Characterization of Clinical MRSA Isolates from Northern Spain and Assessment of Their Susceptibility to Phage-Derived Antimicrobials

Methicillin-resistant Staphylococcus aureus (MRSA) is a prevalent nosocomial pathogen, causing a wide range of diseases. The increased frequency of MRSA isolates in hospitals and the emergence of vancomycin resistance have sparked the search for new control strategies. This study aimed to characterize sixty-seven MRSA isolates collected from both infected patients and asymptomatic carriers in a Spanish hospital. RAPD-PCR allowed the identification of six genetic patterns. We also investigated the presence of genes involved in producing adhesins, toxins and the capsule; the biofilm; and antimicrobial resistance. A notable percentage of the isolates carried virulence genes and showed medium-high ability to form biofilms. Next, we assessed the strains’ susceptibility to two phages (phiIPLA-C1C and phiIPLA-RODI) and one endolysin (LysRODI). All strains were resistant to phiIPLA-C1C, and most (70.2%) were susceptible to phiIPLA-RODI. Regarding LysRODI, all strains displayed susceptibility, although to varying degrees. There was a correlation between endolysin susceptibility and the random amplification of polymorphic DNA (RAPD) profile or the presence of some virulence genes (fnbA, eta, etb, PVL and czr), but that was not observed with biofilm-forming ability, strain origin or phage sensitivity. Taken together, these findings can help to explain the factors influencing endolysin effectiveness, which will contribute to the development of efficient therapies targeting MRSA infections.

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Characteristic of Pseudomonas syringae pv. atrofaciens Isolated from Weeds of Wheat Field

Applied Sciences ◽

10.3390/app11010286 ◽

2020 ◽

Vol 11 (1) ◽

pp. 286

Author(s):

Liudmyla Butsenko ◽

Lidiia Pasichnyk ◽

Yuliia Kolomiiets ◽

Antonina Kalinichenko ◽

Dariusz Suszanowicz ◽

...

Keyword(s):

Fatty Acids ◽

Pseudomonas Syringae ◽

Causative Agent ◽

Control Measure ◽

Wheat Field ◽

Basal Glume ◽

Rapd Pcr ◽

Microbiological Methods ◽

Random Amplification ◽

Wide Range

The aim of this study was the identification of the causative agent of the basal glume rot of wheat Pseudomonas syringae pv. atrofaciens from the affected weeds in wheat crops, and determination of its virulent properties. Isolation of P. syringae pv. atrofaciens from weeds of wheat crops was carried out by classical microbiological methods. To identify isolated bacteria, their morphological, cultural, biochemical, and serological properties as well as fatty acids and Random Amplification of Polymorphic DNA (RAPD)-PCR (Polymerase chain reaction) profiles with the OPA-13 primer were studied. Pathogenic properties were investigated by artificial inoculation of wheat plants and weed plants, from which bacteria were isolated. For the first time, bacteria that are virulent both for weeds and wheat were isolated from weeds growing in wheat crops. It was shown that the fatty acids profiles of the bacteria isolated from the weeds contained typical for P. syringae pv. atrofaciens fatty acids, in particular, hydroxy acids: 3-hydroxydecanoic, 2-hydroxydodecanoic, and 3-hydroxydodecanoic. RAPD-PCR profiles of the newly isolated strains were identical to those of the collection strains P. syringae pv. atrofaciens UCM B-1011 and P. syringae pv. atrofaciens UCM B-1014 and contained a dominant fragment of 700 bp. The isolated strains, according to their phenotypic and genotypic properties, were identified as P. syringae pv. atrofaciens. It was established that the causative agent of basal glume rot of wheat P. syringae pv. atrofaciens is polyphagous and capable of infecting a wide range of plants. The main control measure for cereals diseases caused by P. syringae pv. Atrofaciens—crop rotations with nonhost species, should be revised, and alternative control methods must be proposed.

