Habitat Shift for Plankton: The Living Side of Benthic-Pelagic Coupling in the Mar Piccolo of Taranto (Southern Italy, Ionian Sea)

Resting stages represent the answer for species to the variability of environmental conditions. In confined marine habitats, variability of conditions is high, and bottoms host plankton resting stages in the so-called “marine cyst banks”. The Mar Piccolo of Taranto was chosen as a pilot site in which to investigate how marine cyst banks and plankton affect each other in the living part of the benthic–pelagic coupling. The attempt was based on the use of multiple devices for integrated sampling of benthic and pelagic stages and allowed us to identify 207 taxa/categories in the whole system (127 as active forms, 91 as resting stages). The sediments added 80 taxa to the plankton list obtained only from the water column, thus confirming the importance of this kind of approach in perceiving the actual diversity of the studied site. The sediment cyst bank involved 0.15–1.00% of its content in daily benthic-pelagic exchanges, in terms of cyst germination and import, respectively. In addition, the cyst production, which was higher than the cyst germination, is responsible for the existence of a permanent biological reservoir in the sediments. The benthic-pelagic coupling, however, was completely depicted in the present investigation only for seven taxa. This result is due to the still scant knowledge of the life cycles and life histories of single species. Apart from the identification difficulties that still have to be clarified (which cysts belong to which species), the cycle presence/absence is also characterized by the diversification of strategies adopted by each species. The observation of plankton dynamics from the benthos point of view was useful and informative, unveiling a huge assemblage of resting forms in the sediments only minimally affected by cyst import/export, because it is more devoted to a storing role over long periods. Consequently, the continuation of life cycle studies appears necessary to understand the diversity of strategies adopted by the majority of plankton species.

No Light, No Germination: Excitation of the Rhodospirillum centenum Photosynthetic Apparatus Is Necessary and Sufficient for Cyst Germination

ABSTRACT Rhodospirillum centenum is a Gram-negative alphaproteobacterium that is capable of differentiating into dormant cysts that are metabolically inactive and desiccation resistant. Like spores synthesized by many Gram-positive species, dormant R. centenum cysts germinate in response to an environmental signal, indicating that conditions favor survival and proliferation. Factors that induce germination are called germinants and are often both niche and species specific. In this study, we have identified photosynthesis as a niche-specific germinant for R. centenum cyst germination. Specifically, excitation of wild-type cysts suspended in a nutrient-free buffer with far-red light at >750 nm results in rapid germination. This is in stark contrast to mutant strains deficient in photosynthesis that fail to germinate upon exposure to far-red light under all assayed conditions. We also show that photosynthesis-induced germination occurs in a carbon- and nitrogen-free buffer even in strains that are deficient in carbon or nitrogen fixation. These results demonstrate that photosynthesis not only is necessary for germination but is itself sufficient for the germination of R. centenum cysts. IMPORTANCE Environmental cues that signal Gram-positive spores to germinate (termed germinants) have been identified for several Bacillus and Clostridium species. These studies showed that germinants are niche and species specific. For example, Clostridium difficile spores sense bile salts as a germinant as their presence informs these cells of an intestinal environment. Bacillus fastidiosus spores use uric acid as a germinant that is present in soil and poultry litter as this species inhabits poultry litter. It is evident from these studies that dormant cells sample their environment to assess whether conditions are advantageous for the propagation and survival of vegetative cells. To date, a limited number of germinants have been defined for only a few Gram-positive spore-forming species. Beyond that group, there is scant information on what cues signal dormant cells to exit dormancy. In our study, we show that the versatile Gram-negative photosynthetic bacterium Rhodospirillum centenum uses light-driven photosynthesis, and not the availability of nutrients, to trigger the germination of dormant cysts. This use of light-driven photosynthesis as a germinant is surprising as this species is also capable of growing under dark conditions using exogenous carbon sources for energy. Consequently, photosynthetic growth appears to be the preferred growth mechanism by this species.

