scholarly journals Changes in nucleic acid and protein levels during in vitro germ¬nation and elongation of Lilium longifforum cv. "Ace" polleni

2014 ◽  
Vol 50 (1-2) ◽  
pp. 39-50
Author(s):  
William V. Dashek
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Total Protein ◽  
Time Course ◽  
Lilium Longiflorum ◽  
Protein Levels ◽  
Dna And Rna ◽  
Rna And Dna ◽  
Rna Levels

While changes in nucleic acid and protein levels during germination and subsequent tube elongation have been determined for a number of pollens, they have not been extensively examined for <em>in vitro</em> grown <em>Lilium longiflorum</em>, cv. `Ace' pollen. Nucleic acids and proteins were extracted with cold trichloroacetic acrid (TCA), cold-hot TCA or cold TCA and potassium hydroxide-perchloric acid (KOH-HClO<sub>4</sub>). Following extraction, RNA, DNA and total protein were assayed colorimetrically with orcinol, diphenylamine and Folin-Phenol reagents, respectively. Extraction of 500 x g supernatants with KOH-HClO<sub>4</sub>, yielded less RNA than either of the TCA-extraction procedures which gave similar nucleic acids and protein recoveries. Whereas total protein levels decreased initially and then increased during 36 h, RNA and DNA levels rose throughout the time-course. Precipitation and quaritiation of nucleic acids and protein from homogenized and soaicated 500 x g pellets resulted in time-dependent alterations in levels of macromolecules which differed from those for 500 x g supernatants. Whereas DNA and RNA levels increased and then decreased over 36 h, total protein levels remained constant for 12 h and then declined during the : next 24 h. Addition of the data obtained for 500 x g supernatants to those for 500 x g pellets revealed that total protein levels increased 2.4 times for the first 12 h and thereafter remained constant, that RNA levels increased 9.8 times for the first 12 h and then levelled off and that the DNA content rose more than 5 times over 36 h.

A Critical Assessment of RNA-Mediated Materials Synthesis

2010 ◽  
Vol 1272 ◽  
Author(s):  
Stefan Franzen ◽  
Donovan Leonard
Keyword(s):  
Electron Microscopy ◽  
Catalytic Activity ◽  
Nucleic Acid ◽  
Nucleic Acids ◽  
In Vitro Selection ◽  
Water Soluble ◽  
Cds Nanoparticles ◽  
Materials Synthesis ◽  
Rna And Dna

AbstractRNA- and DNA-mediation or templating of materials has been used to synthesize nanometer scale wires, and CdS nanoparticles. However, RNA and DNA have the potential to act as catalysts, which could be valuable tools in the search for new routes to materials synthesis. RNA has the ability to catalyze splicing and cutting of other RNA molecules. Catalytic activity has been extended to more general classes of reactions for both RNA and DNA using in vitro selection methods. However, catalytic activity in materials synthesis is a more recent idea that has not yet found great application. The first example of RNA-mediated evolutionary materials synthesis is discussed with specific data examples that show incompatibility of reagents in the solvent system utilized. The hydrophobic reagent Pd2(DBA)3, used as a metal precursor, was observed to spontaneously form nanostructures composed of Pd2(DBA)3 or Pd(DBA)3 rather than palladium nanoparticles, as originally reported 1. A case study of this materials synthesis example is described including the complimentary use of multi-length scale techniques including transmission electron microscopy (TEM), selected area electron diffraction (SAED), scanning TEM (STEM), electron energy loss spectroscopy (EELS), scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (EDS) and optical microscopy (OM). This example raises important questions regarding the extent to which non-aqueous solvents should be used in nucleic acid-mediated processes, the nature of selections in enzyme and materials development, and the requirement for chemical compatibility of the precursor molecules. The importance of good characterization tools at every stage of an in vitro selection is illustrated with concrete examples given. In order to look at the way forward for nucleic acid-mediated materials synthesis, an examination of the chemical interaction of nucleic acids with various precursors is considered. Application of density functional theory calculations provides one means to predict reactivity and compatibility. The repertoire of chemical interactions in the nucleic acids is considered vis-à-vis common metals and metal chalcogenides. The case is made for the need for water-soluble syntheses and well-controlled kinetics in order to achieve the control that is theoretically possible using nucleic-acids as a synthetic tool.

scholarly journals An Improved 4’-Aminomethyltroxsalen-Based DNA Crosslinker for Biotinylation of DNA

2020 ◽  
Author(s):  
Kevin Wielenberg ◽  
Miao Wang ◽  
Min Yang ◽  
Abdullah Ozer ◽  
John T. Lis ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Uv Light ◽  
Dna And Rna ◽  
Double Stranded Dna ◽  
Long Wave ◽  
Genome Wide ◽  
In Cells

