scholarly journals Anthropogenic transport of species across native ranges: unpredictable genetic and evolutionary consequences

2016 ◽  
Vol 12 (10) ◽  
pp. 20160620 ◽  
Author(s):  
Jamie Hudson ◽  
Frédérique Viard ◽  
Charlotte Roby ◽  
Marc Rius
Keyword(s):  
Population Structure ◽  
Genetic Differentiation ◽  
Human Activities ◽  
Native Species ◽  
Marine Invertebrate ◽  
Anthropogenic Activities ◽  
Indigenous Species ◽  
Genetic Patterns ◽  
Geographical Distances ◽  
Anthropogenic Transport

Human activities are responsible for the translocation of vast amounts of organisms, altering natural patterns of dispersal and gene flow. Most research to date has focused on the consequences of anthropogenic transportation of non-indigenous species within introduced ranges, with little research focusing on native species. Here, we compared genetic patterns of the sessile marine invertebrate, Ciona intestinalis , which has highly restricted dispersal capabilities. We collected individuals in a region of the species' native range where human activities that are known to facilitate the artificial spread of species are prevalent. Using microsatellite markers, we revealed highly dissimilar outcomes. First, we found low levels of genetic differentiation among sites separated by both short and large geographical distances, indicating the presence of anthropogenic transport of genotypes, and little influence of natural geographical barriers. Second, we found significant genetic differentiation in pairwise comparisons among certain sites, suggesting that other factors besides artificial transport (e.g. natural dispersal, premodern population structure) may be shaping genetic patterns. Taken together, we found dissimilar patterns of population structure in a highly urbanized region that could not be predicted by artificial transport alone. We conclude that anthropogenic activities alter genetic composition of native ranges, with unknown consequences for species' evolutionary trajectories.

scholarly journals A multi-approach analysis of the genetic diversity in populations of Astyanax aff. bimaculatus Linnaeus, 1758 (Teleostei: Characidae) from Northeastern Brazil

2008 ◽  
Vol 6 (4) ◽  
pp. 621-630 ◽  
Author(s):  
Vanessa de Carvalho Cayres Pamponet ◽  
Paulo Luiz Souza Carneiro ◽  
Paulo Roberto Antunes de Mello Affonso ◽  
Viviam Souto Miranda ◽  
Juvenal Cordeiro Silva Júnior ◽  
...  
Keyword(s):  
Population Structure ◽  
Human Activities ◽  
Evolutionary History ◽  
Main Channel ◽  
Northeastern Brazil ◽  
Dam Reservoir ◽  
Effective Barrier ◽  
Significant Difference ◽  
Genetic Patterns ◽  
Structure Index

Few reports are available about the ichthyofauna of typical semi-arid rivers, although the regional diversity has been constantly threatened by human activities, mainly related to impoundment and construction of dams. The goal of the present work was to evaluate using different methods, the population genetic structure of a characin fish, Astyanax aff. bimaculatus, widespread throughout hydrographic basins of Bahia, Northeastern Brazil. Morphological (meristic and morphometric data), cytogenetic (karyotype and Ag-NOR), and molecular (RAPD and SPAR) analyses were carried out in specimens collected upstream and downstream of Pedra Dam, in the main channel of Contas River (Contas River Basin), and in the Mineiro stream, which belongs to the adjacent Recôncavo Sul basin. Few external differences were detected among populations, where the individuals collected upstream of Pedra Dam were slightly larger than the others. Cytogenetic data also showed a similar karyotypic pattern (2n=50; 6m+28sm+12st+4a; FN= 96) and NORs located on the short arms of up to two chromosome pairs, with numerical inter- and intra-populational variation. Nonetheless, RAPD and SPAR analyses differentiated reliably the three populations, revealing striking differences in the allele frequencies among the localities studied and a significant difference in population structure index (Fst=0.1868, P<0.0001). The differences between populations within a same river were as significant as those between distinct hydrographic basins, indicating that the dam/reservoir represents an effective barrier to gene flow. Additionally, environmental peculiarities from each locality are also believed to influence the genetic patterns detected herein. On the other hand, the similarity between samples from Contas River and Recôncavo Sul basins could be related to a common evolutionary history, since both basins are geographically close to each other. Finally, the present study shows that a multi-approach analysis is particularly useful in identifying the population structure of widely distributed species and to evaluate the impacts of human activities on natural fish populations.