The bZIP transcription factor PsBZP32 is involved in cyst germination, oxidative stress response, and pathogenicity of Phytophthora sojae

The basic leucine zipper (bZIP) transcription factor family, one of the largest and most diverse transcription factor families in eukaryotes, is associated with the development and stress responses of many eukaryotic organisms. However, their biological functions in oomycete plant pathogens are unclear. A genome-wide analysis of bZIP transcription factors in Phytophthora sojae showed that PsBZP32, which has a unique bZIP-PAS domain structure, exhibited a high transcription level during the early stages of P. sojae infection. We silenced PsBZP32 in P. sojae and found that the transformants showed defective cyst germination and pathogenicity. The transformants could not eliminate host-derived reactive oxygen species during infection and were more sensitive to oxidative stress. Their response to oxidative stress was independent of the PsBZP32 transcription level; however, subcellular localization and phosphorylation of PsBZP32 were affected by H2O2 stress. These results indicate that PsBZP32 is involved in regulation of P. sojae cyst germination, oxidative stress response, and pathogenicity.

Chemical genetic approach using β-rubromycin reveals that a RIO kinase-like protein is involved in morphological development in Phytophthora infestans

To characterize the molecular mechanisms underlying life-stage transitions in Phytophthora infestans, we initiated a chemical genetics approach by screening for a stage-specific inhibitor of morphological development from microbial culture extracts prepared mostly from actinomycetes from soil in Japan. Of the more than 700 extracts, one consistently inhibited Ph. infestans cyst germination. Purification and identification of the active compound by ESI–MS, 1H-NMR, and 13C-NMR identified β-rubromycin as the inhibitor of cyst germination (IC50 = 19.8 μg/L); β-rubromycin did not inhibit growth on rye media, sporangium formation, zoospore release, cyst formation, or appressorium formation in Ph. infestans. Further analyses revealed that β-rubromycin inhibited the germination of cysts and oospores in Pythium aphanidermatum. A chemical genetic approach revealed that β-rubromycin stimulated the expression of RIO kinase-like gene (PITG_04584) by 60-fold in Ph. infestans. Genetic analyses revealed that PITG_04584, which lacks close non-oomycete relatives, was involved in zoosporogenesis, cyst germination, and appressorium formation in Ph. infestans. These data imply that further functional analyses of PITG_04584 may contribute to new methods to suppress diseases caused by oomycetes.

The consensus Nglyco-X-S/T motif and a previously unknown Nglyco-N -linked glycosylation are necessary for growth and pathogenicity of Phytophthora

Asparagine (Asn, N) -linked glycosylation within the glycosylation motif (Nglyco-X-S/T; X≠P) is a ubiquitously distributed post-translational modification that participates in diverse eukaryotic cellular processes. However, little is known about the characteristic features and roles of N-glycosylation in oomycetes. In this work, it found that 2.5 μg/ml tunicamycin (N-glycosylation inhibitor) completely inhibited Phytophthora sojae growth, suggesting that N-glycosylation is necessary for oomycete development. We conducted a glycoproteomic analysis of P. sojae to identify and map all N-glycosylated proteins and to quantify differentially expressed glycoproteins associated with mycelia, asexual cysts, and sexual oospores. A total of 355 N-glycosylated proteins were found, containing 496 glycosites that likely participate in glycan degradation, carbon metabolism, glycolysis, or other central metabolic pathways. To verify the glycoproteomic results and further examine the function of N-glycosylation in P. sojae, two proteins were selected for PNGase F deglycosylation assays and CRISPR/Cas9-mediated site-directed mutagenesis, including a GPI transamidase protein (GPI16) up-regulated in cysts, with the consensus Nglyco-X-S/T motif at Asn 94, and a heat shock protein 70 (HSP70) up-regulated in cysts and oospores with a previously unknown Nglyco-N motif at Asn 270. We demonstrated that the GPI16 and HSP70 are both N-glycosylated proteins, confirming that the Nglyco-N motif is a target site for asparagine - oligosaccharide N-glycosidic linkage. Glycosite mutations of Asn 94 in the GPI16 led to impaired cyst germination and pathogenicity, while HSP70 mutants exhibited decreased cyst germination and oospore production. This work describes an integrated map of oomycete N-glycoproteomes and advances our understanding of N-glycosylation in oomycetes. Moreover, we confirm that the consensus Nglyco-X-S/T and the Nglyco-N -linked glycosites are both essential for the growth of Phytophthora sojae, indicating that there are multiple N-glycosylation motifs in oomycetes.