Contrasting 20-year trends in NDVI at two Siberian larch forests with and without multiyear waterlogging-induced disturbances

The fate of a boreal forest may depend on the trend in its normalized difference vegetation index (NDVI), such as whether the NDVI has been increasing significantly over the past few decades. In this study, we analyzed the responses of two Siberian larch forests at Spasskaya Pad and Elgeeii in eastern Siberia to various waterlogging-induced disturbances, using satellite-based NDVI and meteorological data for the 2000–2019 period. The forest at Spasskaya Pad experienced waterlogging (i.e., flooding events caused by abnormal precipitation) during 2005–2008 that damaged canopy-forming larch trees and increased the abundance of water-resistant understory vegetation. By contrast, the forest at Elgeeii did not experience any remarkable disturbance, such as tree dieback or changes in the vegetation community. Significant increasing NDVI trends were found in May and June–August at Elgeeii (p < 0.05), whereas no significant trends were found at Spasskaya Pad (p > 0.05). NDVI anomalies in May and June–August at Elgeeii were significantly associated with precipitation or temperature depending on the season (p < 0.05), whereas no significant relationships were found at Spasskaya Pad (p > 0.05). Thus, the 20-year NDVI trend and NDVI–temperature–precipitation relationship differed between the two larch forests, although no significant trends in temperature or precipitation were observed. These findings indicate that nonsignificant NDVI trends for Siberian larch forests may reflect waterlogging-induced dieback of larch trees, with a concomitant increase in water-resistant understory vegetation.

Variability in Elemental Composition of Conifer Tree Rings

Distribution of chemical elements in tree rings bears important information on various biogeochemical processes. In order to achieve a reliable interpretation of the information, it is necessary to know the degree of variation in the content of chemical elements both at the level of the entire species and at the level of individual trees. The research aims to determine which chemical elements have a stable distribution in the trunks of a number of conifers: Siberian spruce (Picea obovata Ledeb.), Scots pine (Pinus sylvestris L.), Siberian larch (Larix sibirica Ledeb.), and Siberian pine (Pinus sibirica Du Tour). The data for the analysis were obtained on the basis of the long-term experiment in forest growing. The experimental site was laid out in 1971–1972 in the vicinity of Krasnoyarsk by the staff of the Sukachev Institute of Forest of the Siberian Branch of the Russian Academy of Sciences. Before planting the seedlings, the soil ground was mechanically levelled, and thus, sufficiently equal growth conditions were created for all plantings. Cores with a diameter of 12 mm were sampled from three normally developing trees of each species and analyzed using modern X-ray fluorescence methods. Content relative values of elements (counts) were obtained with the Itrax Multiscanner (COX Analytical Systems). The content of elements in the tree rings was characterized by the concentration and reserve of elements. Concentration was calculated as the number of counts per 1 mm2 of the ring area; reserve was calculated as the number of counts over the entire ring area. Each of these variables was defined by the parameters of linear slope in the calendar year series and the standard deviation. The cluster analysis was performed in the 4-dimensional space of the obtained parameters. This allowed determining whether the series of element distributions from different trees and species are grouped. Three elements (Ca, Co, and P) show high stability of distribution parameters in tree rings with no regard to tree species. A number of other elements (Mn, Pb, Cl, Cr, Ni, Sr, and W) are stably grouped depending on the species. The results of the research enable to focus on the study of the elements stably distributed in the conifer trunks. For citation: Gavrikov V.L., Fertikov A.I., Sharafutdinov R.A., Vaganov E.A. Variability in Elemental Composition of Conifer Tree Rings. Lesnoy Zhurnal [Russian Forestry Journal], 2021, no. 6, pp. 24–37. DOI: 10.37482/0536-1036-2021-6-24-37

Radial growth patterns of Siberian larch in plantations of the Republic Mari El

Based on the measurements of 83 wood cores, the main patterns of changes in the width of the early and late zones in the annual ring of Siberian larch trees (Larix sibirica Ledeb.), as well as their total radial growth indices in the conditions of the Republic of Mari El were identified. It was found that the width of the early wood zone varies in trees from 0.15 to 11.3 mm, late wood – from 0.05 to 4.15 mm, the proportion of latewood – from 1.2 to 82.8 %, and the annual growth indices - from 13 to 423 %. The main factor in the variability of the total width of the annual rings and the layer of early wood is the age of the trees, and the contribution of weather conditions and other unaccounted factors (noise) to the overall variance of the annual growth parameters is no more than 20 %. The variability of the total width of the annual ring also depends on their genotypic features, which determine up to 42.7% of the total variance of the parameter in some cenopopulations. In the dynamics of the growth indices of larch trees, despite the existing specifics of each cenopopulation, the general sharp decline in their values after the droughts of 1972 and 2010, as well as the alternation of the periods of growth and decline, is clearly distinguished.