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An Outbreak of ESBL-producing Klebsiella pneumoniae in an Iranian Referral Hospital: Epidemiology and Molecular Typing

Infectious Disorders - Drug Targets ◽

10.2174/1871526518666180507121831 ◽

2019 ◽

Vol 19 (1) ◽

pp. 46-54 ◽

Cited By ~ 4

Author(s):

Shima Mahmoudi ◽

Babak Pourakbari ◽

Aliakbar Rahbarimanesh ◽

Mohammad Reza Abdosalehi ◽

Keyghobad Ghadiri ◽

...

Keyword(s):

Klebsiella Pneumoniae ◽

Nosocomial Infections ◽

Molecular Typing ◽

Genetic Relatedness ◽

Referral Hospital ◽

Limited Information ◽

Hospital Epidemiology ◽

Rapd Pcr ◽

Published Report ◽

Random Amplification

Introduction: Klebsiella pneumoniae is a common cause of nosocomial infections; however, there is limited information in Iran regarding nosocomial outbreaks due to extended-spectrum &#946;–lactamase (ESBL) producing K pneumoniae strains, particularly using molecular methods. The present study focused on the molecular mechanism of ESBL resistance and genetic relatedness in K. pneumoniae isolates causing nosocomial infections in an Iranian referral hospital. Material and Methods: This study evaluated the antimicrobial resistance and molecular epidemiology of K. pneumoniae causing nosocomial infections in children between October 2013 and March 2014. The ESBL detection was carried out for all the isolates by the CLSI method and PCR was carried out for the detection of the blaSHV, blaTEM, and blaCTX-M genes among ESBL-producing K. pneumonia. Molecular typing of the K. pneumoniae was performed using random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR). Results: A total of 30 isolates of K. pneumoniae were used for epidemiological analysis. High rates of resistance to cefotaxime (n=29, 97%), cefazolin (n=29, 97%), cefepime (n=25, 83%) and gentamicin (n=23, 77%) were observed. A total of 29 strains (97%) produced ESBLs. The frequency of blaSHV, blaCTX-M and blaTEM genes among these isolates was 83% (n=25), 70% (n=21) and 57% (n=17), respectively. Surprisingly 11 isolated (37%) carried blaSHV, blaCTX-M and blaTEM genes simultaneously. Moreover, the concurrent presence of “blaSHV and blaCTX-M” and “blaSHV and blaTEM” was seen in 8 (27%) and 4 (13%) isolates, respectively. RAPDPCR analyses revealed that K. pneumoniae isolates belonged to 2 RAPD-PCR types among which one cluster counted for 28 isolates. Conclusion: To our knowledge, this is the first published report of a nosocomial outbreak of ESBL-producing K. pneumoniae in children in Iran. Although the epidemiology of nosocomial infections with ESBL-producing organisms has not yet been explored in depth in Iran, our findings suggest that ESBL-producing organisms are already an established public health threat in our country.

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Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants

Scientific Reports ◽

10.1038/s41598-021-88318-0 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Medelin Ocejo ◽

Beatriz Oporto ◽

José Luis Lavín ◽

Ana Hurtado

Keyword(s):

