scholarly journals Time is of the essence: impact of delays on effectiveness of contact tracing for COVID-19, a modelling study

Author(s):  
Mirjam E. Kretzschmar ◽  
Ganna Rozhnova ◽  
Martin Bootsma ◽  
Michiel van Boven ◽  
Janneke van de Wijgert ◽  
...  

SummaryBackgroundWith confirmed cases of COVID-19 declining in many countries, lockdown measures are gradually being lifted. However, even if most social distancing measures are continued, other public health measures will be needed to control the epidemic. Contact tracing via conventional methods or mobile app technology is central to control strategies during deescalation of social distancing. We aimed to identify key factors for a contact tracing strategy (CTS) to be successful.MethodsWe evaluated the impact of timeliness and completeness in various steps of a CTS using a stochastic mathematical model with explicit time delays between time of infection and symptom onset, and between symptom onset, diagnosis by testing, and isolation (testing delay). The model also includes tracing of close contacts (e.g. household members) and casual contacts, followed by testing regardless of symptoms and isolation if positive, with different delays (tracing delay) and coverages (tracing coverage). We computed effective reproduction numbers of a CTS (Rcts) for a population with social distancing measures and various scenarios for isolation of index cases and tracing and quarantine of its contacts.FindingsFor the best-case scenario (testing and tracing delays of 0 days and tracing coverage of 80%), and assuming that around 40% of transmission occur before symptom onset, the model predicts that the effective reproduction number of 1.2 (with social distancing only) will be reduced to 0.8 by adding contact tracing. A testing delay of 2 days requires tracing delay to be at most 1 day, or tracing coverage to be at least 80% to keep Rcts below 1. With a testing/isolation delay of 3 days, even the most efficient CTS cannot reach Rcts values below 1. The effect of minimizing tracing delay (e.g., with app-based technology) declines with decreasing coverage of app use, but app-based tracing alone remains more effective than conventional tracing alone even with 20% coverage. The proportion of transmissions per index case that can be prevented depends on testing and tracing delays, and ranges from up to 80% in the best-case scenario (testing and tracing delays of 0 days) to 42% with a 3-day testing delay and 18% with a 5-day testing delay.InterpretationIn our model, minimizing testing delay had the largest impact on reducing onward transmissions. Optimizing testing and tracing coverage and minimizing tracing delays, for instance with app-based technology, further enhanced CTS effectiveness, with a potential to prevent up to 80% of all transmissions. Access to testing should therefore be optimized, and mobile app technology may reduce delays in the CTS process and optimize contact tracing coverage.Research in contextEvidence before this studyWe searched PubMed, bioRxiv, and medRxiv for articles published in English from January 1, 2020, to June 20, 2020, with the following keywords: (“2019-nCoV” OR “novel coronavirus” OR “COVID-19” OR “SARS-CoV-2”) AND “contact tracing” AND “model*”. Population-level modelling studies of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have suggested that isolation and tracing alone might not be sufficient to control outbreaks and additional measures might be required. However, few studies have focused on the effects of lifting individual measures once the first wave of the epidemic has been controlled. Lifting measures must be accompanied by effective contact tracing strategies (CTS) in order to keep the effective reproduction number below 1. A detailed analysis, with special emphasis on the effects of time delays in testing of index patients and tracing of contacts, has not been done.Added value of this studyWe performed a systematic analysis of the various steps required in the process of testing and diagnosing an index case as well as tracing and isolating possible secondary cases of the index case. We then used a stochastic transmission model which makes a distinction between close contacts (e.g. household members) and casual contacts to assess which steps and (possible) delays are crucial in determining the effectiveness of CTS. We evaluated how delays and the level of contact tracing coverage influence the effective reproduction number, and how fast CTS needs to be to keep the reproduction number below 1. We also analyzed what proportion of onward transmission can be prevented for short delays and high contact tracing coverage. Assuming that around 40% of transmission occurs before symptom onset, we found that keeping the time between symptom onset and testing and isolation of an index case short (<3 days) is imperative for a successful CTS. This implies that the process leading from symptom onset to receiving a positive test should be minimized by providing sufficient and easily accessible testing facilities. In addition, reducing contact-tracing delays also helps to keep the reproduction number below 1.Implications of all the available evidenceOur analyses highlight that CTS will only contribute to containment of COVID-19 if it can be organised in a way that time delays in the process from symptom onset to isolation of the index case and his/her contacts are very short. The process of conventional contact tracing should be reviewed and streamlined, while mobile app technology may offer a tool for gaining speed in the process. Reducing delay in testing subjects for SARS-CoV-2 should be a key objective of CTS.

