scholarly journals MORPHOMETRY AND LASER SCANNER IMAGING: A REVOLUTION IN ANATOMY

2016 ◽  
Vol 7 (1) ◽  
Author(s):  
G. Gelati ◽  
M. Tanga

Anatomy is a visual science, even if the visual quality of anatomy can be declined in different ways, as we will show. Anatomy holds its own main feature in the etymology of the name itself: it is through cutting (ανά, anà) by lancet (τέμνω, tèmno) that preparations are yet prepared. This operation is aimed to make evident and well visible anatomical structures. Vesalius is the first modern anatomist and his main heuristic principle consists in the equivalence between seeing and knowing. The possibility of analyzing fresh anatomical preparations is made short by the unavoidable decomposition processes of the cadaver. Due to this reason beautiful and precious tables have always been drawn, painted and printed. We remember the ones by the Fisiocritic Paolo Mascagni, whose double centenary of death is celebrated this year. Watercolor tables are yet much realized and used. However they are bi-dimensional schematizations and, even if well done, they remain far from reality. Photography allows to fix the image of anatomical preparations with high fidelity of particulars. However these images are static. The graphic synthesis allows to realize four-dimensional human virtual models. They can be rotated according to the three spatial axes and, thanks to this, they can be observed from every point of view. Due to the fact that these are schematizations, they are very far from reality. For this reason CT three-dimensional reconstruction, that rebuilds anatomy in three dimensions, allows to obtain results with very superior quality and fidelity. However these reproductions lack color and real light. The gap between the iconographic representation and the existing thing is and will always be not fully eliminable. However our use of laser scanner technology allows to reduce this gap to minimal levels, with a quick and easy acquisition process. Laser scanner generates a cloud of points of the examined object. Each point is identified through exact coordinates. Besides, the photos of the same object can be over-placed to the cloud. The result is a virtual model that reconstructs the real object, highly corresponding as in morphology and as in colors. This virtual model allows us to interact and we can rotate it, watch at it from every perspective and especially we can measure it. The scanner we have used allowed us to reach an accuracy of ±25 μm. The anatomical preparation is literally “immortalized”, up to under-millimetric details, where the naked eye is ineffective. The so obtained image allows to re-observe and to measure the object forever. We can imagine a lot of very innovative, if not revolutionary applications. We realized our four-dimensional models aiming to attach them to this project. These scanning are of two skulls and of a heart. They are the concrete proof of the possibility of obtaining surprising results in many areas, from normal anatomy to pathological anatomy, from legal medicine to biology. This way of obtaining anatomical images is marking a turning point from a taxonomic, serial and verbal conception of Anatomy to a visual, spatial and mathematical one. Instead of lists of nominal labels we have now coordinates and quantitative/structural references. This makes Anatomy more treatable through digital methods. The visual approach has far origins: since XIII Century, when real (not formal) Renaissance of figurative arts begins, and during following ages, visual paradigms gain more and more importance in human knowledge. Once more we are dwarves on the shoulders of giants. Besides, detecting morphology by laser scanner pushes us to re-configure the relationship between nomothetic and ideographic approach in building scientific models.

1984 ◽  
Vol 247 (3) ◽  
pp. E412-E419 ◽  
Author(s):  
L. S. Hibbard ◽  
R. A. Hawkins

Quantitative autoradiography is a powerful method for studying brain function by the determination of blood flow, glucose utilization, or transport of essential nutrients. Autoradiographic images contain vast amounts of potentially useful information, but conventional analyses can practically sample the data at only a small number of points arbitrarily chosen by the experimenter to represent discrete brain structures. To use image data more fully, computer methods for its acquisition, storage, quantitative analysis, and display are required. We have developed a system of computer programs that performs these tasks and has the following features: 1) editing and analysis of single images using interactive graphics, 2) an automatic image alignment algorithm that places images in register with one another using only the mathematical properties of the images themselves, 3) the calculation of mean images from equivalent images in different experimental serial image sets, 4) the calculation of difference images (e.g., experiment-minus-control) with the option to display only differences estimated to be statistically significant, and 5) the display of serial image metabolic maps reconstructed in three dimensions using a high-speed computer graphics system.


