scholarly journals Integrative Transcriptomic and Proteomic Analysis Reveals an Alternative Molecular Network of Glutamine Synthetase 2 Corresponding to Nitrogen Deficiency in Rice (Oryza sativa L.)

2021 ◽  
Vol 22 (14) ◽  
pp. 7674
Author(s):  
Ting Liang ◽  
Zhengqing Yuan ◽  
Lu Fu ◽  
Menghan Zhu ◽  
Xiaoyun Luo ◽  
...  
Keyword(s):  
Glutamine Synthetase ◽  
Oryza Sativa L ◽  
Alternative Pathway ◽  
Rice Variety ◽  
Nitrogen Deficiency ◽  
Primary Root ◽  
Phenotypic Characterization ◽  
Glutathione Metabolism ◽  
N Assimilation ◽  
N Deficiency

Nitrogen (N) is an essential nutrient for plant growth and development. The root system architecture is a highly regulated morphological system, which is sensitive to the availability of nutrients, such as N. Phenotypic characterization of roots from LY9348 (a rice variety with high nitrogen use efficiency (NUE)) treated with 0.725 mM NH4NO3 (1/4N) was remarkable, especially primary root (PR) elongation, which was the highest. A comprehensive analysis was performed for transcriptome and proteome profiling of LY9348 roots between 1/4N and 2.9 mM NH4NO3 (1N) treatments. The results indicated 3908 differential expression genes (DEGs; 2569 upregulated and 1339 downregulated) and 411 differential abundance proteins (DAPs; 192 upregulated and 219 downregulated). Among all DAPs in the proteome, glutamine synthetase (GS2), a chloroplastic ammonium assimilation protein, was the most upregulated protein identified. The unexpected concentration of GS2 from the shoot to the root in the 1/4N treatment indicated that the presence of an alternative pathway of N assimilation regulated by GS2 in LY9348 corresponded to the low N signal, which was supported by GS enzyme activity and glutamine/glutamate (Gln/Glu) contents analysis. In addition, N transporters (NRT2.1, NRT2.2, NRT2.3, NRT2.4, NAR2.1, AMT1.3, AMT1.2, and putative AMT3.3) and N assimilators (NR2, GS1;1, GS1;2, GS1;3, NADH-GOGAT2, and AS2) were significantly induced during the long-term N-deficiency response at the transcription level (14 days). Moreover, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis demonstrated that phenylpropanoid biosynthesis and glutathione metabolism were significantly modulated by N deficiency. Notably, many transcription factors and plant hormones were found to participate in root morphological adaptation. In conclusion, our study provides valuable information to further understand the response of rice roots to N-deficiency stress.

scholarly journals The Overexpression of NUC Promotes Development and Increases Resistance to Nitrogen Deficiency in Arabidopsis thaliana

2021 ◽  
Vol 22 (21) ◽  
pp. 11413
Author(s):  
Jing Ling ◽  
Xing Huang ◽  
Yanxia Jia ◽  
Weiqi Li ◽  
Xudong Zhang
Keyword(s):  
Binding Sites ◽  
Lateral Roots ◽  
Nitrogen Deficiency ◽  
Primary Root ◽  
Regulatory Function ◽  
Promoter Regions ◽  
Juvenile Stages ◽  
N Deficiency ◽  
Primary Root Length ◽  
Insight Into

NUTCRACKER (NUC) is a transcription factor expressed in multiple tissues, but little is known about its physiological roles. In this study, we explored the physiological function of NUC with the Arabidopsis knockout, rescue, and overexpression lines. We found that NUC overexpression promoted development at the germination, seedling, and juvenile stages. NUC overexpression increased resistance to nitrogen (N) deficiency stress by increasing the chlorophyll content, suppressing anthocyanin accumulation, and increasing the biomass under N deficiency. In contrast, the absence of NUC did not affect such characteristics. N deficiency significantly increased the expression of NUC in leaves but did not affect the expression of NUC in roots. The overexpression of NUC promoted primary root length under both normal and N deficiency conditions. Furthermore, we found that the N-responsive and lateral-root-related genes TGA1 and NRT2.4 had NUC-binding sites in their promoter regions and that their expression was upregulated by NUC under N deficiency. The overexpression of the NUC increased the number and length of the lateral roots under N deficiency through inducible promotion. Multiple lines of investigation suggest that the regulatory function of the NUC could be bypassed through its redundant MAGPIE (MGP) when the NUC is absent. Our findings provide novel insight into NUC’s functions and will assist efforts to improve plants’ development and resistance to nutrient stresses.

