scholarly journals Molecular-structural homology of proteolytic enzymеs in the studying of proteolysis mechanism and its regulation

Author(s):  
A. A. Chirkin ◽  
O. M. Balaeva-Tikhomirova ◽  
V. V. Dolmatova ◽  
I. O. Semenov

The actual problem of experimental medicine is the substantiation of new model organisms that meet modern requirements of bioethics, cost and conditions of detention. The aim of this work was a comparative analysis of the homology degree of proteolytic enzymes in humans and pulmonary freshwater mollusks. The homology of enzymes in nucleotide sequences in humans and pulmonary freshwater mollusks in the analysis of unregulated proteolysis is 66–68 %; regulated proteolysis – 69–76 %; ubiquitin-like modifiers – 78–83 %; extracellular enzymes – 67–76 %; and intracellular enzymes – 65–72 %. The evolutionary conservatism of proteolytic enzymes and the presence of an open blood circulation, which allows the substances under study to be delivered from the hemolymph directly to target cells, make it possible to use these animals as cheap and convenient test organisms. The practical importance of a sufficiently high homology degree of proteolytic enzymes in humans and pulmonary freshwater mollusks justifies the expediency of forming mollusk aquaculture to obtain proteolytic enzyme protein preparations from their tissues within the framework of the tasks of biopharmaceuticals, cosmetics and the food industry.

Nuncius ◽  
2011 ◽  
Vol 26 (1) ◽  
pp. 109-131
Author(s):  
Irina Podgorny

AbstractBy considering the work of American embalmer, lawyer, and physician Carl Lewis Barnes (1872-1927), this paper analyzes the emergence of modern embalming in America. Barnes experimented with and exhibited the techniques by which embalming fluids travelled into the most remote cavities of the human body. In this sense, modern embalmers based their skills and methods on experimental medicine, turning the anatomy of blood vessels, physiology of circulation, and composition of blood into a circuit that allowed embalming fluids to move throughout the corpse. Embalmers in the late 19th century took ownership of the laws of hydrodynamics and the physiology of blood circulation to market their fluids and equipment, thus playing the role of physiologists of death, performing and demonstrating physiological experiments with dead bodies.


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 555-555
Author(s):  
Chihwa Kim ◽  
Wu Wan ◽  
Rui Liu ◽  
Magdalena Kucia ◽  
Janina Ratajczak ◽  
...  

Abstract Abstract 555 We previously reported that complement cascade (CC) is activated in bone marrow (BM) during mobilization of hematopoietic stem/progenitor cells (HSPCs; Blood 2003;101:3784; Blood 2004;103:2071; and Blood 2005;105:40) and that C5 cleavage fragments direct egress of HSPCs from BM into peripheral blood (PB) (Leukemia 2009;23:2052 and Leukemia 2010;24:976). Accordingly, C5 cleavage fragments (C5a and desArgC5a) stimulate myeloid cells in BM to secrete proteolytic enzymes and chemoattract granulocytes into peripheral blood (PB). Therefore, granulocytes form a first wave of cells that permeabilize the BM-PB endothelial barrier and prime it for subsequent egress of HSPCs. We have also observed that activation of the distal part of the complement cascade (CC), which leads to formation of C5b-C9 (also known as the membrane attack complex [MAC]), is crucial for egress/mobilization of HSPCs. It is known that proteins that form MAC can be inserted into cell membranes, resulting in cell lysis, or may remain in biological fluids as soluble MAC (sMAC) and in this “non-lytic” form may interact with target cells. We have already reported that sMAC releases bioactive lipid - sphingosine-1 phosphate (S1P) from erythrocytes, which is a major chemoattractant in mobilized peripheral blood (mPB) for HSPCs (Leukemia 2010;24:976). Since the level of sMAC increases in PB during mobilization as well as following conditioning for transplantation, we became interested in whether this protein complex affects the biology of normal HSPCs. First, we observed that, while sMAC does not affect proliferation and viability of clonogenic progenitors, it activates phosphorylation of MAPKp42/44 and AKT in both human CD34+ and murine SKL cells. Furthermore, sMAC primes and enhances chemotactic responsiveness of HSPCs to S1P and SDF-1 gradients and increases adhesiveness of these cells to BM stroma and endothelium. This effect is probably lipid raft mediated, because exposure of cells to methylo-b-cyclodextrin before chemotaxis abrogates this phenomenon. We also found that HSPCs, as well as PB mononuclear cells exposed to sMAC, secrete increased levels of PGE2 and metalloproteinases, which indicates that an increase in sMAC level in PB after conditioning for transplantation may enhance the homing properties of HSPCs. Thus, our results in toto provide novel evidence that sMAC is an underappreciated and potent regulator of HSPC trafficking and plays an important role, both direct and indirect (via released from cells S1P), in mobilization and homing of HSPCs after transplantation. In support of this notion, we found that mice displaying defects in CC activation and sMAC generation display a defect in homing of HSPCs. Thus, our data provide yet more evidence that innate immunity and the complement cascade regulate trafficking of HSPCs by (1) releasing active C3 and C5 cleavage fragments that increase the level of bioactive lipids chemoattractants in PB and BM and by (2) modulating the migratory properties of HSPCs with sMAC. We propose modulation of CC as a novel strategy for controlling both mobilization and homing of HSPCs. Disclosures: No relevant conflicts of interest to declare.