scholarly journals Impacts of land use and invasive species on native avifauna of Mo’orea, French Polynesia

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3761 ◽  
Author(s):  
Vanessa M. ZoBell ◽  
Brett J. Furnas
Keyword(s):  
Environmental Change ◽  
Native Species ◽  
Anthropogenic Activities ◽  
Bird Species ◽  
Hierarchical Cluster ◽  
French Polynesia ◽  
Oceanic Islands ◽  
Indigenous Species ◽  
Natural Habitats ◽  
Calling Activity

Oceanic islands are among the most endemically biodiverse ecosystems in the world. They have been adversely impacted by human expansion, which affects regional biodiversity by altering the natural habitats of vulnerable, indigenous species. Birds represent a valuable indicator species of environmental change due to their ability to adapt quickly. Investigating the relationship between environmental change, abundance, and behaviors of birds can help us better anticipate potential impacts to island ecosystems. In addition, we can understand the population trends and restricted ranges of native avifauna, identify the regions needing protection, and assess habitat vulnerability linked to anthropogenic activities. In Mo’orea, French Polynesia, we studied nine passerine bird species using automated acoustic recording devices placed in agricultural, forested, and mixed habitats. Based on call counts per unit time and occupancy modeling, we found evidence that three non-native species preferred agricultural areas and low-canopy cover over dense forested areas. Furthermore, native bird detectability and possibly abundance was significantly lower than non-native birds. Using hierarchical cluster analysis to support inferences regarding behavioral differences, we found that native bird calling activity was negatively associated with non-native bird calling activity. Altogether, these results suggest native bird populations are at risk in all of the habitats studied, but forests serve as a potential refuge.

RESEARCH ON THE BOTANICAL AND PHARMACOGNOSTIC PARTICULARITIES OF THE INDIGENOUS SPECIES LYSIMACHIA NUMMULARIA L.

2021 ◽  
Author(s):  
Suciu Felicia ◽  
Arcuș Mariana ◽  
Roșca Adrian Cosmin ◽  
Bucur Laura ◽  
Popescu Antoanela ◽  
...  
Keyword(s):  
Chemical Analysis ◽  
Native Species ◽  
Reproductive Organs ◽  
Indigenous Species ◽  
External Appearance ◽  
Vegetative Organs ◽  
Naked Eye ◽  
Hydrophilic Nature ◽  
Macroscopic Examination

"Preliminary pharmacochemical research on Lysimachia nummularia L. was performed by dint of pharmacognostic analysis (macroscopic examination, global chemical analysis, preliminary quantitative determinations).The article includes the analysis of the macroscopic characters of the vegetative organs (root, stem and leaf), as well as of the reproductive organs (flower, fruit, seed) belonging to the spontaneous native species Lysimachia nummularia L. Morphological features were described and discussed. The identification of these aspects was done with the naked eye, but also with the help of a hand magnifier and a binocular magnifier. The results revealed that the external appearance of the plant justifies the species belonging to the genus Lysimachia, family Primulaceae. They are found in the glabrous and creeping appearance of the plant, opposite, almost round leaves, solitary, yellow flowers, axillary with vigorous pedicels, perianth pentamer, actinomorphic, dialisepal and dialipetal, globular capsule fruit. The semi-hydrophilic nature is found in the presence of adventitious roots that develop both from the rhizome and at the nodes of the stem. The preliminary quantitative determinations performed were loss by drying as well as soluble substances of the species Lysimachia nummularia L. Following the global chemical analysis, active principles known in the literature for the antioxidant potential were identified. Following the preliminary quantitative determinations (drying loss, determination of soluble substances) results comparable to those in the literature on the content of volatile substances and soluble substances were obtained."

