scholarly journals Metagenomic, Metabolomic, and Functional Evaluation of Kimchi Broth Treated with Light-Emitting Diodes (LEDs)

Metabolites ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 472
Author(s):  
Yeong-Ji Oh ◽  
Ye-Rin Park ◽  
Jungil Hong ◽  
Do-Yup Lee
Keyword(s):  
Amplicon Sequencing ◽  
Taxonomic Composition ◽  
Metabolic Phenotype ◽  
Rrna Gene ◽  
Functional Evaluation ◽  
Initial Condition ◽  
Microbial Composition ◽  
Light Emitting ◽  
Blue Led ◽  
Red Led

The light-emitting diode (LED) has been widely used in the food industry, and its application has been focused on microbial sterilization, specifically using blue-LED. The investigation has been recently extended to characterize the biotic and abiotic (photodynamic) effects of different wavelengths. Here, we investigated LED effects on kimchi fermentation. Kimchi broths were treated with three different colored-LEDs (red, green, and blue) or kept in the dark as a control. Multiomics was applied to evaluate the microbial taxonomic composition using 16S rRNA gene amplicon sequencing, and the metabolomic profiles were determined using liquid chromatography–Orbitrap mass spectrometry. Cell viability was tested to determine the potential cytotoxicity of the LED-treated kimchi broths. First, the amplicon sequencing data showed substantial changes in taxonomic composition at the family and genus levels according to incubation (initial condition vs. all other groups). The differences among the treated groups (red-LED (RLED), green-LED (GLED), blue-LED (BLED), and dark condition) were marginal. The relative abundance of Weissella was decreased in all treated groups compared to that of the initial condition, which coincided with the decreased composition of Lactobacillus. Compositional changes were relatively high in the GLED group. Subsequent metabolomic analysis indicated a unique metabolic phenotype instigated by different LED treatments, which led to the identification of the LED treatment-specific and common compounds (e.g., luteolin, 6-methylquinoline, 2-hydroxycinnamic acid, and 9-HODE). These results indicate that different LED wavelengths induce characteristic alterations in the microbial composition and metabolomic content, which may have applications in food processing and storage with the aim of improving nutritional quality and the safety of food.

scholarly journals The Associations between Diet and Socioeconomic Disparities and the Intestinal Microbiome in Preadolescence

Nutrients ◽  
2021 ◽  
Vol 13 (8) ◽  
pp. 2645
Author(s):  
Yelena Lapidot ◽  
Leah Reshef ◽  
Rebecca Goldsmith ◽  
Wasef Na’amnih ◽  
Eias Kassem ◽  
...  
Keyword(s):  
Fatty Acids ◽  
Polyunsaturated Fatty Acids ◽  
Dietary Intake ◽  
Growth Period ◽  
Amplicon Sequencing ◽  
Taxonomic Composition ◽  
Intestinal Microbiome ◽  
Rrna Gene ◽  
Microbial Composition ◽  
Microbiome Composition

The intestinal microbiome continues to shift and develop throughout youth and could play a pivotal role in health and wellbeing throughout adulthood. Environmental and interpersonal determinants are strong mediators of the intestinal microbiome during the rapid growth period of preadolescence. We aim to delineate associations between the gut microbiome composition, body mass index (BMI), dietary intake and socioeconomic status (SES) in a cohort of ethnically homogenous preadolescents. This cohort included 139 Arab children aged 10–12 years, from varying socioeconomic strata. Dietary intake was assessed using the 24-h recall method. The intestinal microbiome was analyzed using 16S rRNA gene amplicon sequencing. Microbial composition was associated with SES, showing an overrepresentation of Prevotella and Eubacterium in children with lower SES. Higher BMI was associated with lower microbial diversity and altered taxonomic composition, including higher levels of Collinsella, especially among participants from lower SES. Intake of polyunsaturated fatty acids was the strongest predictor of bacterial alterations, including an independent association with Lachnobacterium and Lactobacillus. This study demonstrates that the intestinal microbiome in preadolescents is associated with socioeconomic determinants, BMI and dietary intake, specifically with higher consumption of polyunsaturated fatty acids. Thus, tailored interventions during these crucial years have the potential to improve health disparities throughout the lifespan.

