scholarly journals Identification of the Wheat VQ Protein Family and Expression Analysis of Candidate Genes Associated with Seed Dormancy and Germination

2020 ◽  
Author(s):  
Xinran Cheng ◽  
Chang Gao ◽  
Xue Liu ◽  
Dongmei Xu ◽  
Xu Pan ◽  
...  
Keyword(s):  
Seed Germination ◽  
Candidate Genes ◽  
Common Wheat ◽  
Seed Dormancy ◽  
Expression Analysis ◽  
Evolutionary Divergence ◽  
Wheat Varieties ◽  
Grain Yield And Quality ◽  
Sprouting Resistance ◽  
Seed Dormancy And Germination

Abstract Background: Seed dormancy and germination determine wheat pre-harvest sprouting resistance and thereby affect grain yield and quality. Arabidopsis VQ genes have been shown to influence seed germination; however, the functions of wheat VQ genes have not been characterized. Results: In this study, we identified 65 TaVQ genes in common wheat and named them TaVQ1–65. We identified 48 paralogous pairs, 37 of which had Ka/Ks values lager than 1, suggesting that most TaVQ genes have suffer positive selection. Chromosome location, gene structure, promoter element and gene ontology annotation showed that the structure of the genes determined their function and that structural change reflected functional diversity. The transcriptome expression analysis of 62 TaVQ genes and microarray analysis of 11 TaVQ genes indicated that they played important roles in diverse biological processes. We compared TaVQ gene expression and corresponding seed germination index values among wheat varieties with contrasting seed dormancy and germination phenotypes and found that 21 TaVQ genes may be related to seed dormancy and germination. Conclusions: Sixty-five TaVQ proteins were identified for the first time in common wheat, and bioinformatics analysis was performed to investigate their phylogenetic relationships and evolutionary divergence. The qRT-PCR data showed that 21 TaVQ candidate genes were potentially involved in seed dormancy and germination. These findings provide effective information for further cloning and functional analysis of TaVQ genes, as well as useful candidate genes for improvement of PHS resistance in wheat.

scholarly journals Regulation of Seed Dormancy and Germination Mechanisms in a Changing Environment

2021 ◽  
Vol 22 (3) ◽  
pp. 1357
Author(s):  
Ewelina A. Klupczyńska ◽  
Tomasz A. Pawłowski
Keyword(s):  
Climate Change ◽  
Seed Germination ◽  
Seed Dormancy ◽  
Environmental Conditions ◽  
Global Climate ◽  
Plant Evolution ◽  
Suitable Habitat ◽  
Climate Change Scenarios ◽  
Adaptation Mechanism ◽  
Seed Dormancy And Germination

Environmental conditions are the basis of plant reproduction and are the critical factors controlling seed dormancy and germination. Global climate change is currently affecting environmental conditions and changing the reproduction of plants from seeds. Disturbances in germination will cause disturbances in the diversity of plant communities. Models developed for climate change scenarios show that some species will face a significant decrease in suitable habitat area. Dormancy is an adaptive mechanism that affects the probability of survival of a species. The ability of seeds of many plant species to survive until dormancy recedes and meet the requirements for germination is an adaptive strategy that can act as a buffer against the negative effects of environmental heterogeneity. The influence of temperature and humidity on seed dormancy status underlines the need to understand how changing environmental conditions will affect seed germination patterns. Knowledge of these processes is important for understanding plant evolution and adaptation to changes in the habitat. The network of genes controlling seed dormancy under the influence of environmental conditions is not fully characterized. Integrating research techniques from different disciplines of biology could aid understanding of the mechanisms of the processes controlling seed germination. Transcriptomics, proteomics, epigenetics, and other fields provide researchers with new opportunities to understand the many processes of plant life. This paper focuses on presenting the adaptation mechanism of seed dormancy and germination to the various environments, with emphasis on their prospective roles in adaptation to the changing climate.

scholarly journals Transcriptomic profiling of wheat near-isogenic lines reveals candidate genes on chromosome 3A for pre-harvest sprouting resistance

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Xingyi Wang ◽  
Hui Liu ◽  
Kadambot H. M. Siddique ◽  
Guijun Yan
Keyword(s):  
Candidate Genes ◽  
Quantitative Trait ◽  
Genomic Region ◽  
Nucleotide Polymorphisms ◽  
Near Isogenic Lines ◽  
Gene Effects ◽  
Isogenic Lines ◽  
Trait Locus ◽  
Grain Yield And Quality ◽  
Sprouting Resistance

