scholarly journals Genetic diversity in Coffea canephora genotypes for leaf nutrient concentration

2021 ◽  
Vol 53 (1) ◽  
pp. 22-34
Author(s):  
Cleidson Alves da Silva ◽  
Eileen Azevedo Santos ◽  
Alexandre Pio Viana ◽  
Jairo Rafael Machado Dias ◽  
Fábio Luiz Partelli
Keyword(s):  
Genetic Diversity ◽  
Nutrient Concentration ◽  
Grain Filling ◽  
Coffea Canephora ◽  
Nutrient Concentrations ◽  
Group Method ◽  
Coffee Bean ◽  
Genotypic Variability ◽  
Multivariate Statistical ◽  
Leaf Nutrient Concentration

This study analyzed the genetic diversity in Coffea canephora genotypes by univariate and multivariate statistical analysis, based on concentrations of macro- and micronutrients in coffee leaves in the stages of pre-flowering and grain filling. The experiment was arranged in randomized blocks with three replications, in a 42x2 factorial design, in which factor one represented the evaluated genotypes and factor two the periods of leaf sampling, i.e., pre-flowering and grain filling. The data of leaf nutrient concentrations were subjected to analysis of variance by the F test (p <0.01), and genetic parameters were estimated. For the study of genetic diversity, the genotypes were grouped by the hierarchical unweighted pair-group method using arithmetic averages (UPGMA). The relative importance of a trait to predict genetic diversity was also studied. There is genetic divergence for leaf nutrient concentration in C. canephora genotypes. With a maximum limit of 60% of dissimilarity between genotypes, four groups were also formed by UPGMA. For the 42 evaluated genotypes, leaf S concentration was the most important trait for genetic diversity; this genotypic variability should be investigated to enhance the efficiency of nutritional diagnosis. Highlights There is genetic variability for leaf nutrient concentration in Coffea canephora The leaf concentration of nutrients in the phenological stage of pre-anthesis is different from the leaf concentration of nutrients in the coffee bean filling period. Leaf concentration of sulfur was the characteristic that contributed most to the genetic diversity among the 42 genotypes, followed by the concentration of copper, boron and magnesium. Genotypic variability for leaf nutrient concentration should be considered for better nutritional management.

Effects of row spacing and intercrop on maize grain yield and forage production of palisade grass

2012 ◽  
Vol 63 (12) ◽  
pp. 1106 ◽  
Author(s):  
Émerson Borghi ◽  
Carlos Alexandre Costa Crusciol ◽  
Adriano Stephan Nascente ◽  
Gustavo Pavan Mateus ◽  
Priscila Oliveira Martins ◽  
...  
Keyword(s):  
Grain Yield ◽  
Nutrient Concentration ◽  
Block Design ◽  
Crop Management ◽  
Nutrient Concentrations ◽  
Row Spacing ◽  
Maize Grain Yield ◽  
Maize Grain ◽  
Narrow Row ◽  
Leaf Nutrient Concentration

Intercropping of maize (Zea mays L.) with perennial forage, such as palisade grass [Brachiaria brizantha (Hochst. ex A. Rich) Stapf], provides large amounts of biomass that can be used as straw for no-tillage systems or as pasture for animal grazing. In addition, the use of narrow row spacing may increase maize grain yield. However, it is important to evaluate intercrops at different row spacing to avoid reductions in both maize and forage biomass production. The objectives of this field experiment during two growing seasons in Brazil were as follows: (1) to evaluate the influence of intercropping and row spacing on maize yield, leaf nutrient concentration, and plant population and development; and (2) to assess the influence of row spacing on palisade grass herbage mass and leaf nutrient concentration. The experimental design was a randomised complete block design in a 2 × 2 factorial scheme, with eight replications. The treatments comprised two row spacing distances (0.45 and 0.90 m) and two crop management types (maize monoculture and intercropped with palisade grass). The nutrient concentrations in the leaves of the maize plants were in the ideal range for this crop under all conditions studied. Plant height, height of first ear, and number of grains per ear were higher with the narrow row spacing. Maize grain yield was similar in both crop management types (10 301 and 9745 kg ha–1 for monoculture maize and intercropped, respectively). However, maize grain yield at the narrow row spacing was higher than that obtained with the wide row spacing (9948 v. 8905 kg ha–1). In contrast, row spacing did not affect the nutrient level or quality (crude protein concentration) of palisade grass. The amount of dry matter (DM) from palisade grass was lower at maize harvesting (4.7 Mg ha–1) and 90 days after harvesting (6.9 Mg ha–1) under narrow spacing. However, the amount of DM was similar at both row spacings at 120 days after maize harvesting (9.2 Mg ha–1). When there is no problem with water and nutrient availability, the use of maize and palisade grass intercropping under both row spacing conditions (0.45 and 0.90 m) provides an option for the production of forage DM without reducing the maize grain yield.