scholarly journals The Microbial Communities of Leaves and Roots Associated with Turtle Grass (Thalassia testudinum) and Manatee Grass (Syringodium filliforme) are Distinct from Seawater and Sediment Communities, but Are Similar between Species and Sampling Sites

2018 ◽  
Vol 7 (1) ◽  
pp. 4 ◽  
Author(s):  
Kelly Ugarelli ◽  
Peeter Laas ◽  
Ulrich Stingl
Keyword(s):  
Carbon Sink ◽  
Amplicon Sequencing ◽  
Thalassia Testudinum ◽  
Rrna Gene ◽  
Microbial Composition ◽  
Carbon Cycles ◽  
Syringodium Filiforme ◽  
Turtle Grass ◽  
Shoreline Protection ◽  
The 16S Rrna Gene

Seagrasses are vital members of coastal systems, which provide several important ecosystem services such as improvement of water quality, shoreline protection, and serving as shelter, food, and nursery to many species, including economically important fish. They also act as a major carbon sink and supply copious amounts of oxygen to the ocean. A decline in seagrasses has been observed worldwide, partly due to climate change, direct and indirect human activities, diseases, and increased sulfide concentrations in the coastal porewaters. Several studies have shown a symbiotic relationship between seagrasses and their microbiome. For instance, the sulfur, nitrogen, and carbon cycles are important biochemical pathways that seem to be linked between the plant and its microbiome. The microbiome presumably also plays a key role in the health of the plant, for example in oxidizing phyto-toxic sulfide into non-toxic sulfate, or by providing protection for seagrasses from pathogens. Two of the most abundant seagrasses in Florida include Thalassia testudinum (turtle grass) and Syringodium filliforme (manatee grass), yet there is little data on the composition of the microbiome of these two genera. In this study, the microbial composition of the phyllosphere and rhizosphere of Thalassia testudinum and Syringodium filiforme were compared to water and sediment controls using amplicon sequencing of the V4 region of the 16S rRNA gene. The microbial composition of the leaves, roots, seawater, and sediment differ from one another, but are similar between the two species of seagrasses.

scholarly journals Bacterial Diversity of Water and Sediment Samples from Gull Point State Park (West Okoboji, Iowa) Determined Using 16S rRNA Gene Amplicon Sequencing

2021 ◽  
Vol 10 (33) ◽  
Author(s):  
John A. Kyndt
Keyword(s):  
16S Rrna ◽  
Amplicon Sequencing ◽  
Rrna Gene ◽  
Great Lakes Region ◽  
Primary State ◽  
Microbial Composition ◽  
The West ◽  
Sediment Samples ◽  
Water And Sediment ◽  
Water And Sediment Samples

Gull Point State Park is located on a peninsula on the west shore of West Okoboji Lake (Iowa, USA). It is the primary state park in the Iowa Great Lakes region. Sediment and water samples from three locations at the Gull Point pond were analyzed for their microbial composition.

scholarly journals Comparative evaluation of cheese whey microbial composition from four Italian cheese factories by viable counts and 16S rRNA gene amplicon sequencing

2020 ◽  
Vol 104 ◽  
pp. 104656 ◽  
Author(s):  
Vinícius da Silva Duarte ◽  
Milena Carlot ◽  
Shadi Pakroo ◽  
Armin Tarrah ◽  
Angiolella Lombardi ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Comparative Evaluation ◽  
Cheese Whey ◽  
Amplicon Sequencing ◽  
Rrna Gene ◽  
Microbial Composition

scholarly journals The effects of LED light spectrum manipulation on growth and color performance of giant gourami Osphronemus gouramy Lacepede Padang strain

2022 ◽  
Vol 21 (1) ◽  
pp. 11-21
Author(s):  
Bambang Kusmayadi Gunawan ◽  
Kukuh Nirmala ◽  
Dinar Tri Soelistyowati ◽  
Daniel Djokosetiyanto ◽  
Wildan Nurussalam
Keyword(s):  
Light Emitting Diode ◽  
Emission Spectra ◽  
Control Treatment ◽  
Light Spectrum ◽  
Light Emitting ◽  
Blue Led ◽  
Pectoral Fins ◽  
Randomized Design ◽  
Red Led ◽  
Effect Of Light