ZooKeys ◽  
2018 ◽  
Vol 801 ◽  
pp. 127-162 ◽  
Author(s):  
Cornelis A.M. van Gestel ◽  
Susana Loureiro ◽  
Promoz Zidar

Isopods play an important role in the decomposition of leaf litter and therefore are making a significant contribution to nutrient cycling and soil ecosystem services. As a consequence, isopods are relevant models in soil ecotoxicology, both in laboratory toxicity tests and in field monitoring and bioindication studies. This paper aims at reviewing the use of isopods as test organisms in soil ecotoxicology. It provides an overview of the use of isopods in laboratory toxicity tests, with special focus on comparing different exposure methods, test durations, and ecotoxicological endpoints. A brief overview of toxicity data suggests that chemicals are more toxic to isopods when exposed through soil compared to food. The potential of isopods to be used in bioindication and biomonitoring is discussed. Based on the overview of toxicity data and test methods, recommendations are given for the use of isopods in standardized laboratory toxicity tests as well as in situ monitoring studies.


1991 ◽  
Vol 48 (3) ◽  
pp. 421-425 ◽  
Author(s):  
I. Bandin ◽  
Y. Santos ◽  
D. W. Bruno ◽  
R. S. Raynard ◽  
A. E. Toranzo ◽  
...  

Evaluation in vivo and in vitro of the extracellular products (ECP) of a group of Renibacterium salmoninarum strains from different geographic origins revealed a low production of extracellular proteins in all strains and confirmed that most of the isolates were poor producers of proteolytic enzymes. The ECP displayed neither haemolytic activity nor capacity to alter the osmotic equilibrium of fish erythrocytes. In addition, none of the ECP samples displayed cytotoxic activities regardless of the origin of the cell line employed and did not contain substances lethal for fish, since no mortalities were recorded when doses ranging from 10 to 20 μg protein/g fish were administered. Although the present work failed to demonstrate toxicity in vivo of the ECP, it is possible that some extracellular enzymes contribute to the weakening of fish during the disease process and allow bacterial survival.


2015 ◽  
Vol 83 (10) ◽  
pp. 3960-3971 ◽  
Author(s):  
Bernard B. Lanter ◽  
David G. Davies

In the present study, human atherosclerotic carotid arteries were examined following endarterectomy for the presence of the Gram-positive bacteriumPropionibacterium acnesand its potential association with biofilm structures within the arterial wall. TheP. acnes16S rRNA gene was detectable in 4 of 15 carotid artery samples, and viableP. acneswas one among 10 different bacterial species recoverable in culture. Fluorescencein situhybridization analysis of 5 additional atherosclerotic carotid arteries demonstrated biofilm bacteria within all samples, withP. acnesdetectable in 4 samples. We also demonstrated that laboratory-grown cultures ofP. acnesbiofilms were susceptible to induction of a biofilm dispersion response when challenged with physiologically relevant levels of norepinephrine in the presence of iron-bound transferrin or with free iron. The production and release of lipolytic and proteolytic extracellular enzymes byP. acneswere shown to increase in iron-induced dispersed biofilms, and these dispersion-inducedP. acnesVP1 biofilms showed increased expression of mRNAs for the triacylglycerol lipases PPA2105 and PPA1796 and the hyaluronate lyase PPA380 compared to that in untreated biofilms. These results demonstrate thatP. acnescan infect the carotid arteries of humans with atherosclerosis as a component of multispecies biofilms and that dispersion is inducible for this organism, at leastin vitro, with physiologically relevant levels of norepinephrine resulting in the production and release of degradative enzymes.


