Anibiotic-resistance patterns and relative concentrations of bacteria (gram-negative rods) from ash deposits of various ages on the Krakatau Islands

The Krakatau islands Rakata, Sertung and Panjang, have been colonized by plants, animals and microorganisms over about a century, since the area was probably sterilized by the eruptions of August 1883. In 1930 the island of Anak Krakatau appeared and has since grown subaerially by periodic volcanic eruptions. Parts of this island may have been sterilized by ash eruptions in 1952 and 1953, and since 1962 lava flows have added new land surfaces to the island, the most recent being in 1980. At the northern end of Sertung Island, a long, narrow, sand spit built of eroded volcanic debris provides a land surface that is only a few decades old. These very new land habitats on Anak Krakatau and the Sertung spit, when examined for antibiotic-resistance patterns (resistotypes) of soil bacteria (Gramnegative rods, GNR), were shown to contain GNR much less antibiotic-resistant than those from the older habitats of Sertung on which over 100 years of post-eruptive colonization and succession has been possible. The concentration of soil microorganisms was also considerably less in these very young land habitats; only where vegetation had become established were soil GNR significantly resistant to antibiotics and soil microbial concentrations similar to those in the older habitats of the archipelago.

Author(s):  
Meesha Singh ◽  
Rupsha Karmakar ◽  
Sayak Ganguli ◽  
Mahashweta Mitra Ghosh

Aims: This study aims at comparative identification of antibiotic resistance patterns in bacteria isolated from samples collected from rural environment (LS) and urban environments (SS). Metagenomic profiling gave us insights into the microbial abundance of the two samples. This study focused on culture-based methods for complete identification of antibiotic resistant isolates and estimation of comparative antibiotic resistance among the two samples. Study Design: Untreated medical waste and anthropogenic waste disposal can lead to the propagation of different antibiotic resistant strains in wastewater environments both in urban and rural set ups which provide an insight towards this study approach mentioned in the methodology segment. Place and Duration of Study: Sewer system of a medical facility located in Purulia, India was the collection site for liquid sludge. Solid sludge and associated wastewater were collected in vicinity of a large urban medical facility from central Kolkata, India. Methodology: Physico-chemical properties were analyzed followed by microbiological and biochemical characterization. The antibiotic resistance patterns were determined by Kirby-Bauer disc diffusion assay. Potent multidrug resistant isolates were identified using 16srRNA gene amplification followed by Phylogenetic profiling, using CLC Genomics workbench. Results: We observed maximum resistance in an E. coli isolate which was resistant up to 22 antibiotics. Combined data for resistance from urban and rural samples were found to exhibit 83.9% resistance to beta lactams, 85.7% to macrolides, 44.2% to fluoroquinolones, 50% to glycopeptides and cephalosporins, 35.7 % to carbapenems and sulfonamides, 28.5 % to tetracycline, and 23.8 % to aminoglycosides. Conclusion: The high prevalence of antibiotic-resistant bacteria harbouring diverse resistance traits across samples indicated towards probable horizontal gene transfer across environmental niches. This study can prove to be useful to understand and map the patterns of resistance and stringently apply the counter measures related to public health practices.


1973 ◽  
Vol 71 (1) ◽  
pp. 209-215 ◽  
Author(s):  
D. M. Wells ◽  
O. B. James

SUMMARYThe antibiotic resistance patterns of coliforms in faecal specimens from pigs and their human contacts were studied. The ability of the resistant coliforms to transfer their resistance in vitro to antibiotic-sensitive recipients was examined. The results showed that pigs which had received antibiotics carried more multiply-resistant, R-factor bearing coliforms than pigs which had not been given antibiotics. Human contacts of the antibiotic-treated pigs had a higher incidence of antibiotic-resistant coliforms with R-factors than human contacts of pigs which had not been given antibiotics. It is concluded that antibiotic treatment of farm, animals may lead to acquisition of antibiotic resistance by gut coliforms of man.