scholarly journals Seasonal Variation in Leaf Nutrient Concentration of Northern Highbush Blueberry Cultivars Grown in Conventional and Organic Production Systems

HortScience ◽  
2015 ◽  
Vol 50 (10) ◽  
pp. 1453-1466 ◽  
Author(s):  
Bernadine C. Strik ◽  
Amanda J. Vance
Keyword(s):  
Nutrient Concentration ◽  
Vaccinium Corymbosum ◽  
Sampling Time ◽  
Nutrient Concentrations ◽  
Highbush Blueberry ◽  
Organic Mulch ◽  
Leaf Nutrient Concentrations ◽  
Northern Highbush Blueberry ◽  
Leaf Nutrient Concentration ◽  
Leaf N

Northern highbush blueberry (Vaccinium corymbosum L.) cultivars were evaluated for leaf and fruit nutrient concentration at two production sites in 2013–14. The treatments included cultivar (Duke, Bluecrop, Draper, Legacy, Liberty, and Aurora), site [“conventional” (conventionally managed, grower-collaborator site) and “organic” (certified organic research site)], and amendment–mulch [at the organic site only; “organic mulch” (included preplant amendment and a surface mulch of yard debris compost and sawdust); and “weed mat” (no preplant amendments but with a sawdust mulch topped with weed mat)]. Leaf samples were collected every 2 weeks in all treatment plots from late April through early October of each year. Ripe fruit were subsampled from the second harvest for each cultivar. Fruiting season varied from 22 June to 19 Sept. and the highest yielding cultivar, Legacy, had 114% to 330% greater yield than the lowest, Duke, depending on year and site. Cultivar had a significant effect on all fruit nutrients except for phosphorus (P) at the conventional site. Nitrogen (N) and potassium (K) accounted for the largest proportion of nutrient content in the fruit, with 10 to 52 kg·ha–1 and 7 to 34 kg·ha–1 removed in the harvested fruit, respectively, depending on cultivar and site. Fruit carbon concentration ranged from 32% to 44% dry weight with 0.5 to 3.2 t·ha–1 removed in harvested fruit. There were significant year, site, and cultivar effects on leaf nutrient concentrations on many sample dates throughout the season. Despite relatively large differences in management between sites and yield and fruiting season among cultivars, the pattern in leaf nutrient concentration over sampling time was relatively similar between sites and years. Leaf manganese (Mn) and aluminum (Al) concentrations were higher when plants were grown with weed mat as compared with the organic mulch treatment, because soil pH was lower under weed mat than in the organic mulch treatment. ‘Liberty’ had the highest leaf N throughout much of the season at the conventional site. There were relatively large differences among cultivars in leaf magnesium (Mg), calcium (Ca), and K when sampling from mid-July to autumn at both sites. ‘Duke’ and ‘Bluecrop’ tended to have the highest leaf K during this period, whereas ‘Legacy’ and ‘Liberty’ had the lowest. There were greater differences in leaf Ca among cultivars at the conventional site than at the organic site. ‘Draper’ and ‘Legacy’ had higher leaf Ca than ‘Duke’. Leaf nutrient concentrations were within the current published sufficiency levels on many sample dates throughout the season for P, Mg, sulfur (S), Mn, and zinc (Zn), on many dates in midseason for K and Ca, and from mid- to late-season for boron (B) and iron (Fe). However, only when sampled in late July to early August, the current recommended sampling time, was leaf N within sufficiency range. Moreover, there was an effect of cultivar on the concentration of most leaf nutrients at both sites when sampled in late July to early August. The recommended sampling time to determine plant nutrient status in northern highbush blueberry should remain at late July to mid-August, regardless of cultivar, when most nutrients are relatively stable. We recommend lowering the leaf sufficiency range for P and copper (Cu) based on our findings.