Genetic Diversity ◽

Antimicrobial Resistance ◽

Campylobacter Jejuni ◽

Resistance Genes ◽

Campylobacter Coli ◽

Whole Genome ◽

Northern Spain ◽

Sequence Alignments ◽

Phenotypic Data ◽

Wide Range

AbstractCampylobacter, a leading cause of gastroenteritis in humans, asymptomatically colonises the intestinal tract of a wide range of animals.Although antimicrobial treatment is restricted to severe cases, the increase of antimicrobial resistance (AMR) is a concern. Considering the significant contribution of ruminants as reservoirs of resistant Campylobacter, Illumina whole-genome sequencing was used to characterise the mechanisms of AMR in Campylobacter jejuni and Campylobacter coli recovered from beef cattle, dairy cattle, and sheep in northern Spain. Genome analysis showed extensive genetic diversity that clearly separated both species. Resistance genotypes were identified by screening assembled sequences with BLASTn and ABRicate, and additional sequence alignments were performed to search for frameshift mutations and gene modifications. A high correlation was observed between phenotypic resistance to a given antimicrobial and the presence of the corresponding known resistance genes. Detailed sequence analysis allowed us to detect the recently described mosaic tet(O/M/O) gene in one C. coli, describe possible new alleles of blaOXA-61-like genes, and decipher the genetic context of aminoglycoside resistance genes, as well as the plasmid/chromosomal location of the different AMR genes and their implication for resistance spread. Updated resistance gene databases and detailed analysis of the matched open reading frames are needed to avoid errors when using WGS-based analysis pipelines for AMR detection in the absence of phenotypic data.

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Marine Organisms for the Sustainable Management of Plant Parasitic Nematodes

Plants ◽

10.3390/plants10020369 ◽

2021 ◽

Vol 10 (2) ◽

pp. 369

Author(s):

Pasqua Veronico ◽

Maria Teresa Melillo

Keyword(s):

Crop Production ◽

Control Strategies ◽

Marine Organisms ◽

New Drugs ◽

Effective Control ◽

Parasitic Nematodes ◽

Plant Parasitic Nematodes ◽

Wide Range ◽

Plant Growth Stimulants ◽

Plant Parasitic

Plant parasitic nematodes are annually responsible for the loss of 10%–25% of worldwide crop production, most of which is attributable to root-knot nematodes (RKNs) that infest a wide range of agricultural crops throughout the world. Current nematode control tools are not enough to ensure the effective management of these parasites, mainly due to the severe restrictions imposed on the use of chemical pesticides. Therefore, it is important to discover new potential nematicidal sources that are suitable for the development of additional safe and effective control strategies. In the last few decades, there has been an explosion of information about the use of seaweeds as plant growth stimulants and potential nematicides. Novel bioactive compounds have been isolated from marine cyanobacteria and sponges in an effort to find their application outside marine ecosystems and in the discovery of new drugs. Their potential as antihelmintics could also be exploited to find applicability against plant parasitic nematodes. The present review focuses on the activity of marine organisms on RKNs and their potential application as safe nematicidal agents.

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Wolbachia: endosymbiont of onchocercid nematodes and their vectors

Parasites & Vectors ◽

10.1186/s13071-021-04742-1 ◽

2021 ◽

Vol 14 (1) ◽

Author(s):

Ranju Ravindran Santhakumari Manoj ◽

Maria Stefania Latrofa ◽

Sara Epis ◽

Domenico Otranto

Keyword(s):

Control Strategies ◽

Molecular Data ◽

Scientific Data ◽

Growth And Survival ◽

Vector Borne Diseases ◽

Wide Range ◽

Veterinary Importance ◽

Wolbachia Endosymbiont ◽

Vector Borne ◽

And Control

Abstract Background Wolbachia is an obligate intracellular maternally transmitted, gram-negative bacterium which forms a spectrum of endosymbiotic relationships from parasitism to obligatory mutualism in a wide range of arthropods and onchocercid nematodes, respectively. In arthropods Wolbachia produces reproductive manipulations such as male killing, feminization, parthenogenesis and cytoplasmic incompatibility for its propagation and provides an additional fitness benefit for the host to protect against pathogens, whilst in onchocercid nematodes, apart from the mutual metabolic dependence, this bacterium is involved in moulting, embryogenesis, growth and survival of the host. Methods This review details the molecular data of Wolbachia and its effect on host biology, immunity, ecology and evolution, reproduction, endosymbiont-based treatment and control strategies exploited for filariasis. Relevant peer-reviewed scientic papers available in various authenticated scientific data bases were considered while writing the review. Conclusions The information presented provides an overview on Wolbachia biology and its use in the control and/or treatment of vectors, onchocercid nematodes and viral diseases of medical and veterinary importance. This offers the development of new approaches for the control of a variety of vector-borne diseases. Graphic Abstract

