UNIVERSAL EQUATION OF METAL RESISTANCE DEPENDENCE TO DEFORMATION ON CONDITIONS OF THERMOPLASTIC PROCESSING

Salmonella is a leading cause of bacterial infections in animals and humans. We sequenced a collection of 450 Salmonella strains from diseased animals to better understand the genetic makeup of their virulence and resistance features. The presence of Salmonella pathogenicity islands (SPIs) varied by serotype. S. Enteritidis carried the most SPIs (n = 15), while S. Mbandaka, S. Cerro, S. Meleagridis, and S. Havana carried the least (n = 10). S. Typhimurium, S. Choleraesuis, S. I 4,5,12:i:-, and S. Enteritidis each contained the spv operon on IncFII or IncFII-IncFIB hybrid plasmids. Two S. IIIa carried a spv operon with spvD deletion on the chromosome. Twelve plasmid types including 24 hybrid plasmids were identified. IncA/C was frequently associated with S. Newport (83%) and S. Agona (100%) from bovine, whereas IncFII (100%), IncFIB (100%), and IncQ1 (94%) were seen in S. Choleraesuis from swine. IncX (100%) was detected in all S. Kentucky from chicken. A total of 60 antimicrobial resistance genes (ARGs), four disinfectant resistances genes (DRGs) and 33 heavy metal resistance genes (HMRGs) were identified. The Salmonella strains from sick animals contained various SPIs, resistance genes and plasmid types based on the serotype and source of the isolates. Such complicated genomic structures shed light on the strain characteristics contributing to the severity of disease and treatment failures in Salmonella infections, including those causing illnesses in animals.

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Heavy Metal Tolerance Trend in Extended-Spectrum β-Lactamase Encoding Strains Recovered from Food Samples

International Journal of Environmental Research and Public Health ◽

10.3390/ijerph18094718 ◽

2021 ◽

Vol 18 (9) ◽

pp. 4718

Author(s):

Kashaf Junaid ◽

Hasan Ejaz ◽

Iram Asim ◽

Sonia Younas ◽

Humaira Yasmeen ◽

...

Keyword(s):

Heavy Metal ◽

Metal Tolerance ◽

Heavy Metal Tolerance ◽

Heavy Metal Resistance ◽

Metal Resistance ◽

Food Samples ◽

Esbl Production ◽

Extended Spectrum ◽

Retail Food ◽

Esbl Producers

This study evaluates bacteriological profiles in ready-to-eat (RTE) foods and assesses antibiotic resistance, extended-spectrum β-lactamase (ESBL) production by gram-negative bacteria, and heavy metal tolerance. In total, 436 retail food samples were collected and cultured. The isolates were screened for ESBL production and molecular detection of ESBL-encoding genes. Furthermore, all isolates were evaluated for heavy metal tolerance. From 352 culture-positive samples, 406 g-negative bacteria were identified. Raw food samples were more often contaminated than refined food (84.71% vs. 76.32%). The predominant isolates were Klebsiella pneumoniae (n = 76), Enterobacter cloacae (n = 58), and Escherichia coli (n = 56). Overall, the percentage of ESBL producers was higher in raw food samples, although higher occurrences of ESBL-producing E. coli (p = 0.01) and Pseudomonas aeruginosa (p = 0.02) were observed in processed food samples. However, the prevalence of ESBL-producing Citrobacter freundii in raw food samples was high (p = 0.03). Among the isolates, 55% were blaCTX-M, 26% were blaSHV, and 19% were blaTEM. Notably, heavy metal resistance was highly prevalent in ESBL producers. These findings demonstrate that retail food samples are exposed to contaminants including antibiotics and heavy metals, endangering consumers.

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Analysis of 56,348 Genomes Identifies the Relationship between Antibiotic and Metal Resistance and the Spread of Multidrug-Resistant Non-Typhoidal Salmonella

Microorganisms ◽

10.3390/microorganisms9071468 ◽

2021 ◽

Vol 9 (7) ◽

pp. 1468

Author(s):

Gavin J. Fenske ◽

Joy Scaria

Keyword(s):