Genetic Diversity Among Saudi Peganum harmala and Rhazya stricta Populations Using Chemical and ISSR Markers

2019 ◽  
Vol 20 (13) ◽  
pp. 1134-1146
Author(s):  
Magda E. Abd-Elgawad ◽  
Modhi O. Alotaibi
Keyword(s):  
Genetic Diversity ◽  
Folk Medicine ◽  
Issr Markers ◽  
Wild Plants ◽  
Gas Chromatography Mass Spectrometry ◽  
Group Method ◽  
Peganum Harmala ◽  
Molecular Polymorphism ◽  
Arithmetic Average ◽  
Rhazya Stricta

Background:The vernacular name 'Harmal' is used for two plant species in Saudi Arabia, i.e. Peganum harmala L. and Rhazya stricta Decne. Both are important medicinal plants which offer interesting pharmacological properties.Objective:This study aimed to evaluate the genetic diversity among different populations of harmal based on chemical variations of alkaloids and molecular polymorphism.Methods:Total alkaloids were extracted from plants of three populations of each species and estimated by using spectrophotometer and the chemical compounds were analyzed by Gas chromatography mass spectrometry (GC-MS). Molecular polymorphism was estimated by using the Inter Simple Sequence Repeat (ISSR) fingerprints.Results:The results showed that the alkaloids content of R. stricta was higher than P. harmala populations. The GC-MS analysis revealed the presence of (65-53) compounds in R. stricta and P. harmala, and the percentage of polymorphism was found to be 93.2%. Sixteen ISSR primers produced 170 scorable bands with an average of 9.6 bands per primer and 75%-100% polymorphism. The cluster analysis using the unweighted pair-group method of the arithmetic average (UPGMA) method based on combined data of GC-MS and ISSR markers divided the six harmal genotypes into two major groups.Conclusion:The existence of variations in chemical and genetic markers is useful for the selection of potential genotypes for medicinal use, and for breeding lines for medicinal substances production to spare wild plants from uncontrolled harvesting for folk medicine.

scholarly journals Genetic Diversity Among Some Walnut (Juglans regia L.) Genotypes by SSR Markers

2021 ◽  
Vol 13 (12) ◽  
pp. 6830
Author(s):  
Murat Guney ◽  
Salih Kafkas ◽  
Hakan Keles ◽  
Mozhgan Zarifikhosroshahi ◽  
Muhammet Ali Gundesli ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Plant Genetic Resources ◽  
Juglans Regia ◽  
Genetic Distances ◽  
Mean Value ◽  
Central Anatolia ◽  
Group Method ◽  
Arithmetic Average ◽  
Pair Group ◽  
Principal Coordinates

The food needs for increasing population, climatic changes, urbanization and industrialization, along with the destruction of forests, are the main challenges of modern life. Therefore, it is very important to evaluate plant genetic resources in order to cope with these problems. Therefore, in this study, a set of ninety-one walnut (Juglans regia L.) accessions from Central Anatolia region, composed of seventy-four accessions and eight commercial cultivars from Turkey, and nine international reference cultivars, was analyzed using 45 SSR (Simple Sequence Repeats) markers to reveal the genetic diversity. SSR analysis identified 390 alleles for 91 accessions. The number of alleles per locus ranged from 3 to 19 alleles with a mean value of 9 alleles per locus. Genetic dissimilarity coefficients ranged from 0.03 to 0.68. The highest number of alleles was obtained from CUJRA212 locus (Na = 19). The values of polymorphism information content (PIC) ranged from 0.42 (JRHR222528) to 0.86 (CUJRA212) with a mean PIC value of 0.68. Genetic distances were estimated according to the UPGMA (Unweighted Pair Group Method with Arithmetic Average), Principal Coordinates (PCoA), and the Structure-based clustering. The UPGMA and Structure clustering of the accessions depicted five major clusters supporting the PCoA results. The dendrogram revealed the similarities and dissimilarities among the accessions by identifying five major clusters. Based on this study, SSR analyses indicate that Yozgat province has an important genetic diversity pool and rich genetic variance of walnuts.

scholarly journals Assessment of the Genetic Diversity of Rice Germplasms Characterized by Black-Purple and Red Pericarp Color Using Simple Sequence Repeat Markers

Plants ◽  
2019 ◽  
Vol 8 (11) ◽  
pp. 471
Author(s):  
Jae-Ryoung Park ◽  
Won-Tae Yang ◽  
Yong-Sham Kwon ◽  
Hyeon-Nam Kim ◽  
Kyung-Min Kim ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Ssr Markers ◽  
Simple Sequence Repeat ◽  
Germplasm Collection ◽  
Group Method ◽  
Sequence Repeat ◽  
Rice Varieties ◽  
Red Pericarp ◽  
Simple Sequence ◽  
Colored Rice