Apart from feral pigs on Panjang, rats ( Rattus rattus and Rattus tiomanicus ) and bats (various families, genera and species) are the only mammals resident on the Krakatau Islands. The two species of rat occur on separate islands, R. rattus on Rakata and R. tiomanicus on Panjang and Sertung. Both occur on Java. Of the two genera of bats examined, species of Cynopterus were found on Java and all the Krakatau islands, whereas Myotis muricola muricola was detected only on Java and Rakata. The main faecal bacteria of these mammals were shown to be Escherichia coli and species of Klebsiella , Enterobacter and Citrobacter , with other bacteria (e.g. Proteus sp., Pseudomonas sp., Aeromonas sp., Serratia sp., Proteus/ Providenca sp., Morganella sp. and Streptococcus faecalis ) being present in only a minority of individuals Significant differences were noted between the faecal floras of the two rat species. E. coli was always present in R. rattus , but was less frequent in R. tiomanicus (p < 0.05), whereas species of Klebsiella and Citrobacter were less frequent in R. rattus than in R. tiomanicus (p < 0.05). Differences between the faecal floras of the two bat genera were less significant, with the four main faecal bacteria being present in each genus. However, some individual M. muricola muricola yielded S. faeclis, Morganella sp. and Proteus/Providencia sp. whereas species of Cynopterus did not ( p < 0.05). S. faecalis was detected in rats and the bat M. muricola muricola on Java, but not in mammals on the Krakataus. This may be related to the absence of humans and their domesticated animals on the Krakatau islands. Only on Java did rats carry tetracycline-resistant E. coli or tetracycline-resistant species of Klebsiella . This may be related to the widespread use of tetracycline by humans on Java, where tetracycline is available without medical supervision. Isolates of E. coli from rats on Panjang were more resistant to chloramphenicol than were E. coli isolated from rats on the other islands of the Krakatau group, and isolates of Klebsiella from bats on Panjang were more resistant to sulphamethoxazole than were Klebsiella species isolated from bats on Rakata. The reason for faecal bacteria from Panjang mammals being more antibiotic resistant than those from mammals on other islands of the group is unclear, but may be related to differences in diet and vegetation, or the presence of feral pigs on Panjang only.


2020 ◽  
Author(s):  
Pablo Catalan ◽  
Carlos Reding ◽  
Jessica Blair ◽  
Ivana Gudelj ◽  
Jon Iredell ◽  
...  

We sought global patterns of antibiotic resistant pathogenic bacteria within the AMR Research Initiative database, Atlas. This consists of 6.5M clinical minimal inhibitory concentrations (MICs) observed in 70 countries in 633k patients between 2004 and 2017. Stratifying MICs according to pathogens (P), antibiotics (A) and countries (C), we found that the frequency of resistance was higher in Atlas than other publicly available databases. We determined global MIC distributions and, after showing they are coherent between years, we predicted MIC changes for 43 pathogens and 827 pathogen-antibiotic (PAs) pairings that exhibit significant resistance dynamics, including MIC increases and even decreases. However, many MIC distributions are multi-modal and some PA pairs exhibit sudden changes in MIC. We therefore analysed Atlas after replacing the clinical classification of pathogens into ‘susceptible’, ‘intermediate’ and ‘resistant’ with an information-optimal, cluster-based classifier to determine subpopulations with differential resistance that we denote S and R. Accordingly, S and R clusters for different PA pairs exhibit signatures of stabilising, directional and disruptive selection because their respective MICs can have different dynamics. Finally, we discuss clinical applications of a (R, dR/dt) ‘phase plane’ whereby the MIC of R is regressed against change in MIC (dR/dt), a methodology we use to detect PA pairs at risk of developing clinical resistance.


2021 ◽  
Vol 50 (Supplement_1) ◽  
Author(s):  
Lauren Lindsey ◽  
Doug Quilty ◽  
Taylor Cromarty ◽  
Ali Assi ◽  
Sander Veldhuyzen van Zanten ◽  
...  

Abstract Background Our community-driven projects address concerns of Canadian Arctic Indigenous communities about Helicobacter pylori (Hp) infection, responsible for elevated gastric cancer mortality in the region. A key concern is poor effectiveness of anti-Hp treatment. We aimed to describe antibiotic resistance patterns in Hp isolated from project participants. Methods Participants in 7 communities underwent upper gastrointestinal endoscopy with 2 gastric biopsies taken for tissue culture during 2008-2017. We tested Hp isolates for resistance to 7 antibiotics by Etest and assessed 4 outcomes: resistance to metronidazole, clarithromycin, 1+ antibiotics, and 2+ antibiotics. We tabulated proportion positive among isolates tested with 95% confidence intervals (CI) and used logistic regression to assess the relation of age and sex to resistance outcomes. Results Of 259 Hp isolates tested, resistance to metronidazole, clarithromycin, 1+ antibiotics, and 2+ antibiotics were (% [CI]): respectively, 35 [29-41], 19 [15-25], 44 [38-50], and 12 [8-17] overall; 38 [30-47], 24 [17-32], 49 [41-58], and 16 [11-23] in 146 isolates from women; and 30 [22-39], 13 [8-21], 36 [27-46], and 6 [3-12] in 113 isolates from men. Odds of resistance to clarithromycin, 1+ antibiotics, 2+ antibiotics, and, to a lesser degree metronidazole, were elevated in women relative to men after age adjustment and increased with age in women but not men. Conclusion In Arctic Indigenous communities in Canada, women were more likely than men to harbor antibiotic-resistant Hp, and their frequency of resistant Hp infection increased with age. Key messages Community-driven research answers questions posed by those who bear the disease burden.