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Detection of virulence genes of APEC (avian pathogenic Escherichia coli) isolated from poultry in Noakhali, Bangladesh

Bioresearch Communications ◽

10.3329/brc.v7i1.54253 ◽

2021 ◽

Vol 7 (1) ◽

pp. 967-972

Author(s):

Farzana Ehetasum Hossain ◽

Saiful Islam ◽

Md Aminul Islam ◽

Shariful Islam ◽

Firoz Ahmed

Keyword(s):

Escherichia Coli ◽

Virulence Genes ◽

Virulence Gene ◽

Economic Loss ◽

Point Of View ◽

Pcr Analysis ◽

Avian Pathogenic Escherichia Coli ◽

Gene Profiles ◽

Pathogenic Escherichia Coli ◽

Wide Range

Avian colibacillosis, caused by avian pathogenic Escherichia coli (APEC), is one of the major infectious diseases of poultry that bring about great economic loss for the Bangladesh poultry industry. The present study aimed to determine the virulence genes of avian pathogenic Escherichia coli (APEC) from cases of colibacillosis in poultry at the Noakhali district of Bangladesh. Currently, virulence-associated gene profiles of APEC isolates were investigated by polymerase chain reaction (PCR). A total of 24 (twenty-four) Escherichia coli isolates were collected and presumptively identified from 8 (eight) colibacillosis cases from 4 commercial broiler poultry farms (2 broilers per farm) in Noakhali, Bangladesh. The pathogenesis of Escherichia coli involves a wide range of different virulence genes. At this point, four virulence genes, iutA, hlyF, iroN, and iss were detected by PCR analysis. It has been observed that iutA, iss, hlyF, and iroN genes were found in 7(29.16%), 20(83.33%), 22(91.66%), and 24(100%) APEC isolates respectively. Furthermore, out of the twenty-four APEC isolates, six (25%) isolates had four virulence genes, fourteen (58.33%) isolates carried at least three virulence genes, three (12.5%) isolates carried two genes and one (4.16%) isolates had one virulence gene. Most importantly. six types of virulence gene profiles existed within the APEC isolates from which profile number 3 (hlyF, iroN, iss) having 13 (54.16%) isolates were predominant. The occurrence of APEC isolates of this region which is responsible for avian colibacillosis cases can be a matter of concern from the public health point of view. Future investigations will be able to utilize these virulence genes to identify APEC in Bangladesh helping in the diagnosis and prevention of colibacillosis in poultry. Bioresearch Commu. 7(1): 967-972, 2021 (January)

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Energy consumption optimization for AC drives position control

COMPEL The International Journal for Computation and Mathematics in Electrical and Electronic Engineering ◽

10.1108/compel-10-2019-0429 ◽

2021 ◽

Vol ahead-of-print (ahead-of-print) ◽

Author(s):

Branislav Ftorek ◽

Milan Saga ◽

Pavol Orsansky ◽

Jan Vittek ◽

Peter Butko

Keyword(s):

Control System ◽

Energy Saving ◽

Energy Savings ◽

Position Control ◽

Control Strategies ◽

Content Type ◽

Ac Drives ◽

Energy Demands ◽

Wide Range ◽

Energy Consumption Optimization

Purpose The main purpose of this paper is to evaluate the two energy saving position control strategies for AC drives valid for a wide range of boundary conditions including an analysis of their energy expenses. Design/methodology/approach For energy demands analysis, the optimal energy control based on mechanical and electrical losses minimization is compared with the near-optimal one based on symmetrical trapezoidal speed profile. Both control strategies respect prescribed maneuver time and define acceleration profile for preplanned rest-to-rest maneuver. Findings Presented simulations confirm lower total energy expenditures of energy optimal control if compared with near-optimal one, but the differences are only small due to the fact that two energy saving strategies are compared. Research limitations/implications Developed overall control system consisting of energy saving profile generator, pre-compensator and position control system respecting principles of field-oriented control is capable to track precomputed state variables precisely. Practical implications Energy demands of both control strategies are verified and compared to simulations and preliminary experiments. The possibilities of energy savings were confirmed for both control strategies. Originality/value Experimental verification of designed control structure is sufficiently promising and confirmed assumed energy savings.