AbstractNucleic acid crosslinkers that covalently join commentary strands have applications as both pharmaceuticals and biochemical probes. Psoralen is a popular crosslinker moiety that reacts with double stranded DNA and RNA upon irradiation with long wave UV light. A commercially available compound EZ-Link Psoralen-PEG3-Biotin has been used in many studies to crosslink DNA and double strand RNA for genome-wide investigations. Here we present a novel probe, AP3B, which uses a psoralen derivative, 4’-aminomethyltrioxsalen, to biotinylate nucleic acids. We show that this compound is 8-fold more effective at labeling DNA in cells and several hundred-fold more effective at crosslinking two strands of DNA in vitro than the commercially available compound EZ-Link Psoralen-PEG3-Biotin.

Tumor cell metabolism in vitro: a study of incubation media

1970 ◽  
Vol 48 (4) ◽  
pp. 517-519 ◽  
Author(s):  
I. C. Caldwell ◽  
Marianne F. Chan
Keyword(s):  
Nucleic Acid ◽  
Structural Integrity ◽  
Cell Metabolism ◽  
Ehrlich Ascites Carcinoma ◽  
Leukemic Cells ◽  
Prolonged Incubation ◽  
Ehrlich Ascites ◽  
Eac Cells ◽  
Rna And Dna

A number of incubation media which have been used in studies of the metabolism of Ehrlich ascites carcinoma (EAC) cells in vitro have been examined with respect to their abilities to support the incorporation of radioactive precursors into nucleotides and nucleic acids, and to maintain the structural integrity and tumor-inducing abilities of EAC cells. Cells incubated in the chemically-defined "Fischer's medium for leukemic cells of mice" were able to produce lethal tumors in mice after more than 16 h of incubation, maintained their structural integrity on prolonged incubation, and catalyzed high rates of incorporation of exogenously added substrates into nucleotides, RNA, and DNA. However, cells incubated in balanced salts solutions supplemented with glucose had these characteristics: (a) were unable to produce lethal tumors after 4 h of incubation, (b) released large amounts of nucleotide, nucleic acid, and protein material into the medium after less than 2 h of incubation, and (c) catalyzed the incorporation of radioactive precursors into nucleotides and RNA at much lower rates than did cells incubated in Fischer's medium, and were virtually unable to catalyze the incorporation of adenine-14C into DNA.

scholarly journals Bat Red Blood Cells express Nucleic Acid Sensing Receptors and bind RNA and DNA

2022 ◽  
Author(s):  
LK Metthew Lam ◽  
Jane Dobkin ◽  
Kaitlyn A. Eckart ◽  
Ian Gereg ◽  
Andrew DiSalvo ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Red Blood Cells ◽  
Immune Function ◽  
Blood Cells ◽  
Toll Like Receptors ◽  
Cpg Dna ◽  
Human Rbcs ◽  
Insight Into ◽  
Rna And Dna

Red blood cells (RBCs) demonstrate immunomodulatory capabilities through the expression of nucleic acid sensors. Little is known about bat RBCs, and no studies have examined the immune function of bat erythrocytes. Here we show that bat RBCs express the nucleic acid-sensing Toll-like receptors TLR7 and TLR9 and bind the nucleic acid ligands, single-stranded RNA, and CpG DNA. Collectively, these data suggest that, like human RBCs, bat erythrocytes possess immune function and may be reservoirs for nucleic acids. These findings provide unique insight into bat immunity and may uncover potential mechanisms by which virulent pathogens in humans are concealed in bats.

scholarly journals Quantitative Evaluation of Nucleic Acid Degradability of Copper Alloy Surfaces and Its Correlation to Antibacterial Activity

Antibiotics ◽  
2021 ◽  
Vol 10 (12) ◽  
pp. 1439
Author(s):  
Akiko Yamamoto ◽  
Shinji Tanaka ◽  
Keiichiro Ohishi
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Copper Ion ◽  
Antibacterial Activities ◽  
Ion Release ◽  
Antibacterial Materials ◽  
Cu Content ◽  
Cu Alloys ◽  
Film Method