Author(s):  
Fatih Matyar

In this study it was aimed to determine the microbial diversity and level of antibiotic resistance patterns of Gram-negative bacterial isolates from the hospital sewages. The 219 Gram-negative bacterial isolates to 16 different antibiotics (belonging 10 classes), was investigated by agar diffusion method. A total of 18 species of bacteria were isolated: the most common strains isolated from all samples were Klebsiella oxytoca (27.4%), Klebsiella pneumoniae (20.5%) and Escherichia coli (20.1%). There was a high incidence of resistance to ampicillin (98.6%), streptomycin (95.9%) and erythromycin (90.0%), and a low incidence of resistance to cefepim (13.2%), imipenem (5.0%) and meropenem (3.2%). 35.6% of all bacteria isolated from hospital sewage were resistant to 9 different antibiotics. The multiple antibiotic resistances (MAR) index ranged from 0.25 to 0.94. Results show that hospital sewages have a significant proportion of antibiotic resistant Gram-negative bacteria, and these bacteria constitute a potential risk for public health.


The explosive eruption of the Indonesian island of Krakatau (Krakatoa) in 1883 almost certainly led to the total destruction of the fauna, flora and microorganisms of the three remaining islands, Rakata (Rakata Besar), Sertung and Panjang (Rakata Kecil). The Ujung Kulon peninsula of Java, 100 km to the south, was much less affected by the volcanic activity. Soil bacteria (Gram-negative rods, GNR) from Rakata (the post-1883 remnant of Krakatau) and the Ujung Kulon peninsula of Java were examined for their antibiotic-resistance patterns. A total of 27 patterns (‘resistotypes’) was detected, based on resistance to the antibiotics ampicillin, chloramphenicol, sulphamethoxazole, trimethoprim, gentamicin, cephalothin and tetracycline. Nine resistotypes were common to Rakata and Java, eleven exclusive to Rakata, and seven exclusive to Java. Two of the common resistotypes (f and z) were widely distributed but most were limited in their distribution and detected at only one site. On both Java and Rakata different resistotypes were detected at different altitudes. Effective colonization of Rakata by GNR has occurred in the 101 years since its sterilization. Seeding of the upper slopes and summit of Rakata with biotypes from mountain areas in Java appears to have occurred. In addition, apparently independent evolution of GNR has occurred on Rakata. Overall, the GNR detected on the uninhabited and previously sterilized island of Rakata were resistant to as wide a range of antibiotics as were those from nearby Java.


Antibiotics ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 618
Author(s):  
Michaela Sannettha van den Honert ◽  
Pieter Andries Gouws ◽  
Louwrens Christiaan Hoffman

Although limited, studies have found conflicting results on whether co-grazing results in significant antibiotic resistance transfer between species. This type of farming system can act as a vector in the geographical spread of antibiotic-resistant bacteria in the environment. The aim of this study was to determine the antibiotic-resistant patterns between co-grazing and non-co-grazing livestock and wildlife species in South Africa. Escherichia coli was isolated from the faeces of various wildlife and livestock species from two farms in South Africa and was tested for antibiotic resistance using the Kirby–Bauer disk diffusion method against chloramphenicol, nalidixic acid, ampicillin, streptomycin, sulphafurazole, and tetracycline. A selection of some common antibiotic-resistant genes (blaCMY, aadA1, sul1, sul2, tetA, and tetB) were detected using PCR. The E. coli isolates from wildlife and livestock that co-grazed showed no significant differences in antibiotic resistance patterns. However, this was not the case for tetracycline resistance as the livestock isolates were significantly more resistant than the co-grazing wildlife isolates. The E. coli isolates from the non-co-grazing livestock and wildlife had significant differences in their antibiotic susceptibility patterns; the wildlife E. coli isolates were significantly more resistant to sulphafurazole and streptomycin than the livestock isolates, whilst those isolated from the cattle were significantly more resistant to ampicillin than the wildlife and sheep isolates. The results of this study suggest that there could be an exchange of antibiotic-resistant bacteria and genes between livestock and wildlife that co-graze.


