GENETIC ASSOCIATION OF HYPOXIA INDUCIBLE FACTOR (HIF) – 1 ALPHA GENE AND RESIDUAL RIDGE RESORPTION OF JAW BONE

Due to considerable alterations in individual bone structure, the residual ridge is constantly under the stress of bone resorption. In certain circumstances, this can cause disproportionate bone deterioration, making restorative dental management difficult. This inimitable curative procedure in the oral cavity is affected by specific factors in the oral tissue. A variety of HIFs are expressed during the healing of oral wounds in comparison to skin wounds. The target of this review article was to look at a cistron tic connotation among SNP of the HIF-1 α gene that is understood to own great genetic diversity, and also the residual ridge reabsorption (RRR). Hence, this review concentrates on the association and genetic basis of HIF α gene in residual ridge resorption.

Genetic Diversity in Almond (Prunus dulcis)

Almond (Prunus dulcis), a stone fruit belonging to a family Rosaceae (rose) is broadly cultivated for ornament and fruit. Within this genus, the almond is very much associated with the peach, and these two fruits share the same subgenus the Amygdalus. About 430 species are spread all through the northern temperate regions of the world. The Mediterranean climate region of the Middle East like Turkey and Pakistan eastward to Syria is native to the almond and its related species. Almond is one of the ancient fruit trees known to the Asian as well as European regions with the most primitive proof of cultivation dating about 2000 B.C. Prunus dulcis (Almond) is a nutrient-loaded nut crop. Almond possesses a great genetic diversity due to the genetically controlled self-incompatibility system which can be estimated by a morphological characteristic including molecular markers and isoenzymes with a wide range of marker techniques. Simple sequence repeats (SSR) involving RFLP or SNP are the most commonly used molecular techniques among the DNA-based molecular symbols. Particular agronomic characters, e.g. kernel bitterness or self-compatibility can also be traced by these molecular markers. The direct association between the level of diversity and the basis of the germplasm cannot be understood by the studies of genetic diversity. Genetic diversity cannot be seriously lost by self-compatibility in almonds. The breeding, conservation, and cultivation of wild-growing almonds may similarly advantageous after the genetic diversity research studies (especially those applying molecular markers).

Genetic and physiological diversity of white Spanish broom (Chamaecytisus albus) endophytes

Chamaecytisus albus (Spanish broom) is a legume shrub that can be found in only one natural locality in Poland. This specimen is critically endangered; therefore, different actions focusing on protection of this plant in the natural habitat are undertaken, and one of them involves studies of the population of Chamaecytisus albus bacterial endophytes, which in the future could be used as bioprotectants and/or biofertilizers. A collection of 94 isolates was obtained from Spanish broom nodules, and the physiological and genetic diversity of these strains was studied. A few potentially beneficial traits were detected, i.e. secretion of cellulases (66 isolates), production of siderophores (60 isolates), phosphate solubilization (25 isolates), and production of IAA (58 isolates), indole (16 isolates), or HCN (3 isolates). Twenty-nine of the 94 tested isolates were able to induce the development of root nodules in plants grown in vitro and can therefore be assumed as Chamaecytisus albus symbionts. Genome fingerprinting by BOX-PCR, as well as gyrB and nodZ gene sequencing revealed a great genetic diversity of specimens in the collection. The symbiotic isolates were classified in different clades, suggesting they could belong to different species, however, most of them revealed sequence similarity to Bradyrhizobium genus.

Biodiversity and Phylogenetic Relationship of Total Hydrocarbon Degrading Genes in Selected Bacteria Species

Hydrocarbons which forms the bulk of soil and water pollutants in the Niger Delta region of Nigeria differs in their susceptibility to microbial attack and degradation. Considering the importance of hydrocarbons in the economy of any nation, a complete knowledge of the hydrocarbons degrading capabilities of associated microbial species becomes increasingly important and indispensable. The research was aimed at assessing the biodiversity and phylogenetic relationship of hydrocarbon degrading genes in selected bacteria species. Sequences of nucleotides and amino acids of hydrocarbons degrading genes in 12 species of bacteria such as Pseudomonas aeruginosa I & II, P. stutgeni, Thalassosqir spp. I & II, Alcavorox spp., Arthrobacter spp., Martellela spp., P. taenensis, Aneuribacillus species, Rhodococcus spp. and Uncultured bacteria, were retrieved from the National Center for Biotechnology Information (NCBI) and analysed for their variability in physicochemical properties, percentage identity and similarity, G-C content, secondary and tertiary structures, their biodiversity and their phylogenetic relationship using MEGA 6 soft-wares, GOR IV, Phyre, Genscan and SIB Protparam. The analysis showed great genetic diversity and polymorphism in the hydrocarbon degrading genes present in the bacteria species. The phylogenetic tree showed that the genes in most species had undergone mutation. Martella spp had the highest probability or chance of mutating with E-value of 7e-129. Only two of the bacteria species had low instability index indicating that majority of the bacteria species contains or possessed the unstable nature of the hydrocarbon degrading genes. The biodiversity of bacterial species and their genetic distance was ascertained.

