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Molecules ◽  
2022 ◽  
Vol 27 (2) ◽  
pp. 495
Author(s):  
Justyna Krupa ◽  
Maria Wierzejewska ◽  
Jan Lundell

Weak complexes of isocyanic acid (HNCO) with nitrogen were studied computationally employing MP2, B2PLYPD3 and B3LYPD3 methods and experimentally by FTIR matrix isolation technique. The results show that HNCO interacts specifically with N2. For the 1:1 stoichiometry, three stable minima were located on the potential energy surface. The most stable of them involves a weak, almost linear hydrogen bond from the NH group of the acid molecule to nitrogen molecule lone pair. Two other structures are bound by van der Waals interactions of N⋯N and C⋯N types. The 1:2 and 2:1 HNCO complexes with nitrogen were computationally tracked as well. Similar types of interactions as in the 1:1 complexes were found in the case of the higher stoichiometry complexes. Analysis of the HNCO/N2/Ar spectra after deposition indicates that the 1:1 hydrogen-bonded complex is prevalent in argon matrices with a small amount of the van der Waals structures also present. Upon annealing, complexes of the 1:2 and 2:1 stoichiometry were detected as well.


2022 ◽  
Vol 5 (1) ◽  
Author(s):  
Ryo Negishi ◽  
Hitomi Yamakawa ◽  
Takeru Kobayashi ◽  
Mayuko Horikawa ◽  
Tatsu Shimoyama ◽  
...  

AbstractTranscriptome analysis of circulating tumor cells (CTCs), which migrate into blood vessels from primary tumor tissues, at the single-cell level offers critical insights into the biology of metastasis and contributes to drug discovery. However, transcriptome analysis of single CTCs has only been reported for a limited number of cancer types, such as multiple myeloma, breast, hepatocellular, and prostate cancer. Herein, we report the transcriptome analysis of gastric cancer single-CTCs. We utilized an antigen-independent strategy for CTC isolation from metastatic gastric cancer patients involving a size-dependent recovery of CTCs and a single cell isolation technique. The transcriptomic profile of single-CTCs revealed that a majority of gastric CTCs had undergone epithelial-mesenchymal transition (EMT), and indicated the contribution of platelet adhesion toward EMT progression and acquisition of chemoresistance. Taken together, this study serves to employ CTC characterization to elucidate the mechanisms of chemoresistance and metastasis in gastric cancer.


2022 ◽  
Author(s):  
Sangwook Bae ◽  
Yushin Jung ◽  
Sungsik Kim ◽  
Jinhyun Kim ◽  
Amos Chungwon Lee ◽  
...  

Analyzing archived peripheral blood smears is a potential route towards gaining cell morphology and genome information of blood cell types from various diseases. Yet, acquiring whole genome information from morphologically targeted cells was difficult, especially for rare cell types. The main causes for such difficulty were the inevitable usage of cell stains leading to whole genome amplification inhibition, and insufficient cell isolation performance of previously introduced laser microdissection (LMD) techniques. Here, we introduce a new laser-based cell isolation technique and a whole genome amplification (WGA) protocol optimized for whole genome analysis from minute input of hematologically stained cells. We were able to perform whole genome copy number profiling and SNP analysis from as little as 5 cells.


Author(s):  
Meiyan Luo ◽  
Leilei Chen ◽  
Huanming Liu ◽  
Jiahui Jiang ◽  
Chongxi Lai ◽  
...  

Abstract The structure of the microbial community during sand crab juice fermentation was analyzed using culture-based methods and high-throughput 16S rRNA gene sequencing. Additionally, the changes in amino acid nitrogen (AAN) and total volatile basic nitrogen (TVB-N) were evaluated. Staphylococcus equorum, Staphylococcus arlettae, Staphylococcus saprophyticus, Salinicoccus amylolyticus, and Bacillus cereus were isolated by traditional culture isolation technique. The Good's coverage obtained by high-throughput sequencing was over 99.5%, and the Chao1 and Simpson indices showed small fluctuations, indicating that the species abundance and diversity did not change significantly during the fermentation process, although the abundance decreased. Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria were the dominant bacterial phyla observed during fermentation, whereas Aquabacterium, Roseovarius, Muribaculaceae, and Silicimonas were the dominant bacterial genera. The AAN content increased from 0.15 to 0.43 g/100 mL during the 15-day fermentation, indicating the production of small peptides and amino acids during fermentation. The TVB-N content (25.2 mg/100 mL) on day 15 indicated slight spoilage of sand crab juice, although the freshness conformed to the production standard. These results provide a theoretical basis for improving the quality and optimizing the production process of sand crab juice.