Antibiotics ◽  
2020 ◽  
Vol 10 (1) ◽  
pp. 28
Author(s):  
Nunziatina Russo ◽  
Alessandro Stamilla ◽  
Giuseppe Cascone ◽  
Cinzia Lucia Randazzo ◽  
Antonino Messina ◽  
...  

The emergence of multidrug resistance among Enterobacteriaceae in livestock poses a serious public health threat. Escherichia coli, a usual host of intestinal microbiota, is recognized also as etiological agent of numerous infections widespread in both humans and animals. The colibacillosis is one of the most reported zoonoses worldwide, typically treated with antibiotics in the primary stages. This strategy has promoted the onset of antibiotic-resistant serotypes of E. coli, reducing the effectiveness of therapeutic treatments and contributing to antibiotic resistance spread. The current study focused on biodiversity, pathogenicity, and antibiotic resistance profile of 104 E. coli strains isolated from domestic animals in Eastern Sicily. The strains were isolated from sick animals and carcasses of six different animal species and screened for resistance against 16 antibiotic molecules, as recommended by WHO and OIE. The antibiotic resistance patterns highlighted that all strains were multi-resistant, showing resistance to at least three antibiotic classes. The highest incidence of resistance was observed against amoxicillin (100%), tylosin (97%), sulfamethoxazole (98%), and erythromycin (92%), while the lowest for colistin (8%). The pathotype characterization identified two EPEC strains and the study of genetic linkage (PFGE) showed a wide variety of profiles. The current study emphasized the wide range of multidrug resistance and genotyping profiles in E. coli isolated in Easter Sicily.


2019 ◽  
Vol 12 (7) ◽  
pp. 1140-1149 ◽  
Author(s):  
Orooba Meteab Faja ◽  
Ali Abd Sharad ◽  
Khansa Mohammed Younis ◽  
Merriam Ghadhanfar Alwan ◽  
Basima Jasim Mohammed ◽  
...  

Background and Aim: Despite the importance of the global emergence of Vibrio parahaemolyticus infections worldwide, there has been scanty information on its occurrence in Malaysian seawaters and fish. This study aimed to determine the occurrence of V. parahaemolyticus isolates using polymerase chain reaction targeted at toxin operon gene, thermostable direct hemolysin (tdh), and tdh-related hemolysin genes and to determine antibiotic resistance pattern, genes, and plasmid profile of V. parahaemolyticus from Malaysian seawaters and fish. Materials and Methods: Samples were collected from four recreational beaches in Malaysia (Port Klang; Bachok; Port Dickson; and Mersing). Thiosulfate-citrate-bile salts-sucrose (TCBS) agar and chromogenic Vibrio agar were used for isolation and identification. Colonies with yellow color on TCBS and green color on chromogenic vibrio (CV) agar were considered to be V. parahaemolyticus and they were subjected to biochemical tests. All V. parahaemolyticus isolates were further subjected to identification using seven specific gene markers. Results: Seventy-three Vibrio isolates were recovered. Only one gene tdh> from seawater isolates of Vibrio has high virulence gene percentage (95.23%). Two genes alkaline serine protease (asp) and (tdh) had high percentage of virulence (83.87% and 80.64%, respectively) from fish. Comparatively, fish isolates have a higher virulence percentage compared to seawater isolates. Only gene streptomycin resistance B (strB) from seawater had 100% of the resistance genes. All isolates were multi-antibiotic resistant. Seventeen antibiotic resistance patterns were observed. The isolates had plasmids of varying sizes ranging from 2.7 kb to 42.4 kb. Dendrogram based on antibiotic resistance patterns of V. parahaemolyticus isolates discriminated the isolates into three clusters. Conclusion: This study demonstrated the occurrence of pathogenic, multi-antibiotic-resistant V. parahaemolyticus strains in Malaysian coastal waters and fish, and this could constitute potential public health risks.


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