Phenotypic Characterization and Genetic Mapping of an Increased Stigma Mutant in Rice (Oryza sativa L.)

2011 ◽  
Vol 37 (10) ◽  
pp. 1779-1784
Author(s):  
Ming-Jing ZHOU ◽  
Yong WEN ◽  
Shuang-Cheng LI ◽  
Cheng-Bo LI ◽  
Man-Hua ZHANG ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Genetic Mapping ◽  
Oryza Sativa L ◽  
Phenotypic Characterization

scholarly journals Optimal Nitrogen Supply Ameliorates the Performance of Wheat Seedlings under Osmotic Stress in Genotype-Specific Manner

Plants ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 493 ◽  
Author(s):  
Tania Kartseva ◽  
Anelia Dobrikova ◽  
Konstantina Kocheva ◽  
Vladimir Alexandrov ◽  
Georgi Georgiev ◽  
...  
Keyword(s):  
Osmotic Stress ◽  
Stress Tolerance ◽  
Wheat Variety ◽  
Growth And Yield ◽  
Physiological Status ◽  
Wheat Seedlings ◽  
Modern Variety ◽  
N Supply ◽  
N Assimilation ◽  
N Deficiency

Strategies and coping mechanisms for stress tolerance under sub-optimal nutrition conditions could provide important guidelines for developing selection criteria in sustainable agriculture. Nitrogen (N) is one of the major nutrients limiting the growth and yield of crop plants, among which wheat is probably the most substantial to human diet worldwide. Physiological status and photosynthetic capacity of two contrasting wheat genotypes (old Slomer and modern semi-dwarf Enola) were evaluated at the seedling stage to assess how N supply affected osmotic stress tolerance and capacity of plants to survive drought periods. It was evident that higher N input in both varieties contributed to better performance under dehydration. The combination of lower N supply and water deprivation (osmotic stress induced by polyethylene glycol treatment) led to greater damage of the photosynthetic efficiency and a higher degree of oxidative stress than the individually applied stresses. The old wheat variety had better N assimilation efficiency, and it was also the one with better performance under N deficiency. However, when both N and water were deficient, the modern variety demonstrated better photosynthetic performance. It was concluded that different strategies for overcoming osmotic stress alone or in combination with low N could be attributed to differences in the genetic background. Better performance of the modern variety conceivably indicated that semi-dwarfing (Rht) alleles might have a beneficial effect in arid regions and N deficiency conditions.

scholarly journals Physiological and Proteomic Dissection of the Responses of Two Contrasting Wheat Genotypes to Nitrogen Deficiency

2020 ◽  
Vol 21 (6) ◽  
pp. 2119 ◽  
Author(s):  
Mohammad Rezaul Karim ◽  
Ruonan Wang ◽  
Lu Zheng ◽  
Xiaoying Dong ◽  
Renfang Shen ◽  
...  
Keyword(s):  
Aluminum Toxicity ◽  
Nitrogen Deficiency ◽  
Differentially Expressed Proteins ◽  
Sulfate Assimilation ◽  
Label Free ◽  
Proteomics Analysis ◽  
Tetrapyrrole Synthesis ◽  
Adaptive Processes ◽  
Physiological Indexes ◽  
N Deficiency

Nitrogen deficiency usually occurs along with aluminum toxicity in acidic soil, which is one of the major constraints for wheat production worldwide. In order to compare adaptive processes to N deficiency with different Al-tolerant wheat cultivars, we chose Atlas 66 and Scout 66 to comprehensively analyze the physiological responses to N deficiency, coupled with label-free mass spectrometry-based proteomics analysis. Results showed that both cultivars were comparable in most physiological indexes under N deficient conditions. However, the chlorophyll content in Scout 66 was higher than that of Atlas 66 under N deficiency. Further proteomic analysis identified 5592 and 5496 proteins in the leaves of Atlas 66 and Scout 66, respectively, of which 658 and 734 proteins were shown to significantly change in abundance upon N deficiency, respectively. The majority of the differentially expressed proteins were involved in cellular N compound metabolic process, photosynthesis, etc. Moreover, tetrapyrrole synthesis and sulfate assimilation were particularly enriched in Scout 66. Our findings provide evidence towards a better understanding of genotype-dependent responses under N deficiency which could help us to develop N efficient cultivars to various soil types.

