scholarly journals GENETIC DIVERSITY OF LACTOBACILLI ISOLATED FROM HUMAN INFANT FECES*

Author(s):  
MAGALI SOARES DOS SANTOS POZZA ◽  
LÚCIA HELENA DA SILVA MIGLIORANZA ◽  
JOSÉ EDUARDO GARCIA ◽  
PAULO CESAR POZZA ◽  
ROBERTA MERGUIZO

Seventy-five strains isolated from fecal samples of six children were studied for their morphology and biochemical properties. Genetic diversity of 30 strains was analyzed by using Random Amplified Polymorphic DNA (RAPD). The intestinal isolates were grouped into four clusters. Some strains in group I were 100% similar (Lactobacillus reuteri) while high degree of genetic diversity was found in groups II (standard species), III and IV. Eight strains of group I and group III were identified through biochemical identification, as Lactobacillus reuteri, Lactobacillus acidophilus, Lactobacillus plantarum, Lactobacillus casei and Lactobacillus salivarius, and showed low genetic similarity with type strains. The findings in this study provide a strong basis for exploring the potential of these eight selected lactobacilli strains for use in fermented-milk based products. 

2020 ◽  
Vol 12 (1) ◽  
pp. 27
Author(s):  
MIFTAHORRACHMAN MIFTAHORRACHMAN

ABSTRAK<br />Analisis jarak genetik dilakukan terhadap tujuh populasi pinang<br />(Areca catechu L.), yaitu Sumut-1, Sumut-2, Sumbar-1, Sumbar-2,<br />Sumbar-3, Bengkulu-1 dan Bengkulu-2 hasil eksplorasi pada tahun 1994<br />dan telah dikoleksi di kebun koleksi plasma nutfah palma Kayuwatu,<br />Sulawesi Utara. Tujuan analisis adalah untuk mengetahui seberapa besar<br />jarak  genetik  antara  ke  tujuh  aksesi  pinang  sekaligus  untuk<br />mengelompokkan ketujuh aksesi tersebut. Analisis menggunakan Uji<br />Statistik D 2 dari Mahalanobis, sedangkan untuk pengelompokan populasi<br />menggunakan metode Tocher yang dikemukakan oleh RAO dalam SINGH<br />dan CHAUDARY. Hasil analisis menunjukkan bahwa ketujuh aksesi<br />pinang membentuk 4 kelompok yaitu, kelompok I terdiri dari aksesi<br />Sumbar-1 dan Sumut-1; kelompok II terdiri dari 3 aksesi yaitu Sumbar-3,<br />Sumut-2 dan Bengkulu-1; kelompok III dan kelompok IV masing-masing<br />hanya terdapat satu aksesi yaitu Sumbar-2 dan Bengkulu-2. Jarak genetik<br />paling jauh adalah antara kelompok I dan II dengan nilai D 2 = 1263.137.<br />Sementara jarak genetik antar kelompok terdekat adalah antara kelompok I<br />dan III dengan nilai D 2 = 108.587. Penyumbang terbesar terjadinya<br />pengelompokan tersebut adalah karakter jumlah bekas daun.<br />Kata kunci : Pinang, Areca catechu L., populasi, jarak genetik, Sulawesi<br />Utara<br />ABSTRACT<br />Genetic diversity of seven arecanut (Areca catechu L.)<br />accessions from Sumatera Island<br />Genetic divergence analysis has been done on seven arecanut<br />(Areca catechu L.) populations, i.e, Sumut-1, Sumut-2, Sumbar-1,<br />Sumbar-2, Sumbar-3, Bengkulu-1, and Bengkulu-2 explorated in 1994 and<br />had been collected in Kayuwatu Experimental Garden, North Sulawesi.<br />The purpose of the analysis was to know how far the genetic distance<br />among the seven accessions of the arecanut. The analysis used D 2 statistics<br />of Mahalanobis, while to cluster the population used Tocher Method by<br />Rao. The result showed that there are four groups among the seven<br />accessions of arecanut. Group I consisted of Sumbar-1 and Sumut-1, group<br />II consisted of Sumbar-3, Sumut-2, and Bengkulu-1, and both of group III<br />and group IV consisted of one accession, namely Sumbar-2 and Bengkulu-<br />2 respectively. The largest genetic distance occurred between group I and<br />group II (D 2 = 1263.137) while the smallest genetic distance occurred<br />between group I and group III (D 2 = 108.587). Number of leaf scars was<br />the largest contribution of the grouping.<br />Key words : Arecanut, Areca catehcu L., population, genetic distance,<br />North Sulawesi