Radiocarbon dating of individual foram tests show that alleged Lessepsian species are of Holocene age

2021 ◽  
Author(s):  
Paolo G. Albano ◽  
Anna Sabbatini ◽  
Jonathan Lattanzio ◽  
Jan Steger ◽  
Sönke Szidat ◽  
...  
Keyword(s):  
Mediterranean Sea ◽  
Red Sea ◽  
Native Species ◽  
Radiocarbon Dating ◽  
Suez Canal ◽  
Tropical Species ◽  
Indigenous Species ◽  
Last Interglacial ◽  
Sediment Depth ◽  
The Mediterranean

&lt;p&gt;The Lessepsian invasion &amp;#8211; the largest marine biological invasion &amp;#8211; followed the opening of the Suez Canal in 1869 (81 years BP). Shortly afterwards, tropical species also distributed in the Red Sea appeared on Mediterranean shores: it was the dawn of what would become the invasion of several hundred tropical species. The time of the Suez Canal opening coincided with an acceleration in natural history exploration and description, but the eastern sectors of the Mediterranean Sea lagged behind and were thoroughly explored only in the second half of the 20&lt;sup&gt;th&lt;/sup&gt; century. Many parts are still insufficiently studied today. Baseline information on pre-Lessepsian ecosystem states is thus scarce. This knowledge gap has rarely been considered by invasion scientists: every new finding of species belonging to tropical clades has been assumed to be a Lessepsian invader.&lt;/p&gt;&lt;p&gt;We here question this assumption by radiocarbon dating seven individual tests of miliolids &amp;#8211; imperforated calcareous foraminifera &amp;#8211; belonging to five alleged non-indigenous species. Tests were found in two sediment cores collected at 30 and 40 m depth off Ashqelon, on the Mediterranean Israeli shelf. We dated one &lt;em&gt;Cribromiliolinella milletti &lt;/em&gt;(core at 40 m, 20 cm sediment depth), three &lt;em&gt;Nodophthalmidium antillarum &lt;/em&gt;(core at 40 m, 35 cm sediment depth), one &lt;em&gt;Miliolinella &lt;/em&gt;cf. &lt;em&gt;fichteliana &lt;/em&gt;(core at 30 m, 110 cm sediment depth), one &lt;em&gt;Articulina alticostata &lt;/em&gt;(core at 40 m, 35 cm sediment depth) and one &lt;em&gt;Spiroloculina antillarum &lt;/em&gt;(core at 30 m, 110 cm sediment depth). All foraminiferal tests proved to be of Holocene age, with a median calibrated age spanning between 749 and 8285 years BP. Only one test of &lt;em&gt;N. antillarum&lt;/em&gt; showed a 2-sigma error overlapping the time of the opening of the Suez Canal, but with a median age of 1123 years BP. Additionally, a thorough literature search resulted in a further record of &lt;em&gt;S. antillarum&lt;/em&gt; in a core interval dated 1820&amp;#8211;2064 years BP in Turkey.&lt;/p&gt;&lt;p&gt;Therefore, these foraminiferal species are not introduced, but native species. They are all circumtropical or Indo-Pacific and in the Mediterranean distributed mostly in the eastern sectors (only &lt;em&gt;S. antillarum&lt;/em&gt; occurs also in the Adriatic Sea). Two hypotheses can explain our results: these species are Tethyan relicts that survived the Messinian salinity crisis (5.97&amp;#8211;5.33 Ma) and the glacial periods of the Pleistocene in the Eastern Mediterranean, which may have never desiccated completely during the Messinian crisis and which may have worked as a warm-water refugium in the Pleistocene; or they entered the Mediterranean Sea from the Red Sea more recently but before the opening of the Suez Canal, for example during the Last Interglacial (MIS5e) high-stand (125,000 years BP) when the flooded Isthmus of Suez enabled exchanges between the Mediterranean and the Indo-Pacific fauna. The recognition that some alleged Lessepsian invaders are in fact native species influences our understanding of the invasion process, its rates and environmental correlates.&lt;/p&gt;