Spatiotemporal dynamics of encroaching tall vegetation in timberline ecotone of the Polar Urals region, Russia

Previous studies discovered a spatially heterogeneous expansion of Siberian larch into the tundra of the Polar Urals (Russia). This study reveals that the spatial pattern of encroachment of tree stands is related to environmental factors including topography and snow cover. Structural and allometric characteristics of trees, along with terrain elevation and snow depth were collected along a transect 860 m long and 80 m wide. Terrain curvature indices, as representative properties, were derived across a range of scales in order to characterize microtopography. A density-based clustering method was used here to analyze the spatial and temporal patterns of tree stems distribution. Results of the topographic analysis suggest that trees tend to cluster in areas with convex surface. The clustering analysis also indicates that the patterns of tree locations are linked to snow distribution. Records from the earliest campaign in 1960 show that trees lived mainly at the middle and bottom of the transect across the areas of high snow depth. As trees expanded uphill with a warming climate in recent decades, the high snow depth areas also shifted upward creating favorable conditions for recent trees growth at locations that were previously covered with heavy snow. The identified landscape signatures of increasing above-ground Arctic biomass in terms of tall vegetation can facilitate scaling to larger area regions.

Characteristics of the photosynthetic apparatus of Pinus sylvestris L. and Larix sibirica Ledeb. from different locations of the Irkutsk region (Eastern Siberia)

The characteristics of the photosynthetic apparatus of coniferous growing in various forest types and climatic conditions of the Irkutsk region (Taishet, Bratsk, Shelekhov, Irkutsk districts) have been explored. The content of photosynthetic pigments, total, free, and bound water in the needles of P. sylvestris and L. sibirica were studied. Using a pulse fluorimeter PAM 2500 (Waltz, Germany), the chlorophyll fluorescence in needles was measured based on such induction curve indices as Fv/Fm, Y(II), NPQ, and ETR. According to the chlorophyll fluorescence induction curve parameters of Scots pine and Siberian larch needles growing in different forest growth conditions, the most effective potential of primary photochemical processes in PSII was observed in Scots pine. While studying the pigment fund of Scots pine and Siberian larch needles, it was found that the highest values of the content of chlorophyll (Chl) a, b, and carotenoids were observed in P. sylvestris and L. sibirica growing in the climatic and forest growth conditions of the Shelekhov district. It is assumed that the revealed characteristics of the parameters reflect the processes of adaptation of the photosynthetic apparatus to various environmental conditions during vegetation development, as well as its high plasticity in different climatic growth conditions.

Genetic Structure and Geographical Differentiation of Larix sibirica Ledeb. in the Urals

The Ural Mountains and the West Eurasian Taiga forests are one of the most important centers of genetic diversity for Larix sibirica Ledeb. Forest fragmentation negatively impacts forest ecosystems, especially due to the impact of their intensive use on the effects of climate change. For the preservation and rational use of forest genetic resources, it is necessary to carefully investigate the genetic diversity of the main forest-forming plant species. The Larix genus species are among the most widespread woody plants in the world. The Siberian larch (Larix sibirica, Pinaceae) is found in the forest, forest-tundra, tundra (Southern part), and forest-steppe zones of the North, Northeast, and partly East of the European part of Russia and in Western and Eastern Siberia; in the Urals, the Siberian larch is distributed fragmentarily. In this study, eight pairs of simple sequence repeat (SSR) primers were used to analyse the genetic diversity and population structure of 15 Siberian larch populations in the Urals. Natural populations in the Urals exhibit indicators of genetic diversity comparable to those of Siberia populations (expected heterozygosity, He = 0.623; expected number of alleles, Ne = 4017; observed heterozygosity, Ho = 0.461). Genetic structure analysis revealed that the examined populations are relatively highly differentiated (Fst = 0.089). Using various algorithms for determining the spatial genetic structure, the examined populations formed three groups according to geographical location. The data obtained are required for the development of species conservation and restoration programs, which are especially important in the Middle Urals, which is the region with strong forest fragmentation.