2021 ◽  
Author(s):  
Tao He ◽  
Changrong Ye ◽  
Qin Zeng ◽  
Xiaoli Fan ◽  
Tianfang Huang

Abstract Dendrobium nobile Lindl. is one of the most important Orchid plants worldwide. The genotype-by-sequencing (GBS) method has now been widely used to access genetic diversity because of its high-throughput and cost-effective in molecular markers. The goal of this study was to employ the GBS technique for diversity evaluation of D. nobile and determine genetic differences between populations. A total of 129 accessions of D. nobile collected originally between 2019 and 2020 from 10 imitation-wild cultivated populations growing in Sichuan, Guizhou and Yunnan of southwestern China were sequenced, a total of 135G clean reads and a total of 836,786 SNPs of high quality data was yielded and were used for final analysis of genetic diversity and population structure. The quality value 20(Q20) ≥ 92.61%, the quality value 30(Q30) ≥ 82.38%. The GC contents distributed between 37.58% and 38.82%. It was also found that more transitions than transversions, and the ratio of transition/transversion varied from 1.804 to 1.911. By the methods of STRUCTURE, the most appropriate number was found to be k=3, all accessions of D. nobile were classified into three groups, excepts for 14 accessions belonging to admixed group. Phylogenetic tree and principal component analysis (PCA) were consistent with the result. The first two principal components explained a total of 23.25% of the variation by PCA. The genetic diversity of ML population showed the lower genetic diversity as indicated by the effective number of alleles (Ne) = 1.287, polymorphism information content (PIC) = 0.141, and Shannon's information index (I) = 0.205, while WT population showed slightly higher genetic diversity by the Ne =1.512, PIC =0.256, and I =0.360. ML population and other nine populations (FB, FM, FX, LJ, SJ, SP, WL, WT and XM) were the most divergent between them respectively owing to all pairwise Fst values above 0.25, while FM population and FX population were considered identical because the pairwise Fst value was 0.0 between the two populations. Correlation analysis showed that highly significant correlation was observed between genetic distance and actual geographical distance (r = 0.854, P < 0.0001), indicating that the genetic differentiation of the 10 D.nobile populations conformed to the geographical isolation model. Analysis of molecular variance (AMOVA) revealed that the genetic variation was greater within populations (87.8%) than among populations (12.2%). This confirmed that intra-population variation was the main source of genetic variation in 10 D. nobile populations. The results also showed that Nm = 1.799 > 1, indicating that there was gene exchange between different populations. Analysis of unweighted pair-group method with arithmetic mean (UPGMA) suggested that the 10 populations were classified into three groups (Group I, Group II and Group III), Group III could be further divided into two subgroups (Group IIIa and Group IIIb). The results will not only provide valuable information for the level of genetic diversity of D.nobile growing in southwestern of China but also help for formulation of strategies for resource protection and utilization. Moreover, GBS appears as an efficient tool to detect intra-population variation.


2003 ◽  
Vol 60 (2) ◽  
pp. 283-290 ◽  
Author(s):  
Ana Lilia Alzate-Marin ◽  
Márcia Regina Costa ◽  
Aloísio Sartorato ◽  
María José Del Peloso ◽  
Everaldo Gonçalves de Barros ◽  
...  

