scholarly journals A comparison of machine learning methods for survival analysis of high-dimensional clinical data for dementia prediction

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Annette Spooner ◽  
Emily Chen ◽  
Arcot Sowmya ◽  
Perminder Sachdev ◽  
Nicole A. Kochan ◽  
...  

AbstractData collected from clinical trials and cohort studies, such as dementia studies, are often high-dimensional, censored, heterogeneous and contain missing information, presenting challenges to traditional statistical analysis. There is an urgent need for methods that can overcome these challenges to model this complex data. At present there is no cure for dementia and no treatment that can successfully change the course of the disease. Machine learning models that can predict the time until a patient develops dementia are important tools in helping understand dementia risks and can give more accurate results than traditional statistical methods when modelling high-dimensional, heterogeneous, clinical data. This work compares the performance and stability of ten machine learning algorithms, combined with eight feature selection methods, capable of performing survival analysis of high-dimensional, heterogeneous, clinical data. We developed models that predict survival to dementia using baseline data from two different studies. The Sydney Memory and Ageing Study (MAS) is a longitudinal cohort study of 1037 participants, aged 70–90 years, that aims to determine the effects of ageing on cognition. The Alzheimer's Disease Neuroimaging Initiative (ADNI) is a longitudinal study aimed at identifying biomarkers for the early detection and tracking of Alzheimer's disease. Using the concordance index as a measure of performance, our models achieve maximum performance values of 0.82 for MAS and 0.93 For ADNI.

Author(s):  
Adwait Patil

Abstract: Alzheimer’s disease is one of the neurodegenerative disorders. It initially starts with innocuous symptoms but gradually becomes severe. This disease is so dangerous because there is no treatment, the disease is detected but typically at a later stage. So it is important to detect Alzheimer at an early stage to counter the disease and for a probable recovery for the patient. There are various approaches currently used to detect symptoms of Alzheimer’s disease (AD) at an early stage. The fuzzy system approach is not widely used as it heavily depends on expert knowledge but is quite efficient in detecting AD as it provides a mathematical foundation for interpreting the human cognitive processes. Another more accurate and widely accepted approach is the machine learning detection of AD stages which uses machine learning algorithms like Support Vector Machines (SVMs) , Decision Tree , Random Forests to detect the stage depending on the data provided. The final approach is the Deep Learning approach using multi-modal data that combines image , genetic data and patient data using deep models and then uses the concatenated data to detect the AD stage more efficiently; this method is obscure as it requires huge volumes of data. This paper elaborates on all the three approaches and provides a comparative study about them and which method is more efficient for AD detection. Keywords: Alzheimer’s Disease (AD), Fuzzy System , Machine Learning , Deep Learning , Multimodal data


2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Morshedul Bari Antor ◽  
A. H. M. Shafayet Jamil ◽  
Maliha Mamtaz ◽  
Mohammad Monirujjaman Khan ◽  
Sultan Aljahdali ◽  
...  

Alzheimer’s disease has been one of the major concerns recently. Around 45 million people are suffering from this disease. Alzheimer’s is a degenerative brain disease with an unspecified cause and pathogenesis which primarily affects older people. The main cause of Alzheimer’s disease is Dementia, which progressively damages the brain cells. People lost their thinking ability, reading ability, and many more from this disease. A machine learning system can reduce this problem by predicting the disease. The main aim is to recognize Dementia among various patients. This paper represents the result and analysis regarding detecting Dementia from various machine learning models. The Open Access Series of Imaging Studies (OASIS) dataset has been used for the development of the system. The dataset is small, but it has some significant values. The dataset has been analyzed and applied in several machine learning models. Support vector machine, logistic regression, decision tree, and random forest have been used for prediction. First, the system has been run without fine-tuning and then with fine-tuning. Comparing the results, it is found that the support vector machine provides the best results among the models. It has the best accuracy in detecting Dementia among numerous patients. The system is simple and can easily help people by detecting Dementia among them.


Recent research in computational engineering have evidenced the design and development numerous intelligent models to analyze medical data and derive inferences related to early diagnosis and prediction of disease severity. In this context, prediction and diagnosis of fatal neurodegenerative diseases that comes under the class of dementia from medical image data is considered as the challenging area of research for many researchers. Recently Alzheimer’s disease is considered as major category of dementia that affects major population. Despite of the development of numerous machine learning models for early diagnosis of Alzheimer’s disease, it is observed that there is a lot more scope of research. Addressing the same, this article presents a systematic literature review of machine learning techniques developed for early diagnosis of Alzheimer’s disease. Furthermore this article includes major categories of machine learning algorithms that include artificial neural networks, Support vector machines and Deep learning based ensemble models that helps the budding researchers to explore the scope of research in predicting Alzheimer’s disease. Implementation results depict the comparative analysis of state of art machine learning mechanisms.