Plant Disease ◽  
2021 ◽  
Author(s):  
Jian Zou ◽  
Tingfu Zhang ◽  
Guoqin Wen ◽  
Bo Song ◽  
Shijiao Jiang

Grapes (Vitis vinifera L.) are very popular in China as fresh fruit. Due to its storability, some grape varieties can be kept fresh until winter, increasing the popularity of fruit grapes. However, in 2019, rot symptoms were observed on cv. Crimson in Wuhan, Hubei (30°52′N, 114°31′E), and Chengdu, Sichuan (30°67′N, 104°06′E). Subsequently, from 2019 to 2021, Liangshan (28°33′N, 102°42′E, cv.Crimson), Ya’an (29°40′N, 102°66′E, cv. Red globe), and Nanchong (30°80′N, 106°06′E, cv. Victoria), Sichuan also experienced the same decay symptoms. Initial symptoms of this disease were slightly sunken lesions on the berries 5 to 7 days in storage at 28℃, and then white mycelial growth on the surface of lesions. The growth became bluish-green following the occurrence of abundant sporulation, along with softening and collapsing the whole berry (Fig. 1a). Twenty symptomatic berries from each city were collected (100 samples in total) and twenty isolates were obtained using the single spore isolation technique developed by Chomnunti et al. (2014). The colony on PDA media initially appeared as white mycelium, and later developed into greenish-gray to grayish-green sporulation with white margins, the colony diameter reached 32.5 to 34.5 mm after ten days of incubation at 28±1℃. The reverse side of the colony was oblive-brown or grayish-yellow. Morphological characteristics of the twenty isolates showed that the conidiophores were broom-shaped and verticillate, the stipes smooth-walled and measured 120 to 300 × 2.5 to 4.0 μm; the ramus (n = 2 to 3) measured 6.0 to 15 × 2.5 to 3.6 μm; the metulas (n = 2 to 4) were verticillate, with sizes ranging from 8.7 to 9.8 × 2.0 to 3.2 μm; the phialides (n = 3 to 7) were elongate and ampulliform, with sizes ranging from 2.0 to 3.5 × 2.0 to 2.4 μm; the conidia (2.0 to 3.5 × 2.0 to 2.4 μm) were sub-globose to ellipsoidal in shape, with thick and finely roughened walls. Based on these cultural and morphological characteristics, the isolates were identified as Penicillium olsonii Bainier & Sartory (Frisvad et al., 1990). A multi-locus approach was performed to accurately identify a representative WHG5 isolate. The internal transcribed spacer regions (ITS), calmodulin (CaM,), beta tubulin (BenA), and 18S ribosomal RNA (18S) of isolate WHG5 were amplified and sequenced as described by Walker et al. (2012). The pairwise alignments of ITS, CaM, BenA, and 18S sequences was nearly 100% identical to Penicillium olsonii with GenBank accession numbers KX056230.1 (524/524 bp, 100%), DQ645807.1 (570/572 bp, 99%), AY674444.1 (472/472 bp, 99%), and FJ717701.1 (1299/1301 bp, 99%), respectively. The resulting sequences were deposited in GenBank (Accession no. ITS: MW192867; CaM: MZ936474; BenA: MZ936475; and 18S: MZ936476). The phylogenetic analysis performed with the Neighbor-Joining method classified WGH5 into the P. olsonii clade with a posterior probability of 100% based on the concatenated sequences of the ITS CaM, BenA, and 18S (Fig. 2). Combined with the above morphological characteristics, we finally confirmed the identity of isolate WGH5 as P. olsonii. To fulfill Koch’s postulates and confirm the pathogenicity of WGH5, a 10 μL conidial suspension (1 × 106 spores/mL) aliquot was inoculated into the healthy grape berry (cv. Crimson) while using sterile distilled water as a control. Thirty berries were surface disinfected with 2% sodium hypochlorite then artificially wounded prior to inoculation with the conidial suspension. The artificial wound was made using a sterilized steel needle with a diameter of 0.5 mm and a depth of 0.3 cm. All the inoculated fruits were placed in sealed and sterilized Petri dishes and incubated at 28±1℃. The experiments were done in triplicate. After five days, the inoculated grape berries showed typical symptoms (Fig. 1b) while the control remained asymptomatic. Using the same protocol as above, the fungus P. olsonii was re-isolated from the symptomatic inoculated berries but not successfully from mock-inoculated berries. Previously, P. olsonii has been reported from Portuguese wine grapes (Serra et al., 2007). This study is the first time that P. olsonii was reported as a plant pathogen in China. Since the grapes were collected from grocery stores, details of post-harvest management that could have affected disease presence and progression of rotting were not available.


