scholarly journals Strategy For Cellulase Immobilization And Its Partial Purification And Characterization

Author(s):  
Karina Komarova

Conversion of cellulose to glucose units by cellulases, called hydrolysis, is a very complex step in ethanol production. It requires the mixing of aqueous suspensions of cellulose/cellulases so that cellulases (majority composed of the active site domain and the binding site domain) can attach to cellulose chains, cut or hydrolyze ß(1-4) glycosidic bonds between glucose units, de-attach and move to another location. Mixing extent (insufficient or excessive agitation) might influence the attachment of cellulases and possibly lead to lower glucose yields. A long-term goal of this research is to determine the strength of mixing required to be applied during the cellulose-cellulase mixing cycle. For that purpose, one of the objectives was to purify CBH I exocellulase from the commercial cellulase mixture. A partial purification of the CBH I that was performed on a much smaller scale with uncontrolled flow rate was successful. Another objective was to propose a scheme that would covalently immobilize CBH I exoceullase via its active site domain (ASD) on an atomic force microscopy-compatible support, a silicon support. A theoretically-developed hypothetical scheme was constructed (with the provided detailed procedure). The approach of immobilizing the inhibitor specific to the ASD of CBH I enzyme led to the possibility that no purification of CBH I could be required. Skipping CBH I purification step would save time and hassle associated with purification step. Once the ASD of CBH I is immobilized on a silicon support, the AFM force profile between the free-floating CDB and substrate cellulose could be established.

2021 ◽  
Author(s):  
Karina Komarova

Conversion of cellulose to glucose units by cellulases, called hydrolysis, is a very complex step in ethanol production. It requires the mixing of aqueous suspensions of cellulose/cellulases so that cellulases (majority composed of the active site domain and the binding site domain) can attach to cellulose chains, cut or hydrolyze ß(1-4) glycosidic bonds between glucose units, de-attach and move to another location. Mixing extent (insufficient or excessive agitation) might influence the attachment of cellulases and possibly lead to lower glucose yields. A long-term goal of this research is to determine the strength of mixing required to be applied during the cellulose-cellulase mixing cycle. For that purpose, one of the objectives was to purify CBH I exocellulase from the commercial cellulase mixture. A partial purification of the CBH I that was performed on a much smaller scale with uncontrolled flow rate was successful. Another objective was to propose a scheme that would covalently immobilize CBH I exoceullase via its active site domain (ASD) on an atomic force microscopy-compatible support, a silicon support. A theoretically-developed hypothetical scheme was constructed (with the provided detailed procedure). The approach of immobilizing the inhibitor specific to the ASD of CBH I enzyme led to the possibility that no purification of CBH I could be required. Skipping CBH I purification step would save time and hassle associated with purification step. Once the ASD of CBH I is immobilized on a silicon support, the AFM force profile between the free-floating CDB and substrate cellulose could be established.


2019 ◽  
Vol 9 (1) ◽  
Author(s):  
A. Amir Hassan ◽  
Miguel V. Vitorino ◽  
Tiago Robalo ◽  
Mário S. Rodrigues ◽  
Isabel Sá-Correia

Abstract The influence that Burkholderia cenocepacia adaptive evolution during long-term infection in cystic fibrosis (CF) patients has on cell wall morphology and mechanical properties is poorly understood despite their crucial role in cell physiology, persistent infection and pathogenesis. Cell wall morphology and physical properties of three B. cenocepacia isolates collected from a CF patient over a period of 3.5 years were compared using atomic force microscopy (AFM). These serial clonal variants include the first isolate retrieved from the patient and two late isolates obtained after three years of infection and before the patient’s death with cepacia syndrome. A consistent and progressive decrease of cell height and a cell shape evolution during infection, from the typical rods to morphology closer to cocci, were observed. The images of cells grown in biofilms showed an identical cell size reduction pattern. Additionally, the apparent elasticity modulus significantly decreases from the early isolate to the last clonal variant retrieved from the patient but the intermediary highly antibiotic resistant clonal isolate showed the highest elasticity values. Concerning the adhesion of bacteria surface to the AFM tip, the first isolate was found to adhere better than the late isolates whose lipopolysaccharide (LPS) structure loss the O-antigen (OAg) during CF infection. The OAg is known to influence Gram-negative bacteria adhesion and be an important factor in B. cenocepacia adaptation to chronic infection. Results reinforce the concept of the occurrence of phenotypic heterogeneity and adaptive evolution, also at the level of cell size, form, envelope topography and physical properties during long-term infection.


