scholarly journals Primacy model and the evolution of the olfactory receptor repertoire

2018 ◽  
Author(s):  
Hamza Giaffar ◽  
Dmitry Rinberg ◽  
Alexei A. Koulakov

For many animals, the neural activity in early olfactory circuits during a single sniff cycle contains sufficient information for fine odor discrimination. Whilst much is known about the transformations of neural representations in early olfactory circuits, exactly how odorant evoked activity in the main olfactory bulb shapes the perception of odors remains largely unknown. In olfaction, odorant identity is generally conserved over a wide range of conditions, including concentration. We present a theory of identity assignment in the olfactory system that accounts for this invariance with respect to stimulus intensity. We suggest that the identities of relatively few high affinity olfactory receptor types determine an odorant's perceived identity. This set of high-affinity receptors is defined as the primary set and the coding model based on their responses is called the primacy theory. In this study, we explore the impact that primacy coding may have on the evolution of the ensemble of olfactory receptors. A primacy coding mechanism predicts the arrangement of different receptor types in a low-dimensional structure that we call a primacy hull. We present several statistical analyses that can detect the presence of this structure, allowing the predictions of the primacy model to be tested experimentally.

2019 ◽  
Author(s):  
Ji Hyun Bak ◽  
Seogjoo J. Jang ◽  
Changbong Hyeon

The circuits of olfactory signaling are reminiscent of complex computational devices. The olfactory receptor code, which represents the responses of receptors elicited by olfactory stimuli, is effectively an input code for the neural computation of odor sensing. Here, analyzing a recent dataset of the odorant-dependent responses of human olfactory receptors (ORs), we show that the space of human olfactory receptor codes is partitioned into a modular structure where groups of receptors are “labeled” for key olfactory features. Our analysis reveals a low-dimensional structure in the space of human odor perception, with the receptor groups as the bases to represent major features in the perceptual odor space. These findings provide a novel evidence that some fundamental olfactory features are already hard-coded at the level of ORs, separately from the higher-level neural circuits.


BMC Biology ◽  
2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Ramón Cierco Jimenez ◽  
Nil Casajuana-Martin ◽  
Adrián García-Recio ◽  
Lidia Alcántara ◽  
Leonardo Pardo ◽  
...  

Abstract Background Olfactory receptors (ORs) constitute a large family of sensory proteins that enable us to recognize a wide range of chemical volatiles in the environment. By contrast to the extensive information about human olfactory thresholds for thousands of odorants, studies of the genetic influence on olfaction are limited to a few examples. To annotate on a broad scale the impact of mutations at the structural level, here we analyzed a compendium of 119,069 natural variants in human ORs collected from the public domain. Results OR mutations were categorized depending on their genomic and protein contexts, as well as their frequency of occurrence in several human populations. Functional interpretation of the natural changes was estimated from the increasing knowledge of the structure and function of the G protein-coupled receptor (GPCR) family, to which ORs belong. Our analysis reveals an extraordinary diversity of natural variations in the olfactory gene repertoire between individuals and populations, with a significant number of changes occurring at the structurally conserved regions. A particular attention is paid to mutations in positions linked to the conserved GPCR activation mechanism that could imply phenotypic variation in the olfactory perception. An interactive web application (hORMdb, Human Olfactory Receptor Mutation Database) was developed for the management and visualization of this mutational dataset. Conclusion We performed topological annotations and population analysis of natural variants of human olfactory receptors and provide an interactive application to explore human OR mutation data. We envisage that the utility of this information will increase as the amount of available pharmacological data for these receptors grow. This effort, together with ongoing research in the study of genetic changes in other sensory receptors could shape an emerging sensegenomics field of knowledge, which should be considered by food and cosmetic consumer product manufacturers for the benefit of the general population.


Genes ◽  
2019 ◽  
Vol 10 (11) ◽  
pp. 910
Author(s):  
Haifeng Jiang ◽  
Kang Du ◽  
Xiaoni Gan ◽  
Liandong Yang ◽  
Shunping He

Olfactory receptor repertoires show highly dynamic evolution associated with ecological adaptations in different species. The Mariana snailfish (Pseudoliparis swirei) living below a depth of 6000 m in the Mariana Trench evolved degraded vision and occupies a specific feeding habitat in a dark, low-food environment. However, whether such adaptations involve adaptive changes in the chemosensory receptor repertoire is not known. Here, we conducted a comparative analysis of the olfactory receptor (OR) and trace amine-associated receptor (TAAR) gene repertoires in nine teleosts with a focus on the evolutionary divergence between the Mariana snailfish and its shallow-sea relative, Tanaka’s snailfish (Liparis tanakae). We found many fewer functional OR genes and a significantly higher fraction of pseudogenes in the Mariana snailfish, but the numbers of functional TAAR genes in the two species were comparable. Phylogenetic analysis showed that the expansion patterns of the gene families were shared by the two species, but that Mariana snailfish underwent massive gene losses in its OR repertoire. Despite an overall decreased size in OR subfamilies and a reduced number of TAAR subfamilies in the Mariana snailfish, expansion of certain subfamilies was observed. Selective pressure analysis indicated greatly relaxed selective strength in ORs but a slightly enhanced selective strength in TAARs of Mariana snailfish. Overall, our study reveals simplified but specific OR and TAAR repertoires in the Mariana snailfish shaped by natural selection with respect to ecological adaptations in the hadal environment. This is the first study on the chemosensation evolution in vertebrates living in the hadal zone, which could provide new insights into evolutionary adaptation to the hadal environment.