2020 ◽  
Author(s):  
◽  
Maksims Feofilovs

The statistics of natural disasters, growing population and increasing urbanization rate is indicate a potential increase of disaster risk in urban areas. Research aiming to provide support to disaster risk reduction policies currently is of high importance. The question how to measure urban resilience to natural hazard is an actual problem in research and urban policy planning. A consistent support for assessing urban resilience and evaluating alternative policy strategies for strengthening resilience in required. The current methods applied for assessment of urban resilience are failing to capture the set of important aspects in one measurement. Multidimensionality, short-term and long-term perspective and different likelihoods of disaster occurrence are not captured yet in one single tool. Thus, the Doctoral Thesis aims at creating a novel tool for urban resilience to natural hazard assessment. Three methods ‒ composite indicator, probabilistic simulation, and system dynamics ‒ are applied in a local case study for resilience assessment. Case studies allow understanding the limitations and strengths of the methods. As a result, these methods are integrated into a single tool to overcome limitations of each method. The Doctoral Thesis has been written in English. It consists of an Introduction; 3 Main Chapters; Discussion, Conclusion and Recommendations; 53 figures; 8 tables and 7 publications in appendices; the total number of pages is 180. The Bibliography contains 160 titles. The introduction presents the aim of the Doctoral Thesis, the scientific and practical importance of the developed tool together with the scientific articles published on the topic of the Thesis. The approbated results are presented as a list of publications and presentation made at international scientific conferences. In addition, other publications of the author that are not in line with the Thesis are mentioned. The Doctoral Thesis is based on thematically unified seven scientific articles dedicated to case studies and development of the tool. With help of publications the developed knowledge within this Thesis is transferred to broader scientific community. The publications are published in international scientific journals and are indexed in international scientific databases. The Thesis itself consists of three main chapters. Chapter 1 of the Doctoral Thesis is a literature review on the current topicality of the research field, the terminological variety and epistemological disjunctions of the studied term “resilience” and methods used to measure resilience. Chapter 2 describes each step of methodology of the Doctoral Thesis, presenting the main steps performed in each of the separate studies made within thematic publications. Chapter 3 presents the achieved result. The focus of the chapter is the construct and application of the developed assessment tool of dynamic urban resilience to natural hazards. Finally, conclusions are given at the end of the Thesis resulting from the development and testing of the tool.


Molecules ◽  
2020 ◽  
Vol 25 (2) ◽  
pp. 400 ◽  
Author(s):  
Lucie Linhartová ◽  
Klára Michalíková ◽  
Kamila Šrédlová ◽  
Tomáš Cajthaml

Chlorhexidine (CHX) and octenidine (OCT), antimicrobial compounds used in oral care products (toothpastes and mouthwashes), were recently revealed to interfere with human sex hormone receptor pathways. Experiments employing model organisms—white-rot fungi Irpex lacteus and Pleurotus ostreatus—were carried out in order to investigate the biodegradability of these endocrine-disrupting compounds and the capability of the fungi and their extracellular enzyme apparatuses to biodegrade CHX and OCT. Up to 70% ± 6% of CHX was eliminated in comparison with a heat-killed control after 21 days of in vivo incubation. An additional in vitro experiment confirmed manganese-dependent peroxidase and laccase are partially responsible for the removal of CHX. Up to 48% ± 7% of OCT was removed in the same in vivo experiment, but the strong sorption of OCT on fungal biomass prevented a clear evaluation of the involvement of the fungi or extracellular enzymes. On the other hand, metabolites indicating the enzymatic transformation of both CHX and OCT were detected and their chemical structures were proposed by means of liquid chromatography–mass spectrometry. Complete biodegradation by the ligninolytic fungi was not achieved for any of the studied analytes, which emphasizes their recalcitrant character with low possibility to be removed from the environment.


Viruses ◽  
2020 ◽  
Vol 12 (4) ◽  
pp. 460
Author(s):  
Olja Mijanović ◽  
Ana Branković ◽  
Anton V. Borovjagin ◽  
Denis V. Butnaru ◽  
Evgeny A. Bezrukov ◽  
...  