Antibiotic Resistance ◽

Foodborne Pathogen ◽

Antibiotic Resistance Genes ◽

Multidrug Resistant ◽

Metal Resistance ◽

Group 3 ◽

Group 2 ◽

Occurrence Matrix ◽

Genome Assemblies ◽

Group 1

Salmonella enterica is common foodborne pathogen that generates both enteric and systemic infections in hosts. Antibiotic resistance is common is certain serovars of the pathogen and of great concern to public health. Recent reports have documented the co-occurrence of metal resistance with antibiotic resistance in one serovar of S. enterica. Therefore, we sought to identify possible co-occurrence in a large genomic dataset. Genome assemblies of 56,348 strains of S. enterica comprising 20 major serovars were downloaded from NCBI. The downloaded assemblies were quality controlled and in silico serotyped to ensure consistency and avoid improper annotation from public databases. Metal and antibiotic resistance genes were identified in the genomes as well as plasmid replicons. Co-occurrent genes were identified by constructing a co-occurrence matrix and grouping said matrix using k-means clustering. Three groups of co-occurrent genes were identified using k-means clustering. Group 1 was comprised of the pco and sil operons that confer resistance to copper and silver, respectively. Group 1 was distributed across four serovars. Group 2 contained the majority of the genes and little to no co-occurrence was observed. Metal and antibiotic co-occurrence was identified in group 3 that contained genes conferring resistance to: arsenic, mercury, beta-lactams, sulfonamides, and tetracyclines. Group 3 genes were also associated with an IncQ1 class plasmid replicon. Metal and antibiotic co-occurrence from group 3 genes is mostly isolated to one clade of S. enterica I 4,[5],12:i:-.

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Universal Equation of State Describes Osmotic Pressure throughout Gelation Process

Physical Review Letters ◽

10.1103/physrevlett.125.267801 ◽

2020 ◽

Vol 125 (26) ◽

Author(s):

Takashi Yasuda ◽

Naoyuki Sakumichi ◽

Ung-il Chung ◽

Takamasa Sakai

Keyword(s):

Equation Of State ◽

Osmotic Pressure ◽

Universal Equation ◽

Gelation Process

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Genome-Driven Discovery of Enzymes with Industrial Implications from the Genus Aneurinibacillus

Microorganisms ◽

10.3390/microorganisms9030499 ◽

2021 ◽

Vol 9 (3) ◽

pp. 499

Author(s):

Majid Rasool Kamli ◽

Nada A. Y. Alzahrani ◽

Nahid H. Hajrah ◽

Jamal S. M. Sabir ◽

Adeel Malik

Keyword(s):

Heavy Metal ◽

Enzyme Activities ◽

Heavy Metal Resistance ◽

Industrial Applications ◽

Metal Resistance ◽

The Family ◽

Antiviral Activities ◽

Genome Level ◽

Genome Analyses ◽

Unique Species

Bacteria belonging to the genus Aneurinibacillus within the family Paenibacillaceae are Gram-positive, endospore-forming, and rod-shaped bacteria inhabiting diverse environments. Currently, there are eight validly described species of Aneurinibacillus; however, several unclassified species have also been reported. Aneurinibacillus spp. have shown the potential for producing secondary metabolites (SMs) and demonstrated diverse types of enzyme activities. These features make them promising candidates with industrial implications. At present, genomes of 9 unique species from the genus Aneurinibacillus are available, which can be utilized to decipher invaluable information on their biosynthetic potential as well as enzyme activities. In this work, we performed the comparative genome analyses of nine Aneurinibacillus species representing the first such comprehensive study of this genus at the genome level. We focused on discovering the biosynthetic, biodegradation, and heavy metal resistance potential of this under-investigated genus. The results indicate that the genomes of Aneurinibacillus contain SM-producing regions with diverse bioactivities, including antimicrobial and antiviral activities. Several carbohydrate-active enzymes (CAZymes) and genes involved in heavy metal resistance were also identified. Additionally, a broad range of enzyme classes were also identified in the Aneurinibacillus pan-genomes, making this group of bacteria potential candidates for future investigations with industrial applications.

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Retromobilization of heavy metal resistance genes in unpolluted and heavy metal polluted soil

FEMS Microbiology Ecology ◽

10.1111/j.1574-6941.1995.tb00176.x ◽

1995 ◽

Vol 18 (3) ◽

pp. 191-203 ◽

Cited By ~ 22

Author(s):

Eva M. Top ◽

Helene Rore ◽

Jean-Marc Collard ◽

Veerle Gellens ◽

Galina Slobodkina ◽

...

Keyword(s):

Heavy Metal ◽

Resistance Genes ◽

Heavy Metal Resistance ◽

Metal Resistance ◽

Polluted Soil

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Replication of Staphylococcal Multiresistance Plasmids

Journal of Bacteriology ◽

10.1128/jb.182.8.2170-2178.2000 ◽

2000 ◽

Vol 182 (8) ◽

pp. 2170-2178 ◽

Cited By ~ 53

Author(s):

Neville Firth ◽

Sumalee Apisiridej ◽

Tracey Berg ◽

Brendon A. O'Rourke ◽

Steve Curnock ◽

...