2021 ◽  
Author(s):  
Maxime Policarpo ◽  
Katherine E Bemis ◽  
Patrick Laurenti ◽  
Laurent Legendre ◽  
Jean-Christophe Sandoz ◽  
...  

Ray-finned fishes (Actinopterygii) perceive their environment through a range of sensory modalities, including olfaction 1,2. Anatomical diversity of the olfactory organ suggests that olfaction is differentially important among species 1,3,4. To explore this topic, we studied the evolutionary dynamics of the four main gene families (OR, TAAR, ORA/VR1 and OlfC/VR2) 5 coding for olfactory receptors in 185 species of ray-finned fishes. The large variation in the number of functional genes, between 28 in the Ocean Sunfish Mola mola and 1317 in the Reedfish Erpetoichthys calabaricus, is the result of parallel expansions and contractions of the four main gene families. Several ancient and independent simplifications of the olfactory organ are associated with massive gene losses. In contrast, polypteriforms, which have a unique and complex olfactory organ, have almost twice as many olfactory receptor genes as any other ray-finned fish. These observations suggest a functional link between morphology of the olfactory organ and richness of the olfactory receptor repertoire. Further, our results demonstrate that the genomic underpinning of olfaction in ray-finned fishes is heterogeneous and presents a dynamic pattern of evolutionary expansions, simplifications and reacquisitions.


1997 ◽  
Vol 1 (1) ◽  
pp. 55-69 ◽  
Author(s):  
J. Ewen

Abstract. There are at least two needs to be met by the current research efforts on large scale hydrological modelling. The first is for practical conceptual land-surface hydrology schemes for use with existing operational climate and weather forecasting models, to replace the overly simple schemes often used in such models. The second is for models of large scale hydrology which are properly sensitive to changes in physical properties and inputs measured (or predicted) over a wide range of scales, from the point-scale upwards, yet are simple enough in structure to be coupled to climate and weather forecasting models. Such models of large scale hydrology are needed for studying the environmental impact of pollution and changes in climate and land-use, especially the impact On water resources. The UP system (name derived from Upsealed Physically-based) is an attempt to satisfy the second need. It uses a physically-based approach and has a simple structure, yet incorporates sufficient information on sub-grid behaviour to make it a useful tool for the study of environmental impacts over a wide range of scales. The system uses a new approach to large scale modelling, giving physically-based predictions of hourly flows, storages, saturated areas, etc., for regions covering hundreds of thousands of square kilometres. The basic component of the system is the UP element. This has seven water storage compartments (one each for the snowpack, vegetation canopy, surface water, root zone, unsaturated percolation, interflow and groundwater) and allows all the main processes of the terrestrial phase of the hydrological cycle to be represented. A region is modelled as a collection of UP elements, linked by a river routing scheme. Each compartment represents a fixed zone within the area covered by the UP element, and each is related to a physical process such as groundwater flow. Most of the parameterizations for the compartments are in the form of look-up tables, linking the outputs from the compartments to state variables such as the current storage in the compartment. These parameterizations are, in the main, derived from results from physically-based, distributed models applied to the zones (e.g. a groundwater compartment is parameterized using a groundwater model). For large regions modelled using many UP elements, the UP parameters are regionalized using a classification scheme, thus reducing the overall effort spent in parameterization. The development of the UP system is a long-term project involving research into physically-based parameterization of large scale hydrology models, including the effects of sub-grid spatial variations. The first stage involved developing a "blueprint" for the UP element, based on experience with physically-based, distributed river basin modelling and reviews of existing techniques and modelling approaches for large scale and linked atmosphere-hydrology modelling. This paper describes the UP element and the concepts and ideas behind the development of the UP system and, briefly, describes some of the research and development work currently in progress on UP and its parameterization.


2018 ◽  
Author(s):  
VR Karolis ◽  
M Corbetta ◽  
M Thiebaut de Schotten

AbstractFunctional lateralisation is a fundamental principle of the human brain. However, a comprehensive taxonomy of functional lateralisation and its organisation in the brain is missing. We report the first complete map of functional hemispheric asymmetries in the human brain, reveal its low dimensional structure, and its relationship with structural inter-hemispheric connectivity. Our results suggest that the lateralisation of brain functions is distributed along four functional axes: symbolic communication, perception/action, emotion, and decision-making, and that cortical regions showing asymmetries in task-evoked activity have reduced connections with the opposite hemisphere.