This study aimed to evaluate the effect of light spectrum on growth and color performance of giant giant gourami Padang strain. The experiment used a completely randomized design (RAL) with four light emitting diode (LED) treatments in  different emission spectra (white, red, green, and blue) at 550 Lux intensity, compared to the control treatment (light room with white tubular lamp at 50 Lux intensity). The irradiation was carried out for 12 hours of photoperiod. The fish used had the total length of 82.90±4.2 mm and body weight of 9.87 ± 0.99 g. The highest growth performance was found in blue LED treatment with the specific growth rate of  2.73 ± 0.2% and feed efficiency of 86.26 ± 2.71%. The best color performance was found in red LED treatment with the RGB ratio of 44.57 ± 0.62% in dorsal fin, 38.41 ± 1.36% in pectoral fins, and 45.33 ± 2.25% in anal fin with the chromatophore cell concentration at 1.973±58 cells/mm2.   Keywords : Osphronemus gouramy, blue LED, spectrum, chromatophore, light   ABSTRAK   Penelitian ini bertujuan untuk mengevaluasi pengaruh spektrum cahaya terhadap kinerja pertumbuhan dan warna ikan gurami strain Padang. Rancangan penelitian yang digunakan adalah rancangan acak lengkap (RAL) dengan 4 perlakuan cahaya lampu light emitting diodes (LED)  yang memiliki spektrum panjang gelombang berbeda (putih, merah, hijau dan biru) intensitas 550 Lux dan kontrol (cahaya ruang berasal dari lampu tubular putih intensitas 50 Lux). Penyinaran dilakukan selama 12 jam mengikuti fotoperiod. Ikan uji yang digunakan memiliki panjang total 82,90 ± 4,2 mm, dengan bobot 9,87 ± 0,99 g. Kinerja pertumbuhan terbaik terdapat pada perlakuan LED biru dengan laju pertumbuhan spesifik sebesar 2,73 ± 0,2% dan efisiensi pakan sebesar 86,26 ± 2,71%. Performa warna terbaik terdapat pada perlakuan LED merah dengan rasio warna merah pada RGB bagian dorsal sebesar 44,57 ± 0,62%, sirip pektoral sebesar 38,41 ± 1,36%, dan sirip anal sebesar 45,33 ±  2,25% dengan jumlah sel kromatofor sebanyak 1973 sel/mm2.   Kata kunci : Osphronemus gouramy, LED biru, spektrum, kromatofor, cahaya        

scholarly journals Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genusDioon

2018 ◽  
Author(s):  
Pablo de Jesús Suárez-Moo ◽  
Andrew P. Vovides ◽  
M. Patrick Griffith ◽  
Francisco Barona-Gómez ◽  
Angélica Cibrián-Jaramillo
Keyword(s):  
Bacterial Diversity ◽  
Natural Populations ◽  
Amplicon Sequencing ◽  
Botanical Garden ◽  
Taxonomic Composition ◽  
Rrna Gene ◽  
Biological Interactions ◽  
Plant Growth Promoting ◽  
Coralloid Roots ◽  
Root Microbiome

AbstractCycads are among the few plants that have developed specialized roots to host nitrogen-fixing bacteria. We describe the bacterial diversity of the coralloid roots from sevenDioonspecies and their surrounding rhizosphere and soil. Using 16S rRNA gene amplicon sequencing, we found that all coralloid roots are inhabited by a broad diversity of bacterial groups, including cyanobacteria and Rhizobiales among the most abundant groups. The diversity and composition of the endophytes are similar in the six Mexican species ofDioonthat we evaluated, suggesting a recent divergence ofDioonpopulations and/or similar plant-driven restrictions in maintaining the coralloid root microbiome. Botanical garden samples and natural populations have a similar taxonomic composition, although the beta diversity differed between these populations. The rhizosphere surrounding the coralloid root serves as a reservoir and source of mostly diazotroph and plant growth-promoting groups that colonize the coralloid endosphere. In the case of cyanobacteria, the endosphere is enriched withNostocspp andCalothrixspp that are closely related to previously reported symbiont genera in cycads and other early divergent plants. The data reported here provide an in-depth taxonomic characterization of the bacterial community associated with coralloid root microbiome. The functional aspects of the endophytes, their biological interactions, and their evolutionary history are the next research step in this recently discovered diversity within the cycad coralloid root microbiome.