Keyword(s):

Sequence Similarity ◽

Heavy Metal Resistance ◽

Metal Resistance ◽

Replication Initiation ◽

Conjugative Plasmid ◽

Rolling Circle ◽

Segregational Stability ◽

Structural And Functional Properties ◽

Resistance Plasmids ◽

Genes Encoding

ABSTRACT Based on structural and functional properties, three groups of large staphylococcal multiresistance plasmids have been recognized, viz., the pSK1 family, pSK41-like conjugative plasmids, and β-lactamase–heavy-metal resistance plasmids. Here we describe an analysis of the replication functions of a representative of each of these plasmid groups. The replication initiation genes from theStaphylococcus aureus plasmids pSK1, pSK41, and pI9789::Tn552 were found to be related to each other and to the Staphylococcus xylosus plasmid pSX267 and are also related to rep genes of several plasmids from other gram-positive genera. Nucleotide sequence similarity between pSK1 and pI9789::Tn552 extended beyond theirrep genes, encompassing upstream divergently transcribed genes, orf245 and orf256, respectively. Our analyses revealed that genes encoding proteins related to the deducedorf245 product are variously represented, in several types of organization, on plasmids possessing six seemingly evolutionarily distinct types of replication initiation genes and including both theta-mode and rolling-circle replicons. Construction of minireplicons and subsequent functional analysis demonstrated that orf245is required for the segregational stability of the pSK1 replicon. In contrast, no gene equivalent to orf245 is evident on the conjugative plasmid pSK41, and a minireplicon encoding only the pSK41 rep gene was found to exhibit a segregational stability approaching that of the parent plasmid. Significantly, the results described establish that many of the large multiresistance plasmids that have been identified in clinical staphylococci, which were formerly presumed to be unrelated, actually utilize an evolutionarily related theta-mode replication system.

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Draft Genome Sequence of a Selenite- and Tellurite-Reducing Marine Bacterium, Lysinibacillus sp. Strain ZYM-1

Genome Announcements ◽

10.1128/genomea.01552-15 ◽

2016 ◽

Vol 4 (1) ◽

Cited By ~ 1

Author(s):

Yonghe Zhao ◽

Yuxuan Dong ◽

Yiwen Zhang ◽

Lin Che ◽

Haixia Pan ◽

...

Keyword(s):

Genome Sequence ◽

Marine Sediments ◽

High Resistance ◽

Marine Bacterium ◽

Draft Genome ◽

Metal Resistance ◽

Draft Genome Sequence ◽

Gram Positive ◽

Positive Strain ◽

Tellurite Reduction

Lysinibacillus sp. ZYM-1, a Gram-positive strain isolated from marine sediments, reduces selenite and tellurite efficiently. Meanwhile, it also exhibits high resistance to Zn2+ and Mn2+. Here, we report the draft genome sequence of strain ZYM-1, which contains genes related to selenite and tellurite reduction and also metal resistance.

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Insights into high CO-SCR performance of CuCoAlO catalysts derived from LDH/MOFs composites and study of H2O/SO2 and alkali metal resistance

Chemical Engineering Journal ◽

10.1016/j.cej.2021.131873 ◽

2021 ◽

Vol 426 ◽

pp. 131873

Author(s):

Yu Zhang ◽

Ling Zhao ◽

Mengdi Kang ◽

Ziang Chen ◽

Shengjun Gao ◽

...

Keyword(s):

Alkali Metal ◽

Metal Resistance

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Metaplasmidome-encoded functions of Siberian low-centered polygonal tundra soils

The ISME Journal ◽

10.1038/s41396-021-01003-y ◽

2021 ◽

Author(s):

Adrian Gorecki ◽

Stine Holm ◽

Mikolaj Dziurzynski ◽

Matthias Winkel ◽

Sizhong Yang ◽

...

Keyword(s):

Active Layer ◽

Bacterial Communities ◽

Extraction Methods ◽

Metal Resistance ◽

Rapid Adaptation ◽

Tundra Soils ◽

Genetic Traits ◽

Functional Potential ◽

Stress Response Genes ◽

Genes Encoding

AbstractPlasmids have the potential to transfer genetic traits within bacterial communities and thereby serve as a crucial tool for the rapid adaptation of bacteria in response to changing environmental conditions. Our knowledge of the environmental pool of plasmids (the metaplasmidome) and encoded functions is still limited due to a lack of sufficient extraction methods and tools for identifying and assembling plasmids from metagenomic datasets. Here, we present the first insights into the functional potential of the metaplasmidome of permafrost-affected active-layer soil—an environment with a relatively low biomass and seasonal freeze–thaw cycles that is strongly affected by global warming. The obtained results were compared with plasmid-derived sequences extracted from polar metagenomes. Metaplasmidomes from the Siberian active layer were enriched via cultivation, which resulted in a longer contig length as compared with plasmids that had been directly retrieved from the metagenomes of polar environments. The predicted hosts of plasmids belonged to Moraxellaceae, Pseudomonadaceae, Enterobacteriaceae, Pectobacteriaceae, Burkholderiaceae, and Firmicutes. Analysis of their genetic content revealed the presence of stress-response genes, including antibiotic and metal resistance determinants, as well as genes encoding protectants against the cold.

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