Abstract Background Pre-harvest sprouting (PHS) in wheat can cause severe damage to both grain yield and quality. Resistance to PHS is a quantitative trait controlled by many genes located across all 21 wheat chromosomes. The study targeted a large-effect quantitative trait locus (QTL) QPhs.ccsu-3A.1 for PHS resistance using several sets previously developed near-isogenic lines (NILs). Two pairs of NILs with highly significant phenotypic differences between the isolines were examined by RNA sequencing for their transcriptomic profiles on developing seeds at 15, 25 and 35 days after pollination (DAP) to identify candidate genes underlying the QTL and elucidate gene effects on PHS resistance. At each DAP, differentially expressed genes (DEGs) between the isolines were investigated. Results Gene ontology and KEGG pathway enrichment analyses of key DEGs suggested that six candidate genes underlie QPhs.ccsu-3A.1 responsible for PHS resistance in wheat. Candidate gene expression was further validated by quantitative RT-PCR. Within the targeted QTL interval, 16 genetic variants including five single nucleotide polymorphisms (SNPs) and 11 indels showed consistent polymorphism between resistant and susceptible isolines. Conclusions The targeted QTL is confirmed to harbor core genes related to hormone signaling pathways that can be exploited as a key genomic region for marker-assisted selection. The candidate genes and SNP/indel markers detected in this study are valuable resources for understanding the mechanism of PHS resistance and for marker-assisted breeding of the trait in wheat.

scholarly journals Seed dormancy and germination in Cardiocrinum giganteum var. yunnanense, a perennial herb in China with post-dispersal embryo growth

2020 ◽  
Vol 48 (2) ◽  
pp. 303-314
Author(s):  
Ye-Fang Li ◽  
Jie Song ◽  
Wen-Ling Guan ◽  
Feng-Rong Li
Keyword(s):  
Seed Germination ◽  
Seed Dormancy ◽  
Practical Knowledge ◽  
Perennial Herb ◽  
Late Winter ◽  
Dormancy Breaking ◽  
Morphophysiological Dormancy ◽  
Summer Temperatures ◽  
Autumn And Winter ◽  
Seed Dormancy And Germination

Seeds of Cardiocrinum giganteum var. yunnanense, which is native to China, has underdeveloped embryos when dispersed from parent plants that did not grow until the second autumn and winter after exposure to summer temperatures. Radicles and cotyledons emerged in late winter and spring. Thus, a 15–16 month period was required from dispersal to seed germination. Under laboratory conditions, this period could be shortened to 5–6 months in a 25°C/15°C (60 days) → 15°C/5°C (60 days) → 5°C (60 days) temperature sequence. Based on dormancy-breaking requirements, the seeds have deep simple morphophysiological dormancy (MPD). This is practical knowledge for propagation of the species from seeds.

scholarly journals Transcriptional Differences of Peanut (Arachis hypogaea L.) Seeds in the Fresh-harvest, After-ripened and Just-germinated States: insights into regulatory networks of seed dormancy-release and germination

2019 ◽  
Author(s):  
Pingli Xu ◽  
Guiying Tang ◽  
Weipei Cui ◽  
Guangxia Chen ◽  
Chang-Le Ma ◽  
...  
Keyword(s):  
Signal Transduction ◽  
Seed Germination ◽  
Seed Dormancy ◽  
Developmental Stages ◽  
Tricarboxylic Acid Cycle ◽  
Glyoxylate Cycle ◽  
Regulation Mechanism ◽  
Xyloglucan Endotransglycosylase ◽  
Differential Distribution ◽  
Seed Dormancy And Germination

AbstractSeed dormancy and germination are the two important traits related to plant survival and reproduction, and crop yield. To understand their regulation mechanism, it is crucial to clarify which genes or which pathways participate in the regulation of these processes. However, little information is available during the procedure of seed dormancy and germination in peanut. In this study, the seeds of the variety Luhua No.14 with non-deep dormancy were selected and its transcriptional changes at three developmental stages: the fresh-harvest (FS), the after-ripened (DS) and the just-germinated seeds (GS), were investigated by comparative transcriptomics analysis. The results showed that genes with increased transcription in DS vs FS comparison were overrepresented for oxidative phosphorylation, glycolysis pathway and tricarboxylic acid cycle (TCA), suggesting that after a period of drying storage, the intermediates stored in dry seeds were rapidly mobilized by glycolysis, TCA cycle, glyoxylate cycle, etc.; the electron transport chain accompanying with respiration has been reactivated to provide ATP for mobilization of other reserves and seed germination. In GS vs DS pairwise, dozens of the up-regulated genes were related to plant hormone biosynthesis and signal transduction, including the majority of components in auxin signal pathway, and brassinosteroid biosynthesis and signal transduction, and some GA and ABA signal transduction genes. During seeds germination, the expression of some EXPANSIN and XYLOGLUCAN ENDOTRANSGLYCOSYLASE was also significantly enhanced. To investigate the effect of different hormone during the procedure of seed germination, the contents and the differential distribution of ABA, GA, BR and IAA in cotyledon, hypocotyl and radicle, and plumule of three seed sections at different developmental stages were also detected. Combining with previous data in other species, a model of regulatory network related to peanut seed germination was developed. This model will helpful to gain further understanding of the mechanisms controlling seed dormancy and germination.