Biology ◽  
2020 ◽  
Vol 9 (5) ◽  
pp. 100 ◽  
Author(s):  
Biao Tang ◽  
Francesca Scarabel ◽  
Nicola Luigi Bragazzi ◽  
Zachary McCarthy ◽  
Michael Glazer ◽  
...  

Since the beginning of the COVID-19 pandemic, most Canadian provinces have gone through four distinct phases of social distancing and enhanced testing. A transmission dynamics model fitted to the cumulative case time series data permits us to estimate the effectiveness of interventions implemented in terms of the contact rate, probability of transmission per contact, proportion of isolated contacts, and detection rate. This allows us to calculate the control reproduction number during different phases (which gradually decreased to less than one). From this, we derive the necessary conditions in terms of enhanced social distancing, personal protection, contact tracing, quarantine/isolation strength at each escalation phase for the disease control to avoid a rebound. From this, we quantify the conditions needed to prevent epidemic rebound during de-escalation by simply reversing the escalation process.


Author(s):  
Diego Chowell ◽  
Kimberlyn Roosa ◽  
Ranu Dhillon ◽  
Gerardo Chowell ◽  
Devabhaktuni Srikrishna

We investigate how individual protective behaviors, different levels of testing, and isolation influence the transmission and control of the COVID-19 pandemic. Based on an SEIR-type model incorporating asymptomatic but infectious individuals (40%), we show that the pandemic may be readily controllable through a combination of testing, treatment if necessary, and self-isolation after testing positive (TTI) of symptomatic individuals together with social protection (e.g., facemask use, handwashing). When the basic reproduction number, R0, is 2.4, 65% effective social protection alone (35% of the unprotected transmission) brings the R below 1. Alternatively, 20% effective social protection brings the reproduction number below 1.0 so long as 75% of the symptomatic population is covered by TTI within 12 hours of symptom onset. Even with 20% effective social protection, TTI of 1 in 4 symptomatic individuals can substantially 'flatten the curve' cutting the peak daily incidence in half.


2020 ◽  
pp. archdischild-2020-319910 ◽  
Author(s):  
Jieun Kim ◽  
Young June Choe ◽  
Jin Lee ◽  
Young Joon Park ◽  
Ok Park ◽  
...  

ObjectiveTransmissibility of COVID-19 by children in the household is not clear. Herein, we describe children’s role in household transmission of COVID-19.Design and settingAll paediatric COVID-19 index cases and their household members reported from 20 January to 6 April 2020 in South Korea were reviewed. The secondary attack rate (SAR) from child index case to household secondary case was calculated. Epidemiological and clinical findings of child index case-household secondary case pair was assessed.ResultsA total of 107 paediatric COVID-19 index cases and 248 of their household members were identified. One pair of paediatric index-secondary household case was identified, giving a household SAR of 0.5% (95% CI 0.0% to 2.6%). The index case was self-quarantined at home after international travel, stayed in her room, but shared a meal table with the secondary case.ConclusionThe SAR from children to household members was low in the setting of social distancing, underscoring the importance of rigorous contact tracing and early isolation in limiting transmission within households.


2020 ◽  
Vol 118 (2) ◽  
pp. e2011548118
Author(s):  
Sang Woo Park ◽  
Kaiyuan Sun ◽  
David Champredon ◽  
Michael Li ◽  
Benjamin M. Bolker ◽  
...  