2020 ◽  
Vol 10 (11) ◽  
pp. 879
Author(s):  
Angela Lombardi ◽  
Nicola Amoroso ◽  
Domenico Diacono ◽  
Alfonso Monaco ◽  
Giancarlo Logroscino ◽  
...  

Modeling disease progression through the cognitive scores has become an attractive challenge in the field of computational neuroscience due to its importance for early diagnosis of Alzheimer’s disease (AD). Several scores such as Alzheimer’s Disease Assessment Scale cognitive total score, Mini Mental State Exam score and Rey Auditory Verbal Learning Test provide a quantitative assessment of the cognitive conditions of the patients and are commonly used as objective criteria for clinical diagnosis of dementia and mild cognitive impairment (MCI). On the other hand, connectivity patterns extracted from diffusion tensor imaging (DTI) have been successfully used to classify AD and MCI subjects with machine learning algorithms proving their potential application in the clinical setting. In this work, we carried out a pilot study to investigate the strength of association between DTI structural connectivity of a mixed ADNI cohort and cognitive spectrum in AD. We developed a machine learning framework to find a generalized cognitive score that summarizes the different functional domains reflected by each cognitive clinical index and to identify the connectivity biomarkers more significantly associated with the score. The results indicate that the efficiency and the centrality of some regions can effectively track cognitive impairment in AD showing a significant correlation with the generalized cognitive score (R = 0.7).


NeuroImage ◽  
2018 ◽  
Vol 183 ◽  
pp. 401-411 ◽  
Author(s):  
Ramon Casanova ◽  
Ryan T. Barnard ◽  
Sarah A. Gaussoin ◽  
Santiago Saldana ◽  
Kathleen M. Hayden ◽  
...  

Pain Medicine ◽  
2015 ◽  
Vol 16 (7) ◽  
pp. 1386-1401 ◽  
Author(s):  
Patrick J. Tighe ◽  
Christopher A. Harle ◽  
Robert W. Hurley ◽  
Haldun Aytug ◽  
Andre P. Boezaart ◽  
...  

Sensors ◽  
2021 ◽  
Vol 21 (3) ◽  
pp. 778
Author(s):  
Nitsa J. Herzog ◽  
George D. Magoulas

Early identification of degenerative processes in the human brain is considered essential for providing proper care and treatment. This may involve detecting structural and functional cerebral changes such as changes in the degree of asymmetry between the left and right hemispheres. Changes can be detected by computational algorithms and used for the early diagnosis of dementia and its stages (amnestic early mild cognitive impairment (EMCI), Alzheimer’s Disease (AD)), and can help to monitor the progress of the disease. In this vein, the paper proposes a data processing pipeline that can be implemented on commodity hardware. It uses features of brain asymmetries, extracted from MRI of the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database, for the analysis of structural changes, and machine learning classification of the pathology. The experiments provide promising results, distinguishing between subjects with normal cognition (NC) and patients with early or progressive dementia. Supervised machine learning algorithms and convolutional neural networks tested are reaching an accuracy of 92.5% and 75.0% for NC vs. EMCI, and 93.0% and 90.5% for NC vs. AD, respectively. The proposed pipeline offers a promising low-cost alternative for the classification of dementia and can be potentially useful to other brain degenerative disorders that are accompanied by changes in the brain asymmetries.


2019 ◽  
Vol 8 (3) ◽  
pp. 7964-7967

Alzheimer’s is a neurodegenerative disease which can eventually leads to dementia. Mostly occurring in elderly people over the age of 65, it is hard to detect and diagnose correctly. Most common symptoms include memory loss and slow deterioration of cognitive functions. Given that these symptoms are seen often in old people, this hinders the detection of Alzheimer’s disease (AD). Alzheimer’s is currently incurable, but detection of the disease during its early stage is often beneficial to the patient, since there are treatments which can considerably improve the quality of life of the patient. However this can only be done if the patient has been diagnosed at a stage before any permanent brain damage has been done. Most of the current methods for detecting and diagnosing AD are not good enough. It is the need of the hour to develop better and early diagnostic tools. With the improvements in the field of machine learning, we now have the tools needed to drastically improve detection of Alzheimer’s. We examine various machine learning methods and algorithms to find a method which can boost the chances of detecting the disease. We will use the following algorithms: Decision Tree, SVM, Random Forest and Adaboost. The dataset being used is the longitudinal MRI data available included in the OASIS dataset. We will use the aforementioned algorithms on the dataset and compare the accuracies achieved to find an optimal.


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