scholarly journals Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets

2020 ◽  
Author(s):  
Yan Hui ◽  
Paulina Tamez-Hidalgo ◽  
Tomasz Cieplak ◽  
Gizaw Dabessa Satessa ◽  
Witold Kot ◽  
...  
Keyword(s):  
Basal Diet ◽  
Amplicon Sequencing ◽  
Saccharina Latissima ◽  
Blood Levels ◽  
Rrna Gene ◽  
Microbiota Composition ◽  
Colon Mucosa ◽  
Gut Health ◽  
Microbial Composition ◽  
Final Body Weight

AbstractThe direct use of medical zinc oxide (ZnO) in feed will be abandoned after 2022 in Europe, leaving an urgent need for substitutes to prevent post-weaning disorders. This study assessed whether rapeseed meal added two brown macroalagae species (Saccharina latissima and Ascophylum nodosum) and fermented using lactic acid bacteria (FRS) could improve piglet performance and gut health. The weaned piglets were fed one of three different feeding regimens (n = 230 each): basal diet, 2.5% and 5% FRS from day 28 of life to day 85. The piglets fed with 2.5% FRS presented superior phenotype with alleviated intraepithelial and stromal lymphocytes infiltration in the gut, enhanced colon mucosa barrier as well as numerically improvements of final body weight. Colon microbiota composition was determined using amplicon sequencing of the V3 and V1 – V8 region of the 16S rRNA gene using Illumina Nextseq and Oxford Nanopore MinION sequencing, respectively. The two amplicon sequencing strategies showed high consistence between the detected bacteria. Both sequencing technologies showed that the FRS fed piglets had a distinctly different microbial composition relative to the basal diet. Compared with piglets fed the basal diet, Prevotella stercorea was verified by both technologies to be more abundant in the FRS piglets, and positively correlated with colon mucosa thickness and negatively correlated with blood levels of leucocytes and IgG. In conclusion, FRS supplementation improved gut health of weaner piglets, and altered their gut microbiota composition. Increasing the dietary inclusion of FRS from 2.5% to 5% did not cause further improvements.

FLUORESCENT LIGHT (FL), RED LED AND BLUE LED SPECTRUMS EFFECTS ON IN VITRO SHOOTS MULTIPLICATION

2016 ◽  
Vol 78 (6-6) ◽  
Author(s):  
Nurul Syahirah Azmi ◽  
Robiah Ahmad ◽  
Rusli Ibrahim
Keyword(s):  
Large Scale ◽  
Ornamental Plants ◽  
Fruit Production ◽  
Fluorescent Light ◽  
Alternative Source ◽  
Light Emitting ◽  
Blue Led ◽  
In Vitro Shoots ◽  
Red Led

Tissue culture in ornamental plants is one of the relevant factors that beat production of vegetables and fruit production worldwide. It has been recognized as an effective tool to enhance large scale of plant multiplication. However, the conventional lighting system may contain unnecessary wavelength that are low quality to promote growth. In this study, experiment was conducted by using Light Emitting Diodes (LED) as an alternative source of lighting. Red and blue LEDs along with fluorescent light (FL) were applied to determine the best source of light in multiplication of rose. Under the same media regimes which are MS media basal and BAP shoot hormone, blue LED had shown more shoots and leaves. 

scholarly journals Assessment of commercial companion animal kefir products for label accuracy of microbial composition and quantity

2020 ◽  
Vol 98 (9) ◽  
Author(s):  
Breanna N Metras ◽  
Maxwell J Holle ◽  
Valerie J Parker ◽  
Michael J Miller ◽  
Kelly S Swanson
Keyword(s):  
Bacterial Species ◽  
Amplicon Sequencing ◽  
Companion Animal ◽  
Fermented Food ◽  
Health Claims ◽  
Rrna Gene ◽  
Microbial Composition ◽  
Wide Range ◽  
Long Read ◽  
Number Of Microorganisms