Genetic diversity is essential for any breeding program. However, breeders tend to concentrate on specific genotypes, which combine traits of interest and may be used as progenitors in several breeding programs. Common bean (Phaseolus vulgaris L.) breeding programs are not different in this sense. In this study, the genetic diversity of 21 common bean elite lines from the Bean Regional Trials conducted by the Embrapa Rice and Bean Research Center was evaluated using the Random Amplified Polymorphic DNA (RAPD) and pedigree analyses. Based on genetic dissimilarity, three groups were defined: group I - lines 1, 9 and 10, with low genetic distances among them (0.00 to 0.06), originated from 11 Mesoamerican parents; group II - 17 lines with genetic distances ranging from 0.03 to 0.33, originated from 50 parents (mostly Mesoamerican); and group III - line 21 (PR 93201472), which parents are the Andean cultivar 'Pompadour' and the cultivar 'Irai' (unknown origin). The genetic distances between line 21 and the lines of the other two groups varied from 0.68 to 0.93. Pedigree analyses demonstrated that cultivars 'Carioca', 'Cornell 49-242', 'Jamapa', 'Tlalnepantla 64', 'Tara' and 'Veranic 2', all of Mesoamerican origin, were the most widely used parents for developing lines present in group II.


1945 ◽  
Vol 44 (1) ◽  
pp. 37-52 ◽  
Author(s):  
Simon Sevitt

The Group I paracolon bacilli formed biochemically a stable group. They fermented glucose, maltose, mannite, and dulcite, but not saccharose. Most of them could be distinguished from Salmonella organisms by the late fermentation of lactose or the production of indole. Many resembled the Newcastle bacillus in being late-dulcite fermenters. Serologically 75% of the strains were identical, each containing the A antigen. Some formed a separate group containing the A antigen, andBact. alkalescensantigen and the C antigen of some Group III strains. The A strains are probably identical with those of Dudgeon & Pulvertaft (1927), but their strains were described as being motile. All Group I strains had minor agglutinins in common with the dysentery bacilli, particularly when freshly isolated. Most of Dudgeon's strains were isolated from cases of urinary infection, but in the present investigation almost all were isolated from the discharges of infants with diarrhoea and enteritis. This organism may be regarded as pathogenic or facultatively so, and deserves a name. I suggest it would be appropriate to attach to it the name of Dudgeon, who was the first to call attention to it.Biochemically Group III bacilli resembled Group I strains but differed in fermenting saccharose. Some were motile. The metabolic and biochemical properties examined were stable. Serologically many (40%) possessed the A antigen, but also possessed a type-specific antigen, E. Others (37%) possessed both C and D antigens, usually C but sometimes D was dominant. These strains are related to the dysentery bacilli by the possession of common, minor antigens. A group of serologically heterogeneous strains remained (23%), generally unrelated to the dysentery bacilli.Most Group II bacilli were stable biochemically, but some were not. Many strains of Group IV were unstable. Serologically, Groups II and IV were mostly heterogeneous, although 24% were included in the A, B, C, D, E pattern. Together they formed but a minority of all the paracolon bacilli.Further serological investigation is required to discover new antigens and to link up the paracolon bacilli isolated from various sources.This work was carried out under a whole-time grant from the Medical Research Council of Ireland to whom I am indebted.I wish to record my very best thanks to my director, Prof. R. A. Q. O'Meara, for his continuous interest and invaluable advice at all times and without whose aid this research would not have been possible. My gratitude and thanks are due to my colleague, Dr J. St L. O'Dea, for his unfailing co-operation, particularly in obtaining all the specimens so quickly, in assisting at the post-mortems, and for many other services too numerous to mention.Thanks are also due to the authorities, doctors and nurses of St Ultan's Hospital, Temple Street Hospital, St Kevin's Hospital, Clonskeagh Fever Hospital, Cork Street Hospital, and the Child Welfare Clinics in Dublin, particularly to Dr F. N. Elcock and Dr T. Murphy for their support and co-operation; to the ‘Diarrhoea and Enteritis’ Committee of the Department of Local Government and Public Health for their supervision of the research; and to the staff of the Department of Bacteriology, Trinity College, Dublin, where the research was carried out, for the help and facilities given.I would like to thank all those general practitioners in Dublin who co-operated by the early notification of cases and in other ways. Finally, I wish to record my appreciation to the Statistics Branch, Department of Industry and Commerce, for their interest and kindness in furnishing a valuable report.