2021 ◽  
Vol 23 (Supplement_G) ◽  
Author(s):  
Rosalinda Madonna ◽  
Simone Guarnieri ◽  
Csenger Kovacshazi ◽  
Aniko Gorbe ◽  
Zoltan Giricz ◽  
...  

Abstract Aims Cardiac stromal cells (CSCs) contain a pool of cells with supportive and paracrine functions. Various types of mesenchymal stromal cells (MSCs) can influence CSCs in the cardiac niche through their paracrine activity. Ischemia/reperfusion (I/R) leads to cell death and reduction of the paracrine activity of CSCs. The forced coexpression of telomerase reverse transcriptase (TERT) and myocardin (MYOCD), known to potentiate anti-apoptotic, pro-survival and pro-angiogenic activities of MSCs isolated from the adipose tissue (AT-MSCs), may increase CSC survival, favouring their paracrine activities. To investigate the hypothesis that CSCs feature improved resistance to simulated I/R (SI/R) and increased commitment toward the cardiovascular lineage when preconditioned with conditioned media (CM) or extracellular vesicles (EV) released from AT-MSCs overexpressing TERT and MYOCD (T/M AT-MSCs). Methods Murine CSCs were isolated with the cardiosphere (CSps) isolation technique. Results T/M AT-MSCs and their secretome improved spontaneous intracellular calcium changes and ryanodine receptor expression in aged CSps. The cytoprotective effect of AT-MSCs was tested in CSCs subjected to SI/R. SI/R induced cell death as compared to normoxia (28 ± 4 vs. 10 ± 3%, P = 0.02). Pre-treatment with CM (15 ± 2, P = 0.02) or with the EV-enriched fraction (10 ± 1%, P = 0.02) obtained from mock-transduced AT-MSCs in normoxia reduced cell death after SI/R. The effect was more pronounced with CM (7 ± 1%, P = 0.01) or the EV-enriched fraction (2 ± 1%, P = 0.01) obtained from T/M AT-MSCs subjected to SI/R. In parallel, we observed lower expression of the apoptosis marker cleaved caspase-3 and higher expression of cardiac and vascular markers eNOS, sarcomeric α-actinin and cardiac actin. Conclusions The T/M AT-MSCs secretome exerts a cytoprotective effect and promotes development of CSCs undergoing SI/R towards a cardiovascular phenotype.


2021 ◽  
Vol 9 (11) ◽  
pp. 111-115
Author(s):  
Shradha Suman ◽  
◽  
Prakash Lokhande ◽  
Dhanyakumar N.M ◽  
Siddheswaran V. ◽  
...  