The reproduction number R and the growth rate r are critical epidemiological quantities. They are linked by generation intervals, the time between infection and onward transmission. Because generation intervals are difficult to observe, epidemiologists often substitute serial intervals, the time between symptom onset in successive links in a transmission chain. Recent studies suggest that such substitution biases estimates of R based on r. Here we explore how these intervals vary over the course of an epidemic, and the implications for R estimation. Forward-looking serial intervals, measuring time forward from symptom onset of an infector, correctly describe the renewal process of symptomatic cases and therefore reliably link R with r. In contrast, backward-looking intervals, which measure time backward, and intrinsic intervals, which neglect population-level dynamics, give incorrect R estimates. Forward-looking intervals are affected both by epidemic dynamics and by censoring, changing in complex ways over the course of an epidemic. We present a heuristic method for addressing biases that arise from neglecting changes in serial intervals. We apply the method to early (21 January to February 8, 2020) serial interval-based estimates of R for the COVID-19 outbreak in China outside Hubei province; using improperly defined serial intervals in this context biases estimates of initial R by up to a factor of 2.6. This study demonstrates the importance of early contact tracing efforts and provides a framework for reassessing generation intervals, serial intervals, and R estimates for COVID-19.


2021 ◽  
Vol 8 ◽  
Author(s):  
Mirjam E. Kretzschmar ◽  
Ganna Rozhnova ◽  
Michiel van Boven

SARS-CoV-2 has established itself in all parts of the world, and many countries have implemented social distancing as a measure to prevent overburdening of health care systems. Here we evaluate whether and under which conditions containment of SARS-CoV-2 is possible by isolation and contact tracing in settings with various levels of social distancing. To this end we use a branching process model in which every person generates novel infections according to a probability distribution that is affected by the incubation period distribution, distribution of the latent period, and infectivity. The model distinguishes between household and non-household contacts. Social distancing may affect the numbers of the two types of contacts differently, for example while work and school contacts are reduced, household contacts may remain unchanged. The model allows for an explicit calculation of the basic and effective reproduction numbers, and of exponential growth rates and doubling times. Our findings indicate that if the proportion of asymptomatic infections in the model is larger than 30%, contact tracing and isolation cannot achieve containment for a basic reproduction number (ℛ0) of 2.5. Achieving containment by social distancing requires a reduction of numbers of non-household contacts by around 90%. If containment is not possible, at least a reduction of epidemic growth rate and an increase in doubling time may be possible. We show for various parameter combinations how growth rates can be reduced and doubling times increased by contact tracing. Depending on the realized level of contact reduction, tracing and isolation of only household contacts, or of household and non-household contacts are necessary to reduce the effective reproduction number to below 1. In a situation with social distancing, contact tracing can act synergistically to tip the scale toward containment. These measures can therefore be a tool for controlling COVID-19 epidemics as part of an exit strategy from lock-down measures or for preventing secondary waves of COVID-19.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Liang Tian ◽  
Xuefei Li ◽  
Fei Qi ◽  
Qian-Yuan Tang ◽  
Viola Tang ◽  
...  

AbstractWithin a short period of time, COVID-19 grew into a world-wide pandemic. Transmission by pre-symptomatic and asymptomatic viral carriers rendered intervention and containment of the disease extremely challenging. Based on reported infection case studies, we construct an epidemiological model that focuses on transmission around the symptom onset. The model is calibrated against incubation period and pairwise transmission statistics during the initial outbreaks of the pandemic outside Wuhan with minimal non-pharmaceutical interventions. Mathematical treatment of the model yields explicit expressions for the size of latent and pre-symptomatic subpopulations during the exponential growth phase, with the local epidemic growth rate as input. We then explore reduction of the basic reproduction number R0 through specific transmission control measures such as contact tracing, testing, social distancing, wearing masks and sheltering in place. When these measures are implemented in combination, their effects on R0 multiply. We also compare our model behaviour to the first wave of the COVID-19 spreading in various affected regions and highlight generic and less generic features of the pandemic development.


2020 ◽  
Vol 25 (17) ◽  
Author(s):  
Tapiwa Ganyani ◽  
Cécile Kremer ◽  
Dongxuan Chen ◽  
Andrea Torneri ◽  
Christel Faes ◽  
...  