scholarly journals Human impacts and their interactions in the Baltic Sea region

2021 ◽  
Author(s):  
Marcus Reckermann ◽  
Anders Omstedt ◽  
Tarmo Soomere ◽  
Juris Aigars ◽  
Naveed Akhtar ◽  
...  
Keyword(s):  
Climate Change ◽  
Baltic Sea ◽  
Human Activities ◽  
Human Impacts ◽  
The Other ◽  
Indigenous Species ◽  
General Description ◽  
The Baltic Sea ◽  
Baltic Sea Region ◽  
The Baltic

Abstract. Coastal environments, in particular heavily populated semi-enclosed marginal seas and coasts like the Baltic Sea region, are stongly affected by human activities. A multitude of human impacts, including climate change, affects the different compartments of the environment, and these effects interact with each other. As part of the Baltic Earth Assessment Reports (BEAR), we present an inventory and discussion of different human-induced factors and processes affecting the environment of the Baltic Sea region, and their interrelations. Some are naturally occurring and modified by human activities (i.e. climate change, coastal processes, hypoxia, acidification, submarine groundwater discharges, marine ecosystems, non-indigenous species, land use and land cover), some are completely human-induced (i.e. agriculture, aquaculture, fisheries, river regulations, offshore wind farms, shipping, chemical contamination, dumped warfare agents, marine litter and microplastics, tourism, coastal management), and they are all interrelated to different degrees. We present a general description and analysis of the state of knowledge on these interrelations. Our main insight is that climate change has an overarching, integrating impact on all of the other factors and can be interpreted as a background effect, which has different implications for the other factors. Impacts on the environment and the human sphere can be roughly allocated to anthropogenic drivers such as food production, energy production, transport, industry and economy. We conclude that a sound management and regulation of human activities must be implemented in order to use and keep the environments and ecosystems of the Baltic Sea region sustainably in a good shape. This must balance the human needs, which exert tremendous pressures on the systems, as humans are the overwhelming driving force for almost all changes we see. The findings from this inventory of available information and analysis of the different factors and their interactions in the Baltic Sea region can largely be transferred to other comparable marginal and coastal seas in the world.

scholarly journals BIOCHEMICAL GENETIC DIFFERENTIATION AMONG WILD POPULATIONS OF MILKFISH (Chanos chanos) IN INDONESIA

2017 ◽  
Vol 4 (1) ◽  
pp. 11
Author(s):  
Ketut Sugama ◽  
Agus Prijono
Keyword(s):  
Population Structure ◽  
Genetic Differentiation ◽  
Coastal Water ◽  
Wild Populations ◽  
Chanos Chanos ◽  
South Sulawesi ◽  
Biochemical Genetic

Four populations of milkfish (Chanos chanos ) were collected (N=100) from coastal water of  Aceh. Bali, East Java and South Sulawesi and were examined electrophoretically at 29 loci to deterurine the genetic vuriability and the population structure.

scholarly journals Genetic Diversity and Natural Selection of Plasmodium vivax Duffy Binding Protein-II From China-Myanmar Border of Yunnan Province, China

2021 ◽  
Vol 12 ◽  
Author(s):  
Tian-Qi Shi ◽  
Hai-Mo Shen ◽  
Shen-Bo Chen ◽  
Kokouvi Kassegne ◽  
Yan-Bing Cui ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Natural Selection ◽  
Genetic Differentiation ◽  
Positive Selection ◽  
Plasmodium Vivax ◽  
Yunnan Province ◽  
Duffy Binding Protein ◽  
Synonymous Mutations ◽  
Selection Of