2018 ◽  
Vol 81 (5) ◽  
pp. 738-742 ◽  
Author(s):  
ISABELA S. KRONING ◽  
MARIANA A. IGLESIAS ◽  
KARLA S. MENDONÇA ◽  
GRACIELA V. LOPES ◽  
WLADIMIR P. SILVA

ABSTRACTStaphylococcus aureusis a common causative agent of bovine mastitis in dairy cows and commonly associated with foodborne disease outbreaks. The aim of this study was to evaluate the presence of enterotoxin genes, agr typing, antimicrobial resistance, and genetic diversity of S. aureus isolated from milk of cows with mastitis in dairy farms from southern Brazil. Results showed that 7 (22.6%) of 31 S. aureus isolates were positive for enterotoxin genes. Specifically, the genes encoding for enterotoxins A (n = 4), C (n = 2), and B (n = 1) were detected. Isolates belonging to the agr group III (10 of 31, 32.2%) and agr group I (7 of 31, 22.5%) were the most common. To our knowledge, this is the first report of both agr I and III in the same S. aureus isolate from milk of cows with bovine mastitis. The antimicrobial resistance test showed that 54% of the isolates were multiresistant to antimicrobial agents. The macrorestriction analysis produced 16 different major SmaI pulsed-field gel electrophoresis patterns, with up to two subpatterns. Moreover, the presence of some S. aureus clones in a distinct area was observed. Although this study characterized a limited number of S. aureus isolates, the presence of classical enterotoxin genes and resistance to multiple antimicrobial agents reinforces the importance of this microorganism to animal and human health. In addition, similar genetic profiles have been identified in distinct geographic areas, suggesting clonal dissemination of S. aureus in dairy herds from southern Brazil.


2021 ◽  
Vol 181 (4) ◽  
pp. 127-135
Author(s):  
T. I. Peneva ◽  
O. A. Lyapunova

Background. The collection of durum wheat landraces (Triticum durum Desf.) at VIR contains unique material of the “Russian northern branch”, which is not found in any other collections worldwide. Studying the genetic diversity of such wheat accessions according to their gliadin bands as markers of genotypes is important for identification and conservation of their gene pool authenticity.Materials and methods. For the first time, molecular markers were used to differentiate among 38 accessions of the local durum wheat variety known under the name of “Kubanka”, collected and placed into the VIR collection in the 1910–1940s, and five accessions from the seed genebanks of the USA and Canada. Electrophoretic patterns of gliadin were used as markers of genotypes within the polymorphic cultivar. Recording bands in the form of “protein formulas” allows the researcher to evaluate the polymorphism of each accession and the diversity within the collection. Gliadin analysis was performed on single grains according to the standard method adopted at VIR and approved by ISTA.Results and conclusions. Fourteen major biotypes marked with gliadin bands were identified. Depending on the component composition of the α-zone encoded by alleles of the GLI-2A locus, biotypes were combined into 4 groups. Within the groups, biotypes are determined by alleles of the GLI-1A, GLI-1B, GLI2B loci. Genetically close monotypic accessions and polytypic ones incorporating 2 to 6 biotypes were identified. Group I is typical for the European part of Russia as well as for Kazakhstan and Kyrgyzstan. Accessions of this group can be attributed to the Volga steppe ecotype. Group II biotypes are widespread in Altai Territory, Orenburg and Astrakhan Provinces of Russia; Group III in Stavropol Territory, Russia, and Kyrgyzstan; Group IV only in Altai Territory. The greatest genetic diversity was exhibited by the ‘Kubanka’ accessions from Altai and Krasnodar Territories, and Kyrgyzstan. 