scholarly journals Identification and Bioinformatic Analysis of the GmDOG1-Like Family in Soybean and Investigation of Their Expression in Response to Gibberellic Acid and Abscisic Acid

Plants ◽  
2020 ◽  
Vol 9 (8) ◽  
pp. 937
Author(s):  
Yingzeng Yang ◽  
Chuan Zheng ◽  
Umashankar Chandrasekaran ◽  
Liang Yu ◽  
Chunyan Liu ◽  
...  
Keyword(s):  
Abscisic Acid ◽  
Seed Germination ◽  
Gibberellic Acid ◽  
Seed Dormancy ◽  
Expression Patterns ◽  
Evolutionary Relationship ◽  
Soybean Seed ◽  
Bioinformatic Analysis ◽  
Chromosomal Distribution ◽  
Seed Dormancy And Germination

Seed germination is one of the most important stages during plant life cycle, and DOG1 (Delay of germination1) plays a pivotal regulatory role in seed dormancy and germination. In this study, we have identified the DOG1-Like (DOG1L) family in soybean (Glycine max), a staple oil crop worldwide, and investigated their chromosomal distribution, structure and expression patterns. The results showed that the GmDOG1L family is composed of 40 members, which can be divided into six subgroups, according to their evolutionary relationship with other known DOG1-Like genes. These GmDOG1Ls are distributed on 18 of 20 chromosomes in the soybean genome and the number of exons for all the 40 GmDOG1Ls varied greatly. Members of the different subgroups possess a similar motif structure composition. qRT-PCR assay showed that the expression patterns of different GmDOG1Ls were significantly altered in various tissues, and some GmDOG1Ls expressed primarily in soybean seeds. Gibberellic acid (GA) remarkably inhibited the expression of most of GmDOG1Ls, whereas Abscisic acid (ABA) inhibited some of the GmDOG1Ls expression while promoting others. It is speculated that some GmDOG1Ls regulate seed dormancy and germination by directly or indirectly relating to ABA and GA pathways, with complex interaction networks. This study provides an important theoretical basis for further investigation about the regulatory roles of GmDOG1L family on soybean seed germination.

Identification of the wheat C3H gene family and expression analysis of candidates associated with seed dormancy and germination

2020 ◽  
Vol 156 ◽  
pp. 524-537
Author(s):  
Xinran Cheng ◽  
Jiajia Cao ◽  
Chang Gao ◽  
Wei Gao ◽  
Shengnan Yan ◽  
...  
Keyword(s):  
Gene Family ◽  
Seed Dormancy ◽  
Expression Analysis ◽  
Seed Dormancy And Germination

Regulation of seed dormancy and germination by nitrate

2018 ◽  
Vol 28 (3) ◽  
pp. 150-157 ◽  
Author(s):  
Lisza Duermeyer ◽  
Ehsan Khodapanahi ◽  
Dawei Yan ◽  
Anne Krapp ◽  
Steven J. Rothstein ◽  
...  
Keyword(s):  
Seed Germination ◽  
Seed Dormancy ◽  
Wild Type ◽  
Gene Encoding ◽  
Environmental Signals ◽  
Primary Dormancy ◽  
Low Concentrations ◽  
Catabolic Enzyme ◽  
Seed Dormancy And Germination ◽  
Nitrate Signalling

AbstractNitrate promotes seed germination at low concentrations in many plant species, and functions as both a nutrient and a signal. As a nutrient, it is assimilated via nitrite to ammonium, which is then incorporated into amino acids. Nitrate reductase (NR) catalyses the reduction of nitrate to nitrite, the committed step in the assimilation. Seed sensitivity to nitrate is affected by other environmental factors, such as light and after-ripening, and by genotypes. Mode of nitrate action in seed germination has been well documented in Arabidopsis thaliana and the hedge mustard Sisymbrium officinale. In these species nitrate promotes seed germination independent of its assimilation by NR, suggesting that it acts as a signal to stimulate germination. In Arabidopsis, maternally applied nitrate affects the degree of primary dormancy in both wild-type and mutants defective in NR. This indicates that nitrate acts not only during germination, but also during seed development to negatively regulate primary dormancy. Functional genomics studies in Arabidopsis have revealed that nitrate elicits downstream events similar to other germination stimulators, such as after-ripening, light and stratification, suggesting that these distinct environmental signals share the same target(s). In Arabidopsis, the NIN-like protein 8 (NLP8) transcription factor, which acts downstream of nitrate signalling, induces nitrate-dependent gene expression. In particular, a gene encoding the abscisic acid (ABA) catabolic enzyme CYP707A2 is directly regulated by NLP8. This regulation triggers a nitrate-induced ABA decrease that permits seed germination. This review article summarizes an update of our current understanding of the regulation of seed dormancy and germination by nitrate.

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