The assessment of the genetic diversity within germplasm collections can be accomplished using simple sequence repeat (SSR) markers and association mapping techniques. The present study was conducted to evaluate the genetic diversity of a colored rice germplasm collection containing 376 black-purple rice samples and 172 red pericarp samples, conserved by Dong-A University. There were 600 pairs of SSR primers screened against 11 rice varieties. Sixteen informative primer pairs were selected, having high polymorphism information content (PIC) values, which were then used to assess the genetic diversity within the collection. A total of 409 polymorphic amplified fragments were obtained using the 16 SSR markers. The number of alleles per locus ranged from 11 to 47, with an average of 25.6. The average PIC value was 0.913, ranging from 0.855 to 0.964. Four hundred and nine SSR loci were used to calculate Jaccard’s distance coefficients, using the unweighted pair-group method with arithmetic mean cluster analysis. These accessions were separated into several distinctive groups corresponding to their morphology. The results provided valuable information for the colored rice breeding program and showed the importance of protecting germplasm resources and the molecular markers that can be derived from them.

scholarly journals Genetic diversity in table grapes based on RAPD and microsatellite markers

2011 ◽  
Vol 46 (9) ◽  
pp. 1035-1044 ◽  
Author(s):  
Patrícia Coelho de Souza Leão ◽  
Sérgio Yoshimitsu Motoike
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Genetic Relationships ◽  
Similarity Index ◽  
Genetic Distances ◽  
Table Grape ◽  
Group Method ◽  
Molecular Characteristics ◽  
Table Grapes ◽  
Pair Group

The objective of this work was to analyze the genetic diversity of 47 table grape accessions, from the grapevine germplasm bank of Embrapa Semiárido, using 20 RAPD and seven microsatellite markers. Genetic distances between pairs of accessions were obtained based on Jaccard's similarity index for RAPD data and on the arithmetic complement of the weighted index for microsatellite data. The groups were formed according to the Tocher's cluster analysis and to the unweighted pair‑group method with arithmetic mean (UPGMA). The microsatellite markers were more efficient than the RAPD ones in the identification of genetic relationships. Information on the genetic distance, based on molecular characteristics and coupled with the cultivar agronomic performance, allowed for the recommendation of parents for crossings, in order to obtain superior hybrids in segregating populations for the table grape breeding program of Embrapa Semiárido.

Analisis Skrining Fitokimia dan Aktivitas Antioksidan Ekstrakk Biji Sangrai Kopi Robusta (Coffea canephora) dari Tanaman Hasil Pemupukan Organik dan Anorganik

2021 ◽  
Vol 3 (2) ◽  
Author(s):  
Farah Aida Qotrun Nada ◽  
Tintrim Rahayu ◽  
Ari Hayati
Keyword(s):  
Statistical Tests ◽  
Linear Regression Analysis ◽  
Coffea Canephora ◽  
Coffee Bean ◽  
Phytochemical Screening ◽  
Robusta Coffee ◽  
A Value ◽  
Coffee Beans ◽  
Ic50 Value ◽  
The Difference

Ground coffee is coffee beans that have been roasted, ground or ground so that they have a smooth shape. The purpose of this study was to determine the content of compounds in robusta coffee roasted seed extract (Coffea canephora) from plants produced by organic and inorganic fertilization, and to know the difference in compounds between the results of organic and inorganic fertilization. The characteristics of phytochemical screening were carried out qualitatively on alkaloids, flavonoids, tannins, terpenoids and saponins and the antioxidant activity was carried out by the DPPH (1,1-dipenyl-2-picrihidrazil) method. Phytochemical screening characteristic test results show that robusta coffee bean extract extract from the results of organic and inorganic fertilization both contain flavonoids, alkaloids, tannins, and saponins, while the antioxidant test activity of robusta coffee beans extracts shows differences based on the results of statistical tests of linear regression analysis with the IC50 value the highest antioxidant content was inorganic coffee roasted bean extract only 14.0629 ppm compared to the organic roasted extract with a value of 30.6159 ppmKeywords: Robusta Coffee (Coffea canophora), Phytochemical Screening, DPPH MethodABSTRAKKopi bubuk adalah biji kopi yang telah disangrai digiling atau ditumbuk sehingga mempunyai bentuk halus. Tujuan dari penelitian ini adalah untuk mengetahui kandungan senyawa dalam ekstrak biji sangrai kopi robusta (Coffe canephora) dari tanaman hasil pemupukan organik dan anorganik, dan mengetahui perbedaan senyawa antara hasil pemupukan organik dan anorganik. Karakteristik skrining fitokimia dilakukan secara kualitatif yang dilakukan terhadap alkaloid, flavonoid, tanin, terpenoid dan saponin dan aktivitas antioksidan dilakukan dengan metode DPPH (1,1-difenil-2-pikrihidrazil). Hasil uji karakteristik skrining fitokimia menunjukkan bahwa ekstrak biji sangrai kopi robusta dari hasil pemupukan oganik dan anorganik keduanya sama mengandung senyawa flavonoid, alkaloid, tanin, dan saponin,  sedangkan pada aktifitas uji antioksidan ekstrak biji sangrai kopi robusta menunjukan perbedaan berdasarkan hasil uji statistik analisis regresi linear dengan nilai IC50 kadar antioksidan paling tinggi adalah ekstrak biji sangrai kopi anorganik hanya 14,0629 ppm dibandingkan dengan ekstrak sangrai dari organik dengan nilai 30,6159 ppm.Kata kunci : Kopi Robusta (Coffea canophera), Skrining Fitokimia, Metode DPPH