Copper (Cu) and its alloys have bactericidal activity known as “contact killing” with degradation of nucleic acids inside the bacteria, which is beneficial to inhibit horizontal gene transfer (HGF). In order to understand the nucleic acid degradability of Cu and its alloy surfaces, we developed a new in vitro method to quantitatively evaluate it by a swab method under a “dry” condition and compared it with that of commercially available antibacterial materials such as antibacterial stainless steel, pure silver, and antibacterial resins. As a result, only Cu and its alloys showed continuous degradation of nucleic acids for up to 6 h of contact time. The nucleic acid degradability levels of the Cu alloys and other antibacterial materials correlate to their antibacterial activities evaluated by a film method referring to JIS Z 2801:2012 for Gram-negative (Escherichia coli) and Gram-positive (Staphylococcus aureus) bacteria. Nucleic acid degradation by copper (I) and (II) chlorides was confirmed at the ranges over 10 mM and 1–20 mM, respectively, suggesting that the copper ion release may be responsible for the degradation of the nucleic acids on Cu and its alloy surfaces. In conclusion, the higher Cu content in the alloys gave higher nucleic acid degradability and higher antibacterial activities.

scholarly journals Cleavage of DNA and RNA by PLD3 and PLD4 limits autoinflammatory triggering by multiple sensors

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Amanda L. Gavin ◽  
Deli Huang ◽  
Tanya R. Blane ◽  
Therese C. Thinnes ◽  
Yusuke Murakami ◽  
...  
Keyword(s):  
Nucleic Acid ◽  
Inflammatory Diseases ◽  
Type I ◽  
Multiple Sensors ◽  
Dna And Rna ◽  
Elevated Type ◽  
Minor Contribution ◽  
Ifn Γ ◽  
A Minor ◽  
Rna And Dna

AbstractPhospholipase D3 (PLD3) and PLD4 polymorphisms have been associated with several important inflammatory diseases. Here, we show that PLD3 and PLD4 digest ssRNA in addition to ssDNA as reported previously. Moreover, Pld3−/−Pld4−/− mice accumulate small ssRNAs and develop spontaneous fatal hemophagocytic lymphohistiocytosis (HLH) characterized by inflammatory liver damage and overproduction of Interferon (IFN)-γ. Pathology is rescued in Unc93b13d/3dPld3−/−Pld4−/− mice, which lack all endosomal TLR signaling; genetic codeficiency or antibody blockade of TLR9 or TLR7 ameliorates disease less effectively, suggesting that both RNA and DNA sensing by TLRs contributes to inflammation. IFN-γ made a minor contribution to pathology. Elevated type I IFN and some other remaining perturbations in Unc93b13d/3dPld3−/−Pld4−/− mice requires STING (Tmem173). Our results show that PLD3 and PLD4 regulate both endosomal TLR and cytoplasmic/STING nucleic acid sensing pathways and have implications for the treatment of nucleic acid-driven inflammatory disease.

An Investigation of the Anomalous Staining of Chromatin by the Acid Dyes, Methyl Blue and Aniline Blue

1962 ◽  
Vol s3-103 (64) ◽  
pp. 519-530
Author(s):  
R. B. McKAY
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Methyl Blue ◽  
Aniline Blue ◽  
Acid Dyes ◽  
Dna And Rna ◽  
Basic Dyes ◽  
Blue Stain ◽  
High Degree ◽  
Mechanism Of The Reaction

Methyl blue and aniline blue, though acid dyes, stain the chromatin of the spermatogenetic cells of the mouse (especially of the primary spermatocytes) strongly. Extraction of the basiphil nucleic acid constituents from the chromatin causes loss of this property, while destruction of acidophilia in the protein constituents does not. It has been concluded that the dyes interact with the nucleic acids. Further, they appear to react with both DNA and RNA in the chromatin, although they show no affinity for the cytoplasm of the exocrine cells in sections of pancreas, which is rich in RNA. The mechanism of the reaction has not been fully elucidated, although apparently the dyes do not behave as basic dyes towards the nucleic acids, and the interaction is non-ionic. Methyl blue and aniline blue stain strongly other ‘acidic’ substrates, such as cellulose and nitrocellulose, and attempts have been made to relate the staining of nucleic acids to the staining of these substrates, particularly cellulose; for the staining properties of this substrate have been intensively investigated elsewhere. No satisfactory correlation, however, has been obtained, for nitrocellulose has been found to be less strongly stained at pH 3.0 than at pH 7.1, while the reverse is true for cellulose. Further, only one of 3 direct cotton dyes used appears to have any affinity for the chromatin of the spermatogenetic cells. Direct cotton dyes have large flat molecules with a high degree of conjugation. It is suggested that these characteristics are essential for interaction with nucleic acids, and also that the molecule must be reasonably compact. Finally, it has been shown that methyl blue, aniline blue, and 3 direct cotton dyes of the azo type have no ability to stain the glycogen in liver cells, yet glycogen is very closely related to cellulose.