Background Estimating key infectious disease parameters from the coronavirus disease (COVID-19) outbreak is essential for modelling studies and guiding intervention strategies. Aim We estimate the generation interval, serial interval, proportion of pre-symptomatic transmission and effective reproduction number of COVID-19. We illustrate that reproduction numbers calculated based on serial interval estimates can be biased. Methods We used outbreak data from clusters in Singapore and Tianjin, China to estimate the generation interval from symptom onset data while acknowledging uncertainty about the incubation period distribution and the underlying transmission network. From those estimates, we obtained the serial interval, proportions of pre-symptomatic transmission and reproduction numbers. Results The mean generation interval was 5.20 days (95% credible interval (CrI): 3.78–6.78) for Singapore and 3.95 days (95% CrI: 3.01–4.91) for Tianjin. The proportion of pre-symptomatic transmission was 48% (95% CrI: 32–67) for Singapore and 62% (95% CrI: 50–76) for Tianjin. Reproduction number estimates based on the generation interval distribution were slightly higher than those based on the serial interval distribution. Sensitivity analyses showed that estimating these quantities from outbreak data requires detailed contact tracing information. Conclusion High estimates of the proportion of pre-symptomatic transmission imply that case finding and contact tracing need to be supplemented by physical distancing measures in order to control the COVID-19 outbreak. Notably, quarantine and other containment measures were already in place at the time of data collection, which may inflate the proportion of infections from pre-symptomatic individuals.


Author(s):  
Dr. Froilan D. Mobo ◽  
Ms. Ana Liza R. Garcia

St. Anthony of Padua Parish is situated in the heart of Barangay, Matain, Subic, Zambales, which is near the White Rock Beach Resort Hotel headed by Rev. Father Arwin Ebueng Ysonza which is under the umbrella of the Diocese of Iba, Zambales headed by the Most Reverend Bishop Bartolome G. Santos, Jr. DD. It comprises of 9 Barangays which has a population of more than 10,000 approximately, as per the Inter-Agency Task Force (IATF) on COVID-19 resolutions mass gatherings are allowed on 50% capacity which is stipulated under the Modified General Community Quarantine (MGCQ) in which there is a safety measurement protocol followed like the implementation of contact tracing form, getting the temperature per parishioner and observance to Social Distancing. However, with the implementation of these quarantine protocols, there is a problem that arises because the churchgoers can finish the accomplishment of contact tracing form in 30 minutes and half of the Mass celebration was already missed. In line with this, the researcher is proposing a system that can ease up the situation by Using an Automated Contact Tracing System Mobile App with QR Code that can finish the transactions in a much faster approach by generating a QR Code and scan it, these transactions can process in a matter of less than minutes. By the Ciustomized of this new system, it will follow the quarantine protocol, which is set by the Local Inter-Agency Task Force (IATF) on Covid-19 of Subic, Zambales like proper social distancing when entering and leaving the church and recording their names, temperature, and location can be diligently implemented properly and a lot of paper works will be saved because it can generate a quick one-time real-time report that can be exported into an excel form and sent through the e-mails using the Mobile App that scans and generates QR Code per Parishioners


2020 ◽  
Author(s):  
Hossein Gorji ◽  
Markus Arnoldini ◽  
David F. Jenny ◽  
Wolf-Dietrich Hardt ◽  
Patrick Jenny

AbstractCovid-19 mitigation commonly involves contact tracing (CT) and social distancing. Due to its high economic toll and its impact on personal freedom, we need to ease social distancing and deploy alternative measures, while preventing further waves of infections. While reliable mass testing (for virus RNA) would require too many resources to be effective, CT, which focuses on isolating symptomatic cases and their contacts, has been implemented in many countries. However, the latter approach has reduced efficiency when high numbers of positive patients are burdening the tracing centers. Moreover, CT misses transmissions by asymptomatic cases. Therefore, its effect in reducing the reproduction number has a theoretical limit.To improve effectiveness of contact tracing, we propose to complement it with a strategy relying on identifying and testing symptom free subgroups with a significantly higher than average virus prevalence. We call this smart testing (ST). By testing everybody in these subgroups, in addition to symptomatic cases, also large fractions of pre- and asymptomatic persons can be identified, which enhances the effectiveness of contact tracing. High prevalence subgroups can be found in different ways, which are discussed in this paper. A particularly efficient way is via preselection using cheap and fast virus antigen tests, as proposed recently. Mathematical modeling quantifies the potential reduction of the reproduction number by such a two-stage ST strategy. In addition to global scenarios, also more realistic local applications of two-stage ST have been investigated, that is, within counties, institutions, schools, companies, etc., where members have internal as well as external contacts. All involved model parameters have been varied within realistic ranges and results are presented with probabilities. Even with the most pessimistic parameter set, these results suggest that the effect of two-stage ST on the reproduction number would clearly outweigh its economic cost. Two-stage ST is technically and logistically feasible. Further, it is locally effective also when only applied within small local subpopulations. Thereby, two-stage ST efficiently complements the portfolio of mitigation strategies, which allow easing social distancing without compromising public health.Single Sentence SummaryIdentification of high prevalence groups within subpopulations to enhance detection rate of Covid-19 infections by virus RNA tests combined with subsequent isolation.