2020 ◽  
Vol 2 (1) ◽  
pp. 1
Author(s):  
Gabriella Ashari Tanudharma ◽  
Nurtjahjo Dwi Sasongko ◽  
Alice Yuniaty

Helianthus or sunflower is a genus of plant comprising about 70 species. Common sunflower and other members of Helianthae are cultivated in temperate regions and some tropical regions as food crops for humans, cattle, poultry, and as ornamental plants.  The common sunflower is valuable with respect of economic and ornamental point of view. There are many cultivars of sunflower including teddy bear, skyscraper, and lemon queen. Variation among these cultivars has been studied using molecular techniques and the result were used to develop the phylogeny among them. Random Amplified Polymorphic DNA (RAPD) is one of molecular techniques that were used for this purpose. The purpose of this study was to contruct the phylogeny of three sunflower cultivars and common sunflower based on RAPD markers. The RAPD primers used in this study were OPA-2, OPA-9, OPA-13, OPB-2, OPB-4, OPB5, OPB-7, and OPB-11. Data analysis based on molecular data showed that genetic relationship among Lemon Queen, Skyscraper, Teddy Bear and Common sunflower based on RAPD markers shows that the cultivars studied are grouped into three main groups, namely: Group I Lemon Queen and Skyscraper, Group II Teddy Bear, and Group III Common sunflower; the closest kinship is shown between Lemon Queen and Skyscraper.


Plant Disease ◽  
2004 ◽  
Vol 88 (12) ◽  
pp. 1341-1346 ◽  
Author(s):  
F. B. Iriarte ◽  
H. C. Wetzel ◽  
J. D. Fry ◽  
D. L. Martin ◽  
N. A. Tisserat

The distribution of three Ophiosphaerella spp. that cause spring dead spot (SDS) of bermudagrass was studied by sampling at 24 locations in the southeastern United States. O. korrae was isolated from 73% of the 204 bermudagrass cores collected and was the only SDS pathogen recovered at most sites. O. herpotricha was isolated at three locations in Kentucky and one in North Carolina, and O. narmari was found at two locations in North Carolina. Most O. korrae isolates collected from Alabama, Kentucky, Mississippi, Tennessee, and Virginia clustered in an amplified fragment length polymorphism group (AFLP group II) that was distinct from Kentucky bluegrass isolates collected throughout North America and similar to bermudagrass isolates from Kansas and Oklahoma (AFLP group I). A third AFLP group (III) consisting of bermudagrass isolates from Mississippi and Virginia was identified. Isolates representing AFLP groups II and III grew more rapidly on potato dextrose agar at 25 and 30°C than those in group I. O. korrae isolates differed in their aggressiveness to two bermudagrass cultivars in greenhouse studies, but these differences were not associated with AFLP group, location, or host from which the isolate was collected.


Author(s):  
K.K. SEKHRI ◽  
C.S. ALEXANDER ◽  
H.T. NAGASAWA

C57BL male mice (Jackson Lab., Bar Harbor, Maine) weighing about 18 gms were randomly divided into three groups: group I was fed sweetened liquid alcohol diet (modified Schenkl) in which 36% of the calories were derived from alcohol; group II was maintained on a similar diet but alcohol was isocalorically substituted by sucrose; group III was fed regular mouse chow ad lib for five months. Liver and heart tissues were fixed in 2.5% cacodylate buffered glutaraldehyde, post-fixed in 2% osmium tetroxide and embedded in Epon-araldite.


Author(s):  
Anton Bózner ◽  
Mikuláš Gažo ◽  
Jozef Dostál

It is anticipated that Japanese quail /Coturnix coturnix japonica/ will provide animal proteins in long term space flights. Consequently this species of birds is of research interest of international space program INTERCOSMOS. In the year 1987 we reported on an experiment /2/ in which the effect of chronic acceleration of 2 G hypergravitation, the hypodynamy and the simultaneous effect of chronic acceleration and the location in the centre of