2006 ◽  
Vol 6 (11) ◽  
pp. 3572-3576 ◽  
Author(s):  
Hee-Sang Shim ◽  
Hyo-Jin Ahn ◽  
Youn-Su Kim ◽  
Yung-Eun Sung ◽  
Won Bae Kim

We report electrochromic and electrochemical properties of a WO3-Ta2O5 nanocomposite electrode that was fabricated from co-sputtering. Transmission electron microscopy (TEM)images of the WO3-Ta2O5 nanocomposite electrode revealed that morphology of the WO3 film was changed by incorporation of Ta2O5 nanoparticles, and their chemical states were confirmed to be W6+ and Ta5+ oxides from X-ray photoelectron spectroscopy (XPS). The introduction of Ta2O5 to the WO3 film played a role in alleviating surface roughness increase during continuous potential cycling; whereas the surface roughness of the WO3 film was increased from ca. 3.0 nm to ca. 13.4 nm after 400 cycles, the roughness increase on the WO3-Ta2O5 was significantly reduced to 4.2 nm after 400 cycles, as investigated by atomic force microscopy (AFM). This improvement of the stability by adding Ta2O5 may be responsible for the enhanced electrochemical and optical properties over long-term cycling with the WO3-Ta2O5 nanocomposite electrode.


2021 ◽  
Vol 91 (2) ◽  
pp. 365
Author(s):  
М.Э. Бузоверя ◽  
Г.Е. Гаврилов ◽  
О.Е. Маев

Using Atomic Force Microscopy Methods, we studied the samples of the cathodes of multiwire proportional chambers after long-term irradiation with a beta-source 90Sr at the longevity test. The changes in the morphology of the copper foil surface at the cathode of the detector as a result of the influence of the electron flow are described. It is presented a quantitative assessment and analysis of the evolution of the resulting radiation defects depending on the irradiation conditions. It is shown the similarity of the radiation defects in the laboratory prototypes and in full scale proportional chambers that have been operated at the LHC for almost 10 years.


Nanoscale ◽  
2021 ◽  
Author(s):  
Lene Gammelgaard ◽  
Patrick Rebsdorf Whelan ◽  
Timothy J Booth ◽  
Peter Bøggild

In this work, we use atomic force microscopy (AFM) to investigate the long-term evolution of oxidative defects of tungsten diselenide (WSe2) in ambient conditions over a period of 75 months,...


2014 ◽  
Vol 1652 ◽  
Author(s):  
Tzu-Chieh Tang ◽  
Carlo A. Amadei ◽  
Matteo Chiesa

ABSTRACTAdsorption of charged biomolecules onto atomically flat mica substrates is facilitated by the deposition of metal ions. Despite successfully acting as preferential anchoring sites, the presence of ions on the mica surface also changes its physicochemical characteristics something that is rarely quantified from a nanoscale point of view. In this study the nanoscale physicochemical properties of nickel-functionalized Muscovite mica are investigated by reconstructing the conservative force profile between an atomic force microscopy (AFM) tip and the surface. Various nickel ion concentrations (i.e. 1.0 mM to 20.0 mM) along with different incubation times (30 seconds and 5 minutes) are directly analyzed. Details in the spatial and temporal variations in surface properties due to the ion mediated adsorption of water are presented in details and in light of the binding efficiency of the metal ions. This insight benefits our understanding in the behavior of ion distribution that plays a crucial role in biomolecule imaging using AFM.


2016 ◽  
Vol 213 (12) ◽  
pp. 3110-3116 ◽  
Author(s):  
Eduardo Ortega ◽  
Oliver Rodríguez-Martínez ◽  
Miguel Figueroa-Labastida ◽  
Andrés Alberto Villa-Pulido ◽  
Antonio Sánchez-Fernández ◽  
...  

Materials ◽  
2020 ◽  
Vol 13 (17) ◽  
pp. 3714
Author(s):  
Zuzanna Trzcińska ◽  
Marc Bruggeman ◽  
Hanieh Ijakipour ◽  
Nikolas J. Hodges ◽  
James Bowen ◽  
...  

Infections are common complications in joint replacement surgeries. Eradicated infections can lead to implant failure. In this paper, analogues of the peptide KR-12 derived from the human cathelicidin LL-37 were designed, synthesised, and characterised. The designed antimicrobial peptides (AMPs) were attached to the surface of a titanium alloy, Ti6Al4V, by conjugation to a polydopamine linking substrate. The topography of the polydopamine coating was evaluated by electron microscopy and coating thickness measurements were performed with ellipsometry and Atomic Force Microscopy (AFM). The subsequently attached peptide stability was investigated with release profile studies in simulated body fluid, using both fluorescence imaging and High-Performance Liquid Chromatography (HPLC). Finally, the hydrophobicity of the coating was characterised by water contact angle measurements. The designed AMPs were shown to provide long-term bonding to the polydopamine-coated Ti6Al4V surfaces.


1999 ◽  
Vol 556 ◽  
Author(s):  
Peter J. Bedrossian ◽  
Joseph C. Farmer ◽  
R. Daniel McCright ◽  
Douglas L. Phinney ◽  
John C. Estill

AbstractCoupons of titanium alloys under consideration as components of the Engineered Barrier System in the proposed repository at Yucca Mountain have been evaluatedfor their passive film composition and stability. Oxide depths and compositions on specimens exposed in long-term corrosion testing for one year were determined with x-ray photoemission spectroscopy. The specimens removed from long-term testing, as well as separate coupons polarized cathodically in an electrochemical cell, exhibited blistering associated with hydride formation in both scanning electron microscopy and atomic force microscopy.


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