scholarly journals Effects of the components of conservation agriculture on the profitability of rice (Oryza sativa L.) in the Eastern Gangetic Plain of Bangladesh

2021 ◽  
Vol 7 (1) ◽  
pp. 333-337
Author(s):  
Hossain M ◽  
◽  
Begum M ◽  
Rahman M ◽  
Hashem A ◽  
...  
Keyword(s):  
Oryza Sativa L ◽  
Block Design ◽  
Rice Variety ◽  
Conservation Agriculture ◽  
Conventional Tillage ◽  
Cost Ratio ◽  
Gangetic Plain ◽  
Benefit Cost Ratio ◽  
On Farm ◽  
Residue Retention

A two year longer on-farm research on conservation agriculture was conducted at Bhangnamari area of Bangladesh during November-June in 2014-15 and 2015-16 to evaluate the performance of non-puddled rice cultivation under increased crop residue retention. The rice variety BRRI dhan28 was transplanted under puddled conventional tillage (CT) vs. non-puddled strip tillage (ST) with 50% standing residue (R50) vs. conventional no-residue (R0) practice. The treatments were arranged in a randomized complete block design with four replications. There were no significant yield differences between tillage practices and residue levels in 2014-15. But in the following year, ST yielded 9% more grain compared to CT leading to 22% higher BCR. Retention of 50% residue increased yield by 3% over no-residue, which contributed to 10% higher benefit-cost ratio (BCR). Results of this two year on-farm study confirmed that the ST combined with 50% residue retention yielded the highest grain yield (5.81 t ha-1) which contributed to produce the highest BCR (1.06).

scholarly journals Phenotypic characterization and fine mapping of mps1, a premature leaf senescence mutant in rice (Oryza sativa L.)

2016 ◽  
Vol 15 (9) ◽  
pp. 1944-1954 ◽  
Author(s):  
Zhong-xian LIU ◽  
Yu CUI ◽  
Zhong-wei WANG ◽  
Yuan-hua XIE ◽  
Xian-chun SANG ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Leaf Senescence ◽  
Fine Mapping ◽  
Oryza Sativa L ◽  
Phenotypic Characterization ◽  
Premature Leaf Senescence

scholarly journals Microstructural and physiological responses to cadmium stress under different nitrogen levels in Populus cathayana females and males

2020 ◽  
Vol 40 (1) ◽  
pp. 30-45 ◽  
Author(s):  
Miao Liu ◽  
Jingwen Bi ◽  
Xiucheng Liu ◽  
Jieyu Kang ◽  
Helena Korpelainen ◽  
...  
Keyword(s):  
Nitrogen Deficiency ◽  
Ion Homeostasis ◽  
N Availability ◽  
Cd Stress ◽  
Cd Accumulation ◽  
N Supply ◽  
Populus Cathayana ◽  
N Deficiency ◽  
Cellular Compartments ◽  
Cd Translocation

Abstract Although increasing attention has been paid to the relationships between heavy metal and nitrogen (N) availability, the mechanism underlying adaptation to cadmium (Cd) stress in dioecious plants has been largely overlooked. This study examined Cd accumulation, translocation and allocation among tissues and cellular compartments in Populus cathayana Rehder females and males. Both leaf Cd accumulation and root-to-shoot Cd translocation were significantly greater in females than in males under a normal N supply, but they were reduced in females and enhanced in males under N deficiency. The genes related to Cd uptake and translocation, HMA2, YSL2 and ZIP2, were strongly induced by Cd stress in female roots and in males under a normal N supply. Cadmium largely accumulated in the leaf blades of females and in the leaf veins of males under a normal N supply, while the contrary was true under N deficiency. Furthermore, Cd was mainly distributed in the leaf epidermis and spongy tissues of males, and in the leaf palisade tissues of females. Nitrogen deficiency increased Cd allocation to the spongy tissues of female leaves and to the palisade tissues of males. In roots, Cd was preferentially distributed to the epidermis and cortices in both sexes, and also to the vascular tissues of females under a normal N supply but not under N deficiency. These results suggested that males possess better Cd tolerance compared with females, even under N deficiency, which is associated with their reduced root-to-shoot Cd translocation, specific Cd distribution in organic and/or cellular compartments, and enhanced antioxidation and ion homeostasis. Our study also provides new insights into engineering woody plants for phytoremediation.

scholarly journals Molecular and Phenotypic Characterization for Cold Tolerance in Rice (Oryza sativa L.)