Malaria incidence has declined dramatically over the past decade and China was certified malaria-free in 2021. However, the presence of malaria in border areas and the importation of cases of malaria parasites are major challenges for the consolidation of the achievements made by China. Plasmodium vivax Duffy binding protein (PvDBP) performs a significant role in erythrocyte invasion, and is considered a promising P. vivax vaccine. However, the highly polymorphic region of PvDBP (PvDBP-II) impedes the development of blood-stage vaccine against P. vivax. In this study, we investigated the genetic diversity and natural selection of PvDBP-II among 124 P. vivax isolates collected from the China-Myanmar border (CMB) in Yunnan Province, China, during 2009–2011. To compare genetic diversity, natural selection, and population structure with CMB isolates, 85 pvdbp-II sequences of eastern Myanmar isolates were obtained from GenBank. In addition, global sequences of pvdbp-II were retrieved from GenBank to establish genetic differentiation relationships and networks with the CMB isolates. In total, 22 single nucleotide polymorphisms reflected in 20 non-synonymous and two synonymous mutations were identified. The overall nucleotide diversity of PvDBP-II from the 124 CMB isolates was 0.0059 with 21 haplotypes identified (Hd = 0.91). The high ratio of non-synonymous to synonymous mutations suggests that PvDBP-II had evolved under positive selection. Population structure analysis of the CMB and eastern Myanmar isolates were optimally grouped into five sub-populations (K = 5). Polymorphisms of PvDBP-II display that CMB isolates were genetically diverse. Mutation, recombination, and positive selection promote polymorphism of PvDBP-II of P. vivax population. Although low-level genetic differentiation in eastern Myanmar was identified along with the more effective malaria control measures, the complexity of population structure in malaria parasites has maintained. In conclusion, findings from this study advance knowledge of the understanding of the dynamic of P. vivax population, which will contribute to guiding the rational design of a PvDBP-II based vaccine.

scholarly journals Population Genetics of the Red Rock Lobster,  Jasus edwardsii

2021 ◽  
Author(s):  
◽  
Luke Thomas
Keyword(s):  
Population Structure ◽  
Gene Flow ◽  
New Zealand ◽  
Genetic Differentiation ◽  
Microsatellite Markers ◽  
Rocky Reef ◽  
Rock Lobster ◽  
Wide Range ◽  
Jasus Edwardsii ◽  
Polymorphic Microsatellite

<p>Understanding patterns of gene flow across a species range is a vital component of an effective fisheries management strategy. The advent of highly polymorphic microsatellite markers has facilitated the detection of fine-scale patterns of genetic differentiation at levels below the resolving power of earlier techniques. This has triggered the wide-spread re-examination of population structure for a number of commercially targeted species. The aims of thesis were to re-investigate patterns of gene flow of the red rock lobster Jasus edwardsii throughout New Zealand and across the Tasman Sea using novel microsatellite markers. Jasus edwardsii is a keystone species of subtidal rocky reef system and supports lucrative export markets in both Australia and New Zealand. Eight highly polymorphic microsatellite markers were developed from 454 sequence data and screened across a Wellington south coast population to obtain basic diversity indices. All loci were polymorphic with the number of alleles per locus ranging from 6-39. Observed and expected heterozygosity ranged from 0.563-0.937 and 0.583-0.961, respectively. There were no significant deviations from Hardy-Weinberg equilibrium following standard Bonferroni corrections. The loci were used in a population analysis of J. edwardsii that spanned 10 degrees of latitude and stretched 3,500 km across the South Pacific. The analysis rejected the null-hypothesis of panmixia based on earlier mDNA analysis and revealed significant population structure (FST=0.011, RST=0.028) at a wide range of scales. Stewart Island was determined to have the highest levels of genetic differentiation of all populations sampled suggesting a high degree of reproductive isolation and self-recruitment. This study also identified high levels of asymmetric gene flow from Australia to New Zealand indicating a historical source-sink relationship between the two countries. Results from the genetic analysis were consistent with results from oceanographic dispersal models and it is likely that the genetic results reflect historical and contemporary patterns of Jasus edwardsii dispersal and recruitment throughout its range.</p>

scholarly journals COMPARISON ON VEGETATION COMPOSITION AND STRUCTURE OF EXCLOSURES VS. OPEN GRAZING LANDS IN NORTHERN ETHIOPIA