Genetic Diversity of Cryptosporidium Spp. in Njoro Sub County, Nakuru, Kenya

Cryptosporidium spp. cause Cryptosporidiosis in humans through zoonotic and anthroponotic transmission. Previous studies have illustrated the significance of domestic animals as reservoirs of this parasite. However, there is no information on the Cryptosporidium spp. and genotypes circulating in Njoro Sub County. A total of 2174 samples from humans, cattle, chicken, sheep and goats were assessed for presence of Cryptosporidium spp. Thirty-three positive samples were successfully sequenced. The sequences obtained were compared to Cryptosporidium sequences in the GenBank using NCBI’s (National Center for Biotechnology Information) online BLAST (Basic Local Alignment Search Tool) algorithmic program. Sequence alignment was done using the Clustal W program and phylogenetic analysis was executed in MEGA 6 (Molecular Evolutionary Genetics Analysis version 6.0). The Cryptosporidium spp. present in the watershed showed great genetic diversity with nine (9) Cryptosporidium spp. namely: C. parvum, C. hominis, C. ubiquitum, C. meleagridis, C. andersoni, C. baileyi, C. muris, C. xiaoi and C. viatorum. Cattle were the biggest reservoirs of zoonotic Cryptosporidium spp. hence a potential source of zoonosis in humans while goats had the least species. This is the first study that reported presence of C. viatorum in Kenya.

Morpho-agronomic, biochemical and molecular analysis of genetic diversity in the Mesoamerican common bean panel

The common bean (Phaseolus vulgaris L.) is of great importance to the food and nutritional security of many populations, and exploitation of the crop’s genetic diversity is essential for the success of breeding programs. Thus, the aim of the present study was to evaluate the genetic diversity of 215 common bean accessions, which included cultivars, obsolete cultivars, improved lines, and landraces using morpho-agronomic and biochemical traits, and amplified fragment length polymorphism markers (AFLP). Genetic parameters, box plots, Pearson’s correlation analysis, and Ward’s hierarchical clustering were used to analyze the data. The Jaccard similarity coefficient and neighbour-joining clustering method were used for molecular analysis. A wide variability among the accessions was observed for morpho-agronomic and biochemical traits. Selective accuracy (Ac) and broad-sense heritability (h2) values were high to intermediate for all traits, except seed yield. Ward’s hierarchical clustering analysis generated six groups. AFLP analysis also revealed significant differences among the accessions. There was no correlation between the differences based on genetic markers and those based on morpho-agronomic and biochemical data, which indicates that both datasets are important for elucidating the differences among accessions. The results of the present study indicate great genetic diversity among the evaluated accessions.

Allelic and Genotypic Frequencies of NAT2, CYP2E1 and AADAC genes in a cohort of Peruvian Tuberculosis Patients

BackgroundWe determined the frequency of genetic polymorphisms in three anti-TB drug metabolic proteins previously reported: N-acetyltransferase 2 (NAT2), cytochrome P450 2E1 (CYP2E1) and arylacetamide deacetylase (AADAC) within a Peruvian population in a cohort of TB patients. We included 395 participants completed their anti-tuberculosis treatment.Results∼74% of the participants are carriers of slow metabolizer genotypes: NAT2*5, NAT2*6 and NAT2*7, which increase the sensitivity of INH at low doses and increase the risk of drug-induced liver injuries. ∼ 64% are homozygous for the wild-type CYP2E1*1A allele, which could increase the risk of hepatotoxicity. However, 16% had a NAT2 fast metabolizer phenotype which could increase the risk of acquiring resistance to INH, thereby increasing the risk of multidrug-resistant (MDR) or treatment failure. The frequency of rs1803155 (AADAC*2 allele) was higher (99.9%) in Peruvians than in in European American, African American, Japanese, and Korean populations.ConclusionsThis high prevalence of slow metabolizers for Isoniazid in the Peruvian population should be further studied and considered to help individualize drug regimens, especially in countries with a great genetic diversity like Peru. These data will help the Peruvian National Tuberculosis Control Program develop new strategies for therapies.