Genetic Structure and Diversity among Species of Salacia: An Endangered Medicinal Herb of Western Ghats, India

2019 ◽  
Vol 9 (1) ◽  
pp. 23-33
Author(s):  
Chandrashekhar G Patil ◽  
Sheetal Ganapati Kamat ◽  
R Vasudeva
Keyword(s):  
Genetic Diversity ◽  
Southern China ◽  
Issr Marker ◽  
Group Method ◽  
Population Genetic Differentiation ◽  
Expected Heterozygosity ◽  
Marker Analysis ◽  
Endangered Medicinal Herb ◽  
High Level ◽  
Genetic Structure And Diversity

Salacia is one of the medicinally valuable genus, distributed throughout tropical areas which include India, Sri Lanka, Southern China and other Southern Asian Countries. The genus Salacia is represented by 21 species in India, among them eight species are recorded from the state of Karnataka in the Southern part of India. Despite its pharmaceutical importance, very little information exists about the genetic diversity of Salacia at molecular level. Hence the present study was carried out to evaluate the genetic among six species of Salacia namely S. chinensis, S. malabarica, S. oblonga, S. macrosperma, S. reticulata and S. gambleana with the help of ISSR marker analysis. Dendrogram and genetic distance were generated adopting Unweighted Paired Group Method with Arithmetic mean (UPGMA) in the NTSYS-pc software. Basic genetic parameters were calculated by analysing the genetic data with Pop gene 1.32 and GenAlEx 6.2 software. The overall polymorphism across the ten primers screened revealed 26 % polymorphism. A 60% polymorphism was scored for the primer UBC 841, whereas, no polymorphism was observed for primer UBC 840 and ISSR 6. The average observed heterozygosity was more than expected heterozygosity. Observed heterozygosity (Ho) ranged from 0.15 (UBC 841) to 0.38 (ISSR 6) with an average of 0.25, whereas expected heterozygosity (He) ranged from 0.10 (UBC 843) to 0.35 (ISSR 6) with an average of 0.23 for Salacia species. The higher heterozygosity pointed towards increased genetic diversity amongst the species. ISSR marker analysis showed high level of inter and intra population genetic differentiation.

Genetic Diversity Analysis of Salvadora Oleoides Decne: An Evergreen Dry Land Fruit Tree of Rajasthan, India

2021 ◽  
Author(s):  
Juleri M Upendra ◽  
Shari Nair ◽  
Satyawada R Rao ◽  
Harchand R Dagla
Keyword(s):  
Genetic Diversity ◽  
Random Amplified Polymorphic Dna ◽  
Splice Junction ◽  
Genetic Distances ◽  
Climatic Conditions ◽  
Fruit Tree ◽  
Group Method ◽  
Dry Land ◽  
Intron Splice ◽  
Semi Arid

Abstract Genetic diversity of Salvadora oleoides Decne is analyzed by cumulative data of 10 Random Amplified Polymorphic DNA (RAPD), 10 Inter Simple Sequence Repeats (ISSR) and 7 Intron Splice Junction (ISJ) markers. The plant is an evergreen fruit tree and well distributed in semi-arid and sub-humid climatic conditions of Rajasthan, India. RAPD, ISSR and ISJ primers accounted for 84.4%, 85.3%, 85.9% polymorphism. Average 0.23 PIC is accounted for RAPD, ISSR and ISJ primers. The genetic similarity ranged between 0.42-0.89. Analysis of molecular variance (AMOVA) revealed higher variation (73%) at intra-population than inter-population (27%) level. Genetic distances based on Un-weighted Pair Group Method with Arithmetic mean (UPGMA) dendrogram and Principal Coordinate Analysis (PCoA) is correlated with physical distances or climatic conditions of Salvadora oleoides Decne in a semi-arid and sub-humid environment of Rajasthan. The present investigation may help in the understanding of gene flow systems between physical distances and environmental heterogeneity of the populations for better management of Salvadora oleoides Decne in the region.

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