Neurodegenerative diseases (NDDs) are most commonly found in adults and remain essentially incurable. Gene therapy using AAV vectors is a rapidly-growing field of experimental medicine that holds promise for the treatment of NDDs. To date, effective delivery of a therapeutic gene into target cells via AAV has been a major obstacle in the field. Ideally, transgenes should be delivered into the target cells specifically and efficiently, while promiscuous or off-target gene delivery should be minimized to avoid toxicity. In the pursuit of an ideal vehicle for NDD gene therapy, a broad variety of vector systems have been explored. Here we specifically outline the advantages of adeno-associated virus (AAV)-based vector systems for NDD therapy application. In contrast to many reviews on NDDs that can be found in the literature, this review is rather focused on AAV vector selection and their testing in experimental and preclinical NDD models. Preclinical and in vitro data reveal the strong potential of AAV for NDD-related diagnostics and therapeutic strategies.


1995 ◽  
Vol 182 (3) ◽  
pp. 875-884 ◽  
Author(s):  
A Moretta ◽  
S Sivori ◽  
M Vitale ◽  
D Pende ◽  
L Morelli ◽  
...  

The natural killer (NK) cell-specific p58 molecules EB6 and GL183 have been shown to represent the putative surface receptors for two distinct groups of human histocompatibility leukocyte antigen (HLA) C alleles. Interaction between p58 receptors and class I molecules expressed on target cells results in inhibition of the NK-mediated cytolytic activity and thus in target cell protection. In the present study, we show that EB6 molecules may also act as receptors mediating NK cell triggering. Activatory EB6 molecules were found to be confined only to certain donors. Moreover, in these donors, only a fraction of EB6+ NK clones expressed the activatory form of EB6 molecules, while the remaining clones expressed the conventional inhibitory form. Biochemical analysis of the activatory EB6 molecules revealed a molecular mass of approximately 50 kD (p50), thus differing from the 58-kD inhibitory form. This difference was not due to differential glycosylation of the same protein, as revealed by deglycosylation experiments of isolated EB6 molecules. Treatment of purified p58 or p50/EB6 molecules with proteolytic enzymes, including V8-protease, chymotrypsin, and papain, showed only minor differences in the resulting peptides. Treatment with pepsin followed by two-dimensional peptide mapping demonstrated that, although the majority of peptides migrated in identical positions, differences between the two forms could be detected for at least one major peptide. Anti-EB6 monoclonal antibody (mAb)-mediated cross-linking of p50 molecules was required to trigger the cytolytic activity and the intracellular calcium ([Ca+2]i) increases in appropriate NK clones. Likewise, mAb-mediated cross linking of the p58 EB6 molecules was needed to inhibit the cytolytic activity; however, in this case, no [Ca+2]i increases could be detected. In NK clones expressing the inhibitory p58 EB6 receptors, soluble anti-EB6 mAb prevented recognition of protective Cw4 molecules and reconstituted target cell lysis. In contrast, in clones expressing the activatory p50/EB6 receptor, EB6 masking frequently resulted in partial inhibition of the cytolytic activity against Cw4+ target cells. Therefore, it appears that NK clones expressing the p50/EB6 receptors are induced to lyse Cw4+ target cells upon specific interaction with Cw4 molecules. This concept was further substantiated by experiments in which target cells were represented by the HLA-negative LCL721.221 cell line transfected with the Cw4 allele. Phenotypic and functional analysis of a large number of NK clones showed that clones expressing the activatory p50/EB6 molecules consistently coexpressed inhibitory receptors for other HLA class I alleles.(ABSTRACT TRUNCATED AT 400 WORDS)


2020 ◽  
Vol 2020 ◽  
pp. 1-11 ◽  
Author(s):  
Bo Liang ◽  
Xin He ◽  
Yu-Xiu Zhao ◽  
Xiao-Xiao Zhang ◽  
Ning Gu

Exosomes can reach distant tissues through blood circulation to communicate directly with target cells and rapidly regulate intracellular signals. Exosomes play an important role in cardiovascular pathophysiology. Different exosomes derived from different sources, and their cargos have different mechanisms of action. In addition to being biomarkers, exosomes also have a certain significance in the diagnosis, treatment, and even prevention of cardiovascular diseases. Here, we provide a review of the up-to-date applications of exosomes, derived from various sources, in the prognosis and diagnosis of cardiovascular diseases.


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