2021 ◽  
Vol 9 (8) ◽  
pp. 70-99
Author(s):  
Samson Shimelse Jemaneh
Keyword(s):  
Population Structure ◽  
Species Richness ◽  
Plant Species ◽  
Woody Species ◽  
Soil Parameters ◽  
Northern Ethiopia ◽  
Indigenous Species ◽  
Regeneration Status ◽  
Composition And Structure ◽  
Grazing Lands

This study was conducted with the objectives of study investigates, compare, and try to describe the floristic composition and structure of the vegetation of exclosures and open grazing lands. A stratified preferential sampling design technique with flexible systematic model was used for data collection. Data on vegetation and environmental parameters were gathered from 120 quadrants (90 from restorations or exclosures of different ages and 30 from adjacent open grazing lands), of 20 m x 20 m (400 m2) size. Species richness and the presence or absence of herbaceous plants were recorded like soil samples in a 2 m x 2 m (4 m2) subplot inside each main quadrant from five points, one at each corner and one at the center.  A total of 142 plant species belonging to 118 genera and 52 families were identified. All exclosures displayed higher plant species richness, diversity, and aboveground standing biomass compared to the adjacent open grazing lands. Consideration of edaphic (e.g. soil total nitrogen, available phosphorus, CEC, exchangeable bases, soil pH and soil texture) and site (e.g. Stoniness, Grazing) variables will help to optimize the selection of areas for the establishment of future exclosures. Moreover, our study suggests that with time exclosures may increasingly obtain an important role as refugees and species pool similar to church forests and should be protected and managed in a sustainable manner. However, economic and social impacts of exclosures should be included in feasibility studies before establishing exclosures in the future.  Altitude, Grazing and some soil parameters like Mg were the major environmental factors in the division of the vegetation into plant community types. The result of the frequency distribution of woody species showed a high proportion of small-sized individuals in the lower diameter classes indicating good recruitment potential of the forest patches and the rare occurrence of large individuals. Such trend was probably caused by past disturbance of the original vegetation resulting in a succession of secondary vegetation. In addition, the analysis of species population structure indicated that some tree species had abnormal population structure with no or few individuals at lower size classes. Moreover, assessment of regeneration status on the basis of age classes indicated that significant proportion of woody species were represented by few or no seedlings, entailing that they were under threat. Substantial numbers of forest species were found to have irregular population structure and are in reduced regeneration status. To prevent local extinction of these species, present efforts of nursery establishment and plantation of indigenous species in the exclosures should be strengthened and extended.

scholarly journals Dynamic genetic diversity and population structure of Coreius guichenoti

ZooKeys ◽  
2021 ◽  
Vol 1055 ◽  
pp. 135-148
Author(s):  
Dongqi Liu ◽  
Feng Lan ◽  
Sicai Xie ◽  
Yi Diao ◽  
Yi Zheng ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Mitochondrial Dna ◽  
Population Structure ◽  
Genetic Differentiation ◽  
Yangtze River ◽  
Fish Passage ◽  
The Yangtze River ◽  
Artificial Breeding ◽  
Significant Difference ◽  
High Elevations

To investigate the genetic effects on the population of Coreius guichenoti of dam constructions in the upper reaches of the Yangtze River, we analyzed the genetic diversity and population structure of 12 populations collected in 2009 and 2019 using mitochondrial DNA (mtDNA) control regions. There was no significant difference in genetic diversity between 2009 and 2019 (P &gt; 0.05), but the population structure tended to become stronger. Genetic differentiation (FST) among five populations (LX, BB, YB, SF and JA) collected in 2009 was not significant (P &gt; 0.05). However, some populations collected in 2019 were significantly differentiated (P &lt; 0.05), indicating that the population structure has undergone change. A correlation analysis showed that the genetic diversity of the seven populations collected in 2019 was significantly negatively correlated with geographical height (r = −0.808, P = 0.028), indicating that the populations at high elevations were more vulnerable than those at low elevations. In order to prevent the further decrease of genetic diversity and population resources, some conservation and restoration suggestions, such as fish passage and artificial breeding, are put forward.

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