Author(s):  
Mirjam E. Kretzschmar ◽  
Ganna Rozhnova ◽  
Michiel van Boven

AbstractBackgroundNovel coronavirus (SARS-CoV-2) has extended its range of transmission in all parts of the world, with substantial variation in rates of transmission and severity of associated disease. Many countries have implemented social distancing as a measure to control further spread.MethodsWe evaluate whether and under which conditions containment or slowing down COVID-19 epidemics are possible by isolation and contact tracing in settings with various levels of social distancing. We use a stochastic transmission model in which every person generates novel infections according to a probability distribution that is affected by the incubation period distribution (time from infection to symptoms), distribution of the latent period (time from infection to onset of infectiousness), and overall transmissibility. The model distinguishes between close contacts (e.g., within a household) and other contacts in the population. Social distancing affects the number of contacts outside but not within the household.FindingsThe proportion of asymptomatic or unascertained cases has a strong impact on the controllability of the disease. If the proportion of asymptomatic infections is larger than 30%, contact tracing and isolation cannot achieve containment for an R0 of 2.5. Achieving containment by social distancing requires a reduction of numbers of non-household contacts by around 90%. Depending on the realized level of contact reduction, tracing and isolation of only household contacts, or of household and non-household contacts are necessary to reduce the effective reproduction number to below 1. A combination of social distancing with isolation and contact tracing leads to synergistic effects that increase the prospect of containment.InterpretationIsolation and contact tracing can be an effective means to slow down epidemics, but only if the majority of cases are ascertained. In a situation with social distancing, contact tracing can act synergistically and tip the scale towards containment, and can therefore be a tool for controlling COVID-19 epidemics as part of an exit strategy from current lockdown measures.FundingThis research was partly funded by ZonMw project number 91216062.Research in contextEvidence before this studyAs of 8 April 2020, the novel coronavirus (SARS-CoV-2) has spread to more than 170 countries and has caused near 90,000 deaths of COVID-19 worldwide. In the absence of effective medicines and vaccines, the preventive measures are limited to social distancing, isolation of confirmed and suspected cases, and identification and quarantining of their contacts. Evidence suggests that a substantial portion of transmission may occur before the onset of symptoms and before cases can be isolated, and that many cases remain unascertained. This has potentially important implications for the prospect of containment by combinations of these measures.Added value of this studyUsing a stochastic transmission model armed with current best estimates of epidemiological parameters, we evaluated under which conditions containment could be achieved with combinations of social distancing, isolation and contact tracing. We investigated the level of social distancing needed for containment, and how an additional implementation of isolation and contact tracing may likely help to in reducing the effective reproduction number to below 1, the critical threshold. We analyzed what proportion of household and non-household contacts need to be isolated effectively to achieve containment depending on the level of social distancing in the population. We estimated the impact of combinations of these measures on epidemic growth rate and doubling time for the number of infections. We find that under realistic assumptions on the level of social distancing, additional isolation and contact tracing are needed for stopping the epidemic. Whether quarantining only household contacts is sufficient, depends on levels of social distancing and timeliness of tracing and isolation.Implications of all the available evidenceOur analyses based on best understanding of the epidemiology of COVID-19, highlight that if social distancing is not complete, isolation and contact tracing at least of household contacts can help to delay and lower the epidemic peak. High levels of timely contact tracing of household and non-household contacts may be sufficient to control the epidemic.


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