Insulin and incorporation of radioactivity into nucleic acid fraction of isolated diaphragm

1960 ◽  
Vol 199 (4) ◽  
pp. 719-721 ◽  
Author(s):  
Ira G. Wool
Keyword(s):  
Nucleic Acid ◽  
Nucleic Acids ◽  
Glucose Concentration ◽  
Orotic Acid ◽  
Acid Fraction ◽  
Rat Diaphragm ◽  
Isolated Rat

Insulin in vitro stimulated the incorporation into the nucleic acid fraction of isolated rat diaphragm of radioactivity from d-glucose-U-C14, adenine-8-C14 and orotic acid-6-C14; insulin had no effect on the incorporation of thymine-2-C14 into muscle nucleic acids. Insulin enhanced the incorporation into nucleic acids of C14 from adenine and orotic acid in the absence of added glucose, and incorporation of adenine-8-C14 was not influenced by glucose concentration over the range 0–600 mg %.

THE SYNTHESIS OF DNA AND RNA IN HUMAN CARCINOMATOUS ENDOMETRIUM IN SHORT-TERM INCUBATION IN VITRO AND ITS RESPONSE TO OESTRADIOL AND PROGESTERONE

1970 ◽  
Vol 48 (1) ◽  
pp. 29-38 ◽  
Author(s):  
S. NORDQVIST
Keyword(s):  
Nucleic Acids ◽  
Dna Synthesis ◽  
High Concentration ◽  
Short Term ◽  
Younger Women ◽  
Dna And Rna ◽  
Poorly Differentiated ◽  
Endometrial Carcinomas ◽  
Dose Dependent

SUMMARY Twenty-five endometrial carcinomas and three non-endometrial carcinomas were studied for the influence of various steroid hormones on the synthesis of DNA and RNA in short-term incubations in vitro. Endometrial carcinomas showed a dose-dependent sensitivity to progesterone in vitro, the response in both nucleic acids sometimes exceeding that of normal endometria. The mean reduction in DNA synthesis was to 46% and in RNA synthesis to 39% of the control values. Poorly differentiated carcinomas showed higher values of DNA synthesis than highly differentiated ones, as did carcinomas from younger women compared with those from older women. The response in vitro to progesterone was not correlated with these factors. Pregnenolone and a synthetic progestogen were less effective in vitro than progesterone. Oestradiol at a high concentration (20 μg/ml) in some cases significantly reduced the synthesis of both nucleic acids, possibly because of a specific 'toxic' action on the cells. No hormonal effects were observed in non-endometrial carcinomas.

Regulators of Cell Division in Plant Tissues. XXII* Physiological Aspects of Cytokinin-induced Radish Cotyledon Growth

1975 ◽  
Vol 2 (2) ◽  
pp. 129
Author(s):  
M.E Gordon ◽  
D.S Letham
Keyword(s):  
Translational Control ◽  
Total Protein ◽  
Specific Activity ◽  
Red Light ◽  
Growth Control ◽  
Growth Stimulation ◽  
Protein Levels ◽  
Dna And Rna ◽  
Dna And Rna Synthesis ◽  
Lag Period

The cytokinin 6-benzylaminopurine (BAP) markedly stimulated the lateral expansion of excised immature radish cotyledons after a lag period of about 10 h. This growth occurred principally by cell enlargement, especially in the light which enhanced the response. However, a marked response 'to cytokinin occurred in the complete absence of red light during germination, cotyledon excision and incubation. Contact with BAP for 5 h significantly stimulated growth, but a maximum response required more than 24 h of contact; potassium chloride also promoted cotyledon expansion and acted synergistically with cytokinin. The response to cytokinin did not appear to be mediated by ethylene, gibberellins, polyamines or cyclic nucleotides. Growth induction did not alter the respiration rate and appeared to be inde- pendent of chloroplast function. Inhibitors of DNA and RNA synthesis and of protein synthesis on cytoplasmic ribosomes almost completely abolished BAP-induced growth, control growth being less markedly affected. There were, however, no significant BAP-induced increases in total DNA or RNA levels or specific activity before the initiation of growth stimulation. Similarly, BAP had no effect on any individual RNA species until after the lag period, when there was a small enhancement of uridine incorporation into RNA species with similar electrophoretic mobility to rRNA. Although total protein levels were not affected by BAP, the cytokinin enhanced amino acid incorporation into protein within the lag period, an effect which persisted when transcription was strongly inhibited by actinomycin D. Phosphorylation of total protein was stimulated by BAP only well after the onset of cytokinin-induced growth. Protein methylation, however, was stimulated by BAP during the lag period, and the effect was at least as early as the BAP-enhanced incorporation of methionine into protein. The possible role of translational control in the mechanism of cytokinin action is discussed.

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