First Detection of the West Nile Virus Koutango Lineage in Sandflies in Niger

West Nile virus (WNV), belonging to the Flaviviridae family, causes a mosquito-borne disease and shows great genetic diversity, with at least eight different lineages. The Koutango lineage of WNV (WN-KOUTV), mostly associated with ticks and rodents in the wild, is exclusively present in Africa and shows evidence of infection in humans and high virulence in mice. In 2016, in a context of Rift Valley fever (RVF) outbreak in Niger, mosquitoes, biting midges and sandflies were collected for arbovirus isolation using cell culture, immunofluorescence and RT-PCR assays. Whole genome sequencing and in vivo replication studies using mice were later conducted on positive samples. The WN-KOUTV strain was detected in a sandfly pool. The sequence analyses and replication studies confirmed that this strain belonged to the WN-KOUTV lineage and caused 100% mortality of mice. Further studies should be done to assess what genetic traits of WN-KOUTV influence this very high virulence in mice. In addition, given the risk of WN-KOUTV to infect humans, the possibility of multiple vectors as well as birds as reservoirs of WNV, to spread the virus beyond Africa, and the increasing threats of flavivirus infections in the world, it is important to understand the potential of WN-KOUTV to emerge.

From neolithic to late modern period: Brief history of wheat

History of wheat cultivation is as long as history of civilization. Adaptation of nature, animal domestication and plant cultivation, enabled transition from nomadism to sedentism 12,000 years ago, portraying the rise of Homo sapiens of today. First civilization, Mesopotamia aroused around 4000 B.C.E, in the riverbanks of Tiger and Euphrates, where carbon-14 dating revealed that tetraploid wild emmer (Triticum turgidum subsp. dicoccoides) was grown. Due to modest cultivation requirements and high nutritional value, wheat quickly spread from its centre of origin throughout the world. Generations of farmers have chosen seeds from plants with best architecture, adapted to local conditions for sowing, striving toward constant improvement of yields. For centuries agricultural production was based on locally adapted wheat varieties of great genetic diversity. Agriculture completely changed its course in mid-XX century as a result of Green Revolution, introduction of high-yielding cereal varieties, chemical fertilizers and pesticides, irrigation and mechanization replacing traditional techniques. The flourishing of agriculture has drastically changed the course of agricultural development and global society. Improvement of agricultural techniques by integrating scientific advancements and knowledge to assimilate environmental factors has tripled wheat yields in last 50 years. Today, wheat, maize and rice, represent staple food for humanity.

Vegetative rescue of Cedrela fissilis Vell. by the rooting of cuttings from epicormic and canopy sprouts

ABSTRACT: Cedrela fissilis is a species of great genetic diversity, with low population density and seminal propagation, which causes difficulties in the vegetative propagation process. This research evaluated the vegetative rescue and propagation of stem cutting rooting originated from epicormic and canopy sprouts of C. fissilis. For this, the induction of epicormic sprouts was evaluated 52 days after the complete girdling and semi-girdling 20 and 40 cm from the ground, and no girdling treatment, during spring (2018), summer (2018) and autumn (2019). The variables evaluated were, survival (%), sprouting (%), number, length (cm) and diameter (mm) of sprouts. The cuttings were made from spring epicormic sprouts, divided in two categories: 10 cm cuttings placed vertically in pits and 5 cm cuttings placed horizontally in furrows. The canopy sprouts were collected in the summer, then cut in apical and intermediate cuttings (15 cm). After 60 days, the cuttings were evaluated in survival (%), rooting (%), callus (%), average number and length of roots (cm). Results showed that only the complete girdling produced sprouts (average >67%) with no difference between 20 and 40 cm heights, with a greater number of sprouts during spring. The cuttings from epicormic sprouts, planted vertically in pits presented higher percentage of rooting (44%) than cuttings planted horizontally in furrows (17%). Cuttings from the canopy had inconsiderable rooting (apical - 2%; intermediate - 0%). The girdling periods influences the number of epicormic sprouts and its use for cutting was more efficient in rooting.