Hereditary dependence of pigment composition in genus larch needles

The content and ratio of plastid pigments in the conifers of three species of the larch genus (Larix Mill.) were studied: Siberian larch (L. sibirica Ledeb.), Gmelin’s larch (L. Gmelinii (Rupr.) Rupr.), Sukachev’s larch (L. Sukaczewii Dylis). Their seed progeny is concentrated on a pilot site in the Sergachsky forestry of the Nizhny Novgorod region with geographical coordinates 55°32 ‘14,2” N 45°28’01,0” E and an absolute height of 160 m. The site is assigned to the zone of coniferous-broad-leaved forests (the third forest-growing zone) and is included in the area of coniferous-broad-leaved (mixed) forests of the European part of the Russian Federation. The content of chlorophyll a, chlorophyll b and carotenoids in the needles was determined by spectrophotometric method at wavelengths: 665 nm, 649 nm, 452,5 nm. Samples for research were prepared in accordance with the principle of a single logical difference and randomized sample formation. Phenotypic differences in the pigment composition of needles between representatives of these species were revealed. The pigment composition of Siberian larch is dominated by chlorophyll a (3,76 ± 0,12 mg/g), significantly less chlorophyll b (1,87 ± 0,07 mg/g) and even less carotenoids (0,59 ± 0,02 mg/g). The same is observed in the pigment composition of other larch species. The hereditary conditionality of the species specificity of Siberian larch, Gmelin’s larch and Sukachev’s larch was established for all the tested characteristics. The greatest influence (29,84 ± 1,61 %) on the formation of the total phenotypic dispersion was observed in the ratio of the content of chlorophyll-a to the content of carotenoids, the least (5,89 ± 2,16 %) — in the content of dry matter in the needles. Relatively high values were obtained for the proportion of carotenoids (26,74 ± 1,68 %) and the ratio of their content to the total of chlorophylls (26,39 ± 1,69 %). The studied species showed an unequal level of similarity or significant differences in the individual characteristics of the pigment composition of needles.

Repetitive Elements in the Siberian Larch (Larix Sibirica Ledeb.) Nuclear Genome

Background: Repetitive elements (REs) or repeats are sequences that occur multiple times in the genome. They represent a significant part of the gigantic conifer genomes (70-80%) relative to mammals and other plants and complicate whole genome sequencing and annotation. However, REs play important roles in evolution and adaptation processes in both plants and animals. Moreover, amino acid repeats play an important role in plant immunity being a structural element of the products of some disease resistance genes. Analysis of REs in conifer genomes is an important fundamental task.Results: REs were identified de novo and partly classified in the Siberian larch (Larix sibirica Ledeb.) nuclear genome for the first time. In total, 20.9 million REs were detected with the total size of 4.8 Gbp, which comprises about 39% of the 12.3 Gbp larch genome. Resistance genes with leucine-rich repeats (LRRs) were also identified and analyzed in the transcriptome data of autumn buds obtained using RNA-seq.Conclusions: For the first time, REs were identified and classified in the Siberian larch genome and transcriptome. In addition, LRRs and resistance genes were identified and analyzed in the Siberian larch transcriptomes from autumn buds. The larch genome contains twice as less RE compared to other conifers in the same Pinaceae family (39 vs 70-80%), and it might explain why it also has almost twice as smaller genome size (12 vs 18-31 Gbp).

Accumulation of heavy metal pollution caused by traffic in forest trees in the park of Kerey and Janibek Khans of the city of Nur-Sultan, Kazakhstan

Air quality in Nur-Sultan, the fast-growing new capital city of Kazakhstan, has been poorly investigated. This research was carried in Kerey and Janibek Khans Park in Nur-Sultan, the capital city of Kazakhstan, which is affected by “different traffic density” on the roads. Three different categories of contamination (i) high pollution (distance from the main road 10–15 m), (ii) moderate pollution (distance from the side road 15–30 m), and (iii) low pollution (distance from the source of contamination 30–80 m) at different levels resulting from urban transportation were examined. The aim of the study is to determine the pollution accumulation amounts of Ni, Cd, Pb, Cr, Li, Co, Fe, and Zn in five different tree species: Norway spruce (Picea abies /L./ H. Karst.), blue spruce (Picea pungens Engelm.), Scots pine (Pinus sylvestris L.,), Siberian larch (Larix sibirica Ledeb.), and silver birch (Betula pendula Roth). Significant differences in Ni, Cd, Pb, Cr, Li, Co, Fe, and Zn accumulation amounts were determined between three different parts of the park exposed to different levels of contamination. Approximately twice higher Ni, 2.3 times Cd, 3.3 times Pb, 2.7 times Co, 1.6 times Zn accumulation were determined in the area exposed to high pollution than in the parts of the park exposed to low pollution. Cd deposition in the area exposed to high contamination was higher in silver birch than in Scots pine and Norway spruce, while Cr and Co deposition values were higher in Norway spruce than in birch and Scots pine.