Context: A proper isolation technique plays a key role in the success of restoration of carious tooth. Aim Of The Study: The aim of this in-vivo study was to evaluate efficacy of addition silicone dam coverage technique with conventional isolation methods in restorative procedures and endodontic treatment. Settings And Design: Forty-Five patients who fulfill the inclusion criteria were selected for the study. Materials And Methods: All the participants underwent clinical procedures using 3 different isolation techniques. Group-1: Clinical procedures were carried out using traditional cotton roll isolation. Group-2: Clinical procedures were carried out using conventional rubber dam isolation procedure. Group-3: Clinical procedures were carried out using addition silicone dam coverage technique. The efficacy of isolation in terms of clinician usage and patient comfort is evaluated by a single evaluator. The results were tabulated and statistically analyzed. Statistical Analysis: IBM SPSS (version 21.0) software was used. Chi-square test was performed, considering P < 0.05 for statistical significance. Results: All the groups demonstrated satisfactory clinical performance. Upon inter and intra-group comparison of the isolation methods, there was statistically significant difference (P > 0.05). Conclusion: It is important to achieve an aseptic environment in clinical restorative and endodontic procedures. Addition silicone dam coverage technique is a chair side modified design which is user friendly with improved treatment efficacy. However, long-term clinical studies must be needed for further evaluation.


Molecules ◽  
2021 ◽  
Vol 26 (21) ◽  
pp. 6441
Author(s):  
Justyna Krupa ◽  
Maria Wierzejewska ◽  
Jan Lundell

FTIR spectroscopy was combined with the matrix isolation technique and quantum chemical calculations with the aim of studying complexes of isocyanic acid with sulfur dioxide. The structures of the HNCO…SO2 complexes of 1:1, 1:2 and 2:1 stoichiometry were optimized at the MP2, B3LYPD3, B2PLYPD3 levels of theory with the 6-311++G(3df,3pd) basis set. Five stable 1:1 HNCO⋯SO2 complexes were found. Three of them contain a weak N-H⋯O hydrogen bond, whereas two other structures are stabilized by van der Waals interactions. The analysis of the HNCO/SO2/Ar spectra after deposition indicates that mostly the 1:1 hydrogen-bonded complexes are present in argon matrices, with a small amount of the van der Waals structures. Upon annealing, complexes of the 1:2 stoichiometry were detected, as well.


2021 ◽  
Vol 11 (21) ◽  
pp. 9829
Author(s):  
Kenji Fujii ◽  
Takumi Masuda

In this article, the applicability of mode-adaptive bidirectional pushover analysis (MABPA) to base-isolated irregular buildings was evaluated. The point of the updated MABPA is that the peaks of the first and second modal responses are predicted considering the energy balance during a half cycle of the structural response. In the numerical examples, the main building of the former Uto City Hall, which was severely damaged in the 2016 Kumamoto earthquake, was investigated as a case study for the retrofitting of an irregular reinforced concrete building using the base-isolation technique. The comparisons between the predicted peak response by MABPA and nonlinear time-history analysis results showed that the peak relative displacement can be properly predicted by MABPA. The results also showed that the performance of the retrofitted building models was satisfactory for the ground motion considered in this study, including the recorded motions in the 2016 Kumamoto earthquake.


Tumor Biology ◽  
2021 ◽  
Vol 43 (1) ◽  
pp. 285-306
Author(s):  
Deep A. Patel ◽  
Jonathan Blay

Peripheral human blood is a readily-accessible source of patient material in which circulating tumour cells (CTCs) can be found. Their isolation and characterization holds the potential to provide prognostic value for various solid cancers. Enumeration of CTCs from blood is becoming a common practice in informing prognosis and may guide therapy decisions. It is further recognized that enumeration alone does not capture perspective on the heterogeneity of tumours and varying functional abilities of the CTCs to interact with the secondary microenvironment. Characterizing the isolated CTCs further, in particular assessing their functional abilities, can track molecular changes in the disease progress. As a step towards identifying a suite of functional features of CTCs that could aid in clinical decisions, developing a CTC isolation technique based on extracellular matrix (ECM) interactions may provide a more solid foundation for isolating the cells of interest. Techniques based on size, charge, density, and single biomarkers are not sufficient as they underutilize other characteristics of cancer cells. The ability of cancer cells to interact with ECM proteins presents an opportunity to utilize their full character in capturing, and also allows assessment of the features that reveal how cells might behave at secondary sites during metastasis. This article will review some common techniques and recent advances in CTC capture technologies. It will further explore the heterogeneity of the CTC population, challenges they experience in their metastatic journey, and the advantages of utilizing an ECM-based platform for CTC capture. Lastly, we will discuss how tailored ECM approaches may present an optimal platform to capture an influential heterogeneous population of CTCs.


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