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Effect of Environmental Factors on Germination and Emergence of Shortawn Foxtail (Alopecurus aequalis)

Weed Science ◽

10.1017/wsc.2017.42 ◽

2017 ◽

Vol 66 (1) ◽

pp. 47-56 ◽

Cited By ~ 12

Author(s):

Ning Zhao ◽

Qi Li ◽

Wenlei Guo ◽

Lele Zhang ◽

Lu’an Ge ◽

...

Keyword(s):

Seed Germination ◽

Osmotic Potential ◽

Control Strategies ◽

Abiotic Factors ◽

Germination Rate ◽

Seedling Emergence ◽

Soil Surface ◽

Burial Depth ◽

Effective Measure ◽

Wide Range

Shortawn foxtail is an invasive grass weed infesting winter wheat and canola production in China. A better understanding of the germination ecology of shortawn foxtail would help to develop better control strategies for this weed. Experiments were conducted under laboratory conditions to evaluate the effects of various abiotic factors, including temperature, light, pH, osmotic stress, salt concentration, and planting depth, on seed germination and seedling emergence of shortawn foxtail. The results showed that the seed germination rate was greater than 90% over a wide range of constant (5 to 25C) and alternating (15/5 to 35/25C) temperatures. Maximum germination occurred at 20C or 25/15C, and no germination occurred at 35C. Light did not appear to have any effect on seed germination. Shortawn foxtail germination was 27% to 99% over a pH range of 4 to 10, and higher germination was obtained at alkaline pH values ranging from 7 to 10. Seed germination was sensitive to osmotic potential and completely inhibited at an osmotic potential of −0.6 MPa, but it was tolerant to salinity: germination even occurred at 200 mM NaCl (5%). Seedling emergence was highest (98%) when seeds were placed on the soil surface but declined with the increasing burial depth. No seedlings emerged when seeds were buried 6-cm deep. Deep tillage could be an effective measure to limit seed germination from increased burial depth. The results of this study will lead to a better understanding of the requirements for shortawn foxtail germination and emergence and will provide information that could contribute to its control.

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Analysis of virulence factors and emm typing of Streptococcus pyogenes clinical isolates.

10.7287/peerj.preprints.27649v1 ◽

2019 ◽

Author(s):

Gustavo Enck Sambrano ◽

Gustavo P Riboldi ◽

Keli C Reiter ◽

Thiago Galvão da Silva Paim ◽

Neidmar Correa Tolfo ◽

...

Keyword(s):

Virulence Factors ◽

Streptococcus Pyogenes ◽

Virulence Genes ◽

Clinical Isolates ◽

Pcr Analysis ◽

Tissue Tropism ◽

Factors Analysis ◽

Wide Range ◽

Group A ◽

Micro Organisms

Background: Streptococcus pyogenes, a Group A streptococci (GAS), is an important human pathogen that causes a wide range of infections. Methods: Twenty five clinical isolates of S. pyogenes were submitted to an emm typing and to a Real-time PCR analysis for 23 important virulence factors. Results: Fourteen emm types were found and the emm1 type was the most prevalent. The majority of the isolates were classified as emm pattern E, followed by A-C3. No pattern D was found. Among the virulence factors, the most prevalent were SpeG, Slo, C5a-peptidase and SPNA. Phage encoded virulence genes were also found among the strains, such as mf-2, SpeJ and SpeL. Discussion: The emm1 type was the most prevalent while the 13 others M types were distributed along the strains. No tissue tropism was found on the isolates. The virulence factors analysis demonstrated that chromosomally and phage-encoded genes were found, which confers a potential for high virulent micro-organisms.

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