2020 ◽  
Vol 23 (2) ◽  
pp. 1-15
Author(s):  
PS Biswas ◽  
H Khatun ◽  
M Anisuzzaman
Keyword(s):  
Cold Stress ◽  
Cold Tolerance ◽  
Oryza Sativa L ◽  
Gene Diversity ◽  
Reproductive Stage ◽  
Seedling Stage ◽  
Phenotypic Characterization ◽  
Breeding Lines ◽  
Upgma Dendrogram ◽  
Ssr Loci

Cold stress affects growth and development of rice plants from germination to reproductive stages. Thirty breeding lines/varieties including tolerant and susceptible check varieties were evaluated for cold tolerance at seedling and reproductive stage using artificially induced low temperature situations to understand the genetic relationship among them and to identify promising donors for cold tolerance. Three breeding lines, BR8253-9-3-4-3, IR77497-31-2-3-1and IR2266-42-6-2 demonstrated higher cold tolerance for the seedling stage (LD score <3.0). Molecular analysis revealed 68% genetic similarity among the genotypes. On average 64% of the breeding lines shared common alleles at any given locus ranging from 27% (RM22870) to 97% (RM186). UPGMA dendrogram showed that majority of the breeding lines showing 4-5 degrees of LD were grouped together. Two breeding lines, BR8258-7-1-5-2B2 and BR8258-7-1-5-2B3 having 86% common alleles showed low leaf discoloration (LD: 4) at seedling stage coupled with relatively low reduction in spikelet fertility (45.8% and 48.1%) and grain yield (43.3% and 39.1%). The gene diversity and PIC value revealed that seven SSR loci (RM1282, RM600, RM5349, RM6972, RM5847, RM5911, and RM511) might be the best markers to differentiate between tolerant and susceptible genotypes at reproductive stage. The breeding lines with tolerance to cold stress at the seedling and the reproductive stages identified from this study, and the SSR markers mentioned above could be useful for developing cold tolerance rice. Bangladesh Rice j. 2019, 23(2): 1-15

scholarly journals RNA-Seq Transcriptome Analysis of Rice Primary Roots Reveals the Role of Flavonoids in Regulating the Rice Primary Root Growth

Genes ◽  
2019 ◽  
Vol 10 (3) ◽  
pp. 213
Author(s):  
Yu Xu ◽  
Junjie Zou ◽  
Hongyan Zheng ◽  
Miaoyun Xu ◽  
Xuefeng Zong ◽  
...  
Keyword(s):  
Cell Wall ◽  
Root Growth ◽  
Primary Root ◽  
Glutathione Metabolism ◽  
Auxin Signaling ◽  
Antioxidant Enzyme Activities ◽  
Rna Seq ◽  
Root Tips ◽  
Primary Roots ◽  
Quercetin Treatment

Flavonoids play important roles in root development and in its tropic responses, whereas the flavonoids-mediated changes of the global transcription levels during root growth remain unclear. Here, the global transcription changes in quercetin-treated rice primary roots were analyzed. Quercetin treatment significantly induced the inhibition of root growth and the reduction of H2O2 and O2− levels. In addition, the RNA-seq analysis revealed that there are 1243 differentially expressed genes (DEGs) identified in quercetin-treated roots, including 1032 up-regulated and 211 down-regulated genes. A gene ontology (GO) enrichment analysis showed that the enriched GO terms are mainly associated with the cell wall organization, response to oxidative stress, and response to hormone stimulus. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment pathway analysis showed that the enriched DEGs are involved in phenylpropanoid biosynthesis, glutathione metabolism, and plant hormone signal transduction. Moreover, the quercetin treatment led to an increase of the antioxidant enzyme activities of catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD) in rice roots. Also, the quercetin treatment altered the DR5:GUS expression pattern in the root tips. All of these data indicated that the flavonoids-mediated transcription changes of genes are related to the genes involved in cell wall remodeling, redox homeostasis, and auxin signaling, leading to a reduced cell division in the meristem zone and cell elongation in the elongation zone of roots.

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