2009 ◽  
Vol 8 (1) ◽  
Author(s):  
Chalimah .

eamwork is becoming increasingly important to wide range of operations. It applies to all levels of the company. It is just as important for top executives as it is to middle management, supervisors and shop floor workers. Poor teamwork at any level or between levels can seriously damage organizational effectiveness. The focus of this paper was therefore to examine whether leadership practices consist of team leader behavior, conflict resolution style and openness in communication significantly influenced the team member’s satisfaction in hotel industry. Result indicates that team leader behavior and the conflict resolution style significantly influenced team member satisfaction. It was surprising that openness in communication did not affect significantly to the team members’ satisfaction.


2021 ◽  
Author(s):  
Ekaterina Mosolova ◽  
Dmitry Sosin ◽  
Sergey Mosolov

During the COVID-19 pandemic, healthcare workers (HCWs) have been subject to increased workload while also exposed to many psychosocial stressors. In a systematic review we analyze the impact that the pandemic has had on HCWs mental state and associated risk factors. Most studies reported high levels of depression and anxiety among HCWs worldwide, however, due to a wide range of assessment tools, cut-off scores, and number of frontline participants in the studies, results were difficult to compare. Our study is based on two online surveys of 2195 HCWs from different regions of Russia during spring and autumn epidemic outbreaks revealed the rates of anxiety, stress, depression, emotional exhaustion and depersonalization and perceived stress as 32.3%, 31.1%, 45.5%, 74.2%, 37.7% ,67.8%, respectively. Moreover, 2.4% of HCWs reported suicidal thoughts. The most common risk factors include: female gender, nurse as an occupation, younger age, working for over 6 months, chronic diseases, smoking, high working demands, lack of personal protective equipment, low salary, lack of social support, isolation from families, the fear of relatives getting infected. These results demonstrate the need for urgent supportive programs for HCWs fighting COVID-19 that fall into higher risk factors groups.


Author(s):  
Sergei Soldatenko ◽  
Sergei Soldatenko ◽  
Genrikh Alekseev ◽  
Genrikh Alekseev ◽  
Alexander Danilov ◽  
...  

Every aspect of human operations faces a wide range of risks, some of which can cause serious consequences. By the start of 21st century, mankind has recognized a new class of risks posed by climate change. It is obvious, that the global climate is changing, and will continue to change, in ways that affect the planning and day to day operations of businesses, government agencies and other organizations and institutions. The manifestations of climate change include but not limited to rising sea levels, increasing temperature, flooding, melting polar sea ice, adverse weather events (e.g. heatwaves, drought, and storms) and a rise in related problems (e.g. health and environmental). Assessing and managing climate risks represent one of the most challenging issues of today and for the future. The purpose of the risk modeling system discussed in this paper is to provide a framework and methodology to quantify risks caused by climate change, to facilitate estimates of the impact of climate change on various spheres of human activities and to compare eventual adaptation and risk mitigation strategies. The system integrates both physical climate system and economic models together with knowledge-based subsystem, which can help support proactive risk management. System structure and its main components are considered. Special attention is paid to climate risk assessment, management and hedging in the Arctic coastal areas.


2019 ◽  
Vol 70 (10) ◽  
pp. 3738-3740

The Tonsillectomy in children or adults is an intervention commonly encountered in the ENT (Ear Nose and Throat) and Head and Neck surgeon practice. The current tendency is to perform this type of surgery in major ambulatory surgery centers. Two objectives are thus pursued: first of all, the increase of the patient quality of life through the reintegration into the family as quickly as possible and secondly, the expenses associated with continuous hospitalization are reduced. Any tertiary (multidisciplinary) sleep center must ensure the complete diagnosis and treatment (including surgery) of sleep respiratory disorders. Under these conditions the selection of patients and especially the implementation of the specific protocols in order to control the postoperative complications it becomes essential. The present paper describes our experience of tonsillectomy as treatment for selected patients with chronic rhonchopathy (snoring) and mild to moderate obstructive sleep apnoea. It was presented the impact of antibiotics protocols in reducing the main morbid outcomes following tonsillectomy, in our day surgery center. The obtained results can also be a prerequisite for the integrative approach of the patients with sleep apnoea who were recommended surgical treatment. Considering the wide range of therapeutic modalities used in sleep apnoea, each with its specific advantages and disadvantages, more extensive and multicenter studies are needed. Keywords: post-tonsillectomy morbidity, day surgery center, sleep disorders


Sign in / Sign up

Export Citation Format

Share Document