is crucial for our understanding of these important ecosystem services. We targeted the encoded and expressed metabolic potential of groundwater microbiomes along an aquifer transect that diversifies in terms of hydrochemistry and land use. Our results showed that the groundwater microbiome has a higher spatial differentiation potential than does hydrochemistry.

scholarly journals Metabolic Diversity within the Globally Abundant Marine Group IIEuryarchaeaOffers Insight into Ecological Patterns

2018 ◽  
Author(s):  
Benjamin J Tully
Keyword(s):  
Organic Matter ◽  
Genomic Analysis ◽  
Comparative Genomic Analysis ◽  
Comparative Genomic ◽  
Metabolic Diversity ◽  
Metabolic Potential ◽  
Surface Ocean ◽  
Ecological Patterns ◽  
Reference Genomes ◽  
Insight Into

AbstractDespite their discovery over 25 years ago, the Marine Group IIEuryarchaea(MGII) have remained a difficult group of organisms to study, lacking cultured isolates and genome references. The MGII have been identified in marine samples from around the world and evidence supports a photoheterotrophic lifestyle combining phototrophy via proteorhodopsins with the remineralization of high molecular weight organic matter. Divided between two clades, the MGII have distinct ecological patterns that are not understood based on the limited number of available genomes. Here, I present the comparative genomic analysis of 250 MGII genomes, providing the most detailed view of these mesophilic archaea to-date. This analysis identified 17 distinct subclades including nine subclades that previously lacked reference genomes. The metabolic potential and distribution of the MGII genera revealed distinct roles in the environment, identifying algal-saccharide-degrading coastal subclades, protein-degrading oligotrophic surface ocean subclades, and mesopelagic subclades lacking proteorhodopsins common in all other subclades. This study redefines the MGII and provides an avenue for understanding the role these organisms play in the cycling of organic matter throughout the water column.

scholarly journals Zonal features of the dynamics of humus content in soils of Chernihiv region

2021 ◽  
pp. 115-125
Author(s):  
O. Grischenko ◽  
S. Romanova ◽  
V. Zapasnyi ◽  
I. Shabanova
Keyword(s):  
Organic Matter ◽  
Green Manure ◽  
Sharp Increase ◽  
Humus Content ◽  
Weighted Average ◽  
Sharp Decrease ◽  
Organic Fertilizers ◽  
Climatic Zones ◽  
Sown Area ◽  
Green Manure Crops

The humus condition of soils of Chernihiv region has been studied. The dynamics of humus content in the soils of the region during six rounds (1986–2015) of agrochemical certification of agricultural lands is generalized and analyzed. In comparison with the 5th round (1986–1990), there was a discrepancy between the processes of stabilization and increase of humus content in most districts and in the region as a whole in the ninth round (2006–2010), and in some districts in the tenth round (2011–2015) against the background of a sharp decrease in the application of organic fertilizers. It was found that the stabilization of humus content in the soils of the region during the V–VIII rounds of agrochemical certification and a sharp increase in its content in the ninth round, against a significant reduction of organic matter, correlates with the withdrawal of eroded, low-yielding lands with low humus content (r=0.76). Analyzing the dynamics of humus content over thirty years of research,it was found that its content has increased in all climatic zones, as well as in nineteen of the twenty-two districts of the region. The increase of the indicator is in the range of 0.01–0.72%, while in all districts there is a significant reduction of the surveyed areas and only in three districts of the region there is a decrease in the humus content. According to the results of the 10th round of agrochemical certification, the soils of Chernihiv region are characterized by an average humus content of 2.41%. The highest humus content is characterized by the soils of Bakhmatsky (3.56%), Talalaivsky (3.33%) and Pryluky (3.32%) districts, and the lowest — NovgorodSiversky (1.57%). Increasing the sown area of green manure crops, plowing straw and the use of other elements of biologization of agriculture are important factors in increasing the weighted average humus content in the soils of Chernihiv region.

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