Abstract Kefir is a fermented beverage containing yeast and bacteria produced by the fermentation of water or milk with kefir grains. Lack of regulation for probiotic-containing fermented food sold for companion dogs and cats creates the potential for misreporting on viable microbial counts, taxonomy, and label claims. In this study, the microbiota of six companion animal kefir products were measured quantitatively using standard plating techniques. Microbial composition of these products was also characterized by using high-resolution, long-read amplicon sequencing of the 16S rRNA gene. Five products (83%) listed specific microorganisms, and four products (66%) guaranteed colony forming units (CFU)/g on their label. To enumerate viable lactic acid bacteria (LAB), two lots of each homogenized product were plated upon opening and following 14 d on deMan Rogosa and Sharpe (MRS) agar and incubated under anaerobic and aerobic conditions. Results from point of opening revealed that all commercial kefir products with a guaranteed CFU/g overstated the number of microorganisms present by at least 1 log, with only one product exceeding 1 × 109 CFU/g. Sequencing results demonstrated that none of the labels claiming specific bacterial genera and species on their labels were correct, and all products contained at least three additional bacterial species above the minimum detectable threshold (0.001% relative abundance) that were not disclosed by the manufacturer. In addition to the incorrect viable CFU and bacterial taxonomies, several of the product labels and websites contained a wide range of health claims, none of which are supported by the companion animal literature. Our results demonstrate a low level of accuracy in the labeling of commercial kefir products intended for use in dogs and cats. Regulatory agencies, veterinarians, pet food professionals, and pet owners must scrutinize these products and demand a higher level of accuracy and quality in the future.

scholarly journals Embryo Development and Behavior in Sea Urchin (Tripneustes gratilla) Under Different Light Emitting Diodes Condition

2021 ◽  
Vol 8 ◽  
Author(s):  
Yi-Yen Li ◽  
Feng-Jie Su ◽  
Yi-Jui Hsieh ◽  
Tai-Chun Huang ◽  
Yung-Song Wang
Keyword(s):  
Embryonic Development ◽  
Full Spectrum ◽  
Light Emitting ◽  
Blue Led ◽  
Led Light ◽  
Phototactic Response ◽  
Red Led ◽  
Tripneustes Gratilla ◽  
Strong Stimulation ◽  
And Behavior

This study aims to evaluate the effect of light-emitting diodes (LEDs) of different wavelengths on the embryonic development, covering behavior, righting behavior, and phototaxis of collector urchins (Tripneustes gratilla). The collector urchins were divided into three groups according to the type of LED illumination they received: full-spectrum (400–750 nm wavelength), red light (630 nm), or blue light (450 nm). The results of the embryonic development experiment indicated that the blue LED group had the highest proportion of embryos reaching the prism stage at the 24th hour and the highest proportion of embryos entering the 4-arm pluteus stage, but it also had the highest death rate at the 48th hour. The full-spectrum and red LED groups exhibited similar speeds of embryonic development. In the experiment on covering behavior performed on adult urchins, our findings indicated that the blue LED group gripped the most acrylic sheets for cover, exhibiting the most covering behavior, followed by the full-spectrum group and then the red LED group. Moreover, behavior varied with coloration, as collector urchins with a lower level of melanin exhibited more covering behavior than those with a higher melanin level. In addition, the righting behavior experiments demonstrated that the blue LED group spent the longest time righting themselves. It is possible that the relatively strong stimulation from the blue LED illumination led to a higher level of stress in the collector urchins and hence slowed their righting. The phototaxis experiment revealed the most significant negative phototactic response in collector urchins when they were under the blue LED light, followed by the full-spectrum light; the red LED light did not induce any positive or negative phototactic response in the collector urchins. This experimental result verified collector urchins’ high sensitivity to and dislike of the blue LED light. The study results confirmed that the blue LED light environment accelerated the embryonic development of collector urchins; however, the relatively strong stimulation from that light also caused them to engage in covering behavior or move away from the light. These results indicate that short-wavelength irradiation significantly affects the embryonic development and behavior pattern of this species.

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