2011 ◽  
Vol 9 (66) ◽  
pp. 77-88 ◽  
Author(s):  
Sachit Butail ◽  
Derek A. Paley

Information transmission via non-verbal cues such as a fright response can be quantified in a fish school by reconstructing individual fish motion in three dimensions. In this paper, we describe an automated tracking framework to reconstruct the full-body trajectories of densely schooling fish using two-dimensional silhouettes in multiple cameras. We model the shape of each fish as a series of elliptical cross sections along a flexible midline. We estimate the size of each ellipse using an iterated extended Kalman filter. The shape model is used in a model-based tracking framework in which simulated annealing is applied at each step to estimate the midline. Results are presented for eight fish with occlusions. The tracking system is currently being used to investigate fast-start behaviour of schooling fish in response to looming stimuli.


2010 ◽  
Vol 654 ◽  
pp. 1-4 ◽  
Author(s):  
STEPHEN WIGGINS

In the 1980s the incorporation of ideas from dynamical systems theory into theoretical fluid mechanics, reinforced by elegant experiments, fundamentally changed the way in which we view and analyse Lagrangian transport. The majority of work along these lines was restricted to two-dimensional flows and the generalization of the dynamical systems point of view to fully three-dimensional flows has seen less progress. This situation may now change with the work of Pouransari et al. (J. Fluid Mech., this issue, vol. 654, 2010, pp. 5–34) who study transport in a three-dimensional time-periodic flow and show that completely new types of dynamical systems structures and consequently, coherent structures, form a geometrical template governing transport.


2012 ◽  
Vol 727-728 ◽  
pp. 26-31 ◽  
Author(s):  
E.P. Rocha ◽  
José Adilson de Castro ◽  
Gláucio Soares Fonseca

The self-reducing agglomerates produced from powders generated within the electric arc furnace and LD converters is of special interest in process of recycling due to the amount of iron and other metals of high economical value. However, the reducibility and inner pore structures play important role on the processing technology of these materials. Aiming at investigating the influence of the agglomerate structure, some two-dimensional metallographic techniques have been used to evaluate the porosity in clusters with inaccurate results, essentially due its three-dimensional features. From the processing technological point of view, the shape and distribution of inner porosity of the powders agglomerates are of fundamental importance due to their effects on the reaction rates involving the present phases taking place into the reduction stage. In this study a 3D serial sectioning imaging reconstruction is proposed to determine local inner porosities and detailed measurements of parameters of pores connections and tortuosities. The averaged porosities results are discussed and compared with traditional measurements based on pycnometry method.


2020 ◽  
Vol 7 (4) ◽  
pp. 268-273
Author(s):  
Gibelli Daniele Maria ◽  
◽  
Poppa Pasquale ◽  
Cappella Annalisa ◽  
Rosati Riccardo ◽  
...  

Introduction The assessment of facial growth has always had a relevant importance in anatomy and morphological sciences. This article aims at presenting a method of facial superimposition between 3D models which provides a topographic map of those facial areas modified by growth. Methodology Eight children aged between 6 and 10 years were recruited. In December 2010 they underwent a 3D scan by the Vivid 910 laser scanner (Konica Minolta, Osaka, Japan). The same procedures were performed another five times, in June 2011, September 2011, January 2012 and September 2012; in total 6 analyses were performed on the same subjects in a time span of 21 months. Three-dimensional digital models belonging to the same individual were then superimposed on each other according to 11 facial landmarks. Three comparisons were performed for each individual, referring to the period between December 2010 and June 2011, between June 2011 and January 2012 and between January and September 2012. Results Results show that the protocol of superimposition gives a reliable image of facial growth with high sensibility: in detail, even the slight facial modifications due to different expressions are recorded. The method can also quantify the point-to-point difference between the two models, and therefore give an indication concerning the general increase or decrease of facial volume. Conclusion This approach may provide useful indications for the analysis of facial growth on a large sample and give a new point of view of the complex field of face development.


1996 ◽  
Vol 11 (29) ◽  
pp. 5261-5277 ◽  
Author(s):  
OMDUTH COCEAL ◽  
STEVEN THOMAS

Following the previous work of Ferretti and Yang on the role of magnetic fields in the theory of conformal turbulence, we show that nonunitary minimal model solutions to two-dimensional magnetohydrodynamics (MHD) obtained by dimensional reduction from three dimensions exist under different (and more restrictive) conditions. From a three-dimensional point of view, these conditions are equivalent to perpendicular flow, in which the magnetic and velocity fields are orthogonal. We extend the analysis to the finite conductivity case and present some approximate solutions, whose connection with the exact ones of the infinite conductivity case is also discussed.


1979 ◽  
Vol 1 (3) ◽  
pp. 210-231 ◽  
Author(s):  
Stephen J. Norton ◽  
Melvin Linzer

Three-dimensional backprojection for reconstructing acoustic reflectivity within a volume is examined. The reflectivity data are acquired by means of a spherical array of point sources-receivers which encloses the object under study. Reconstruction of the image is obtained by back-projecting the recorded pulse-echo data over spherical surfaces in image space. An analytical expression for the point spread function (PSF) generated by the backprojection process has been derived. This expression was evaluated for several different choices of the acoustic pulse: a narrowband pulse, wideband pulse, and two analytically-derived optimum pulses which provide the best sidelobe response and a mainlobe width equal to approximately 0.4Λc, where Λc is the wavelength corresponding to the upper cutoff frequency of the pulse. Excellent agreement was obtained between the theoretical PSF's for the different pulses and those obtained by computer simulation. A number of potential advantages of direct three-dimensional reconstruction relative to two-dimensional tomographic techniques are discussed, including (1) high resolution in three dimensions (2) the possibility of incorporating refraction effects in the reconstruction process (3) reduced sensitivity to limited viewing anglesand (4) improved signal-to-noise ratio (thus minimizing requirements for data redundancy).


1988 ◽  
Vol 98 (3) ◽  
pp. 195-202 ◽  
Author(s):  
Akira Takagi ◽  
Isamu Sando ◽  
Akira Takagi ◽  
Isamu Sando

It is very valuable for temporal bone morphologists to be able to recognize temporal bone serial sections in three dimensions and to be able to measure temporal bone structures three-dimensionally. We can now do 3-dimensional reconstruction to visualize the structures of vestibular endorgans (utricular and saccular maculae) and measure these endorgans in space by means of a small computer system and software that we developed. As well as obtaining the dimensions—such as length and area—of the utricular and saccular maculae, we also found that (1) most of the utricular macula lies in one plane, which is the same as the plane of the lateral semicircular canal, (2) the saccular macula is shaped like part of a sphere, and (3) the angle between the two maculae is less than a right angle. Such knowledge is indispensable to the evaluation of the function of the utricular and saccular maculae.)


Author(s):  
Xiaodong Zou ◽  
Sven Hovmöller

The study of crystals at atomic level by electrons – electron crystallography – is an important complement to X-ray crystallography. There are two main advantages of structure determinations by electron crystallography compared to X-ray diffraction: (i) crystals millions of times smaller than those needed for X-ray diffraction can be studied and (ii) the phases of the crystallographic structure factors, which are lost in X-ray diffraction, are present in transmission-electron-microscopy (TEM) images. In this paper, some recent developments of electron crystallography and its applications, mainly on inorganic crystals, are shown. Crystal structures can be solved to atomic resolution in two dimensions as well as in three dimensions from both TEM images and electron diffraction. Different techniques developed for electron crystallography, including three-dimensional reconstruction, the electron precession technique and ultrafast electron crystallography, are reviewed. Examples of electron-crystallography applications are given. There is in principle no limitation to the complexity of the structures that can be solved by electron crystallography.


Sign in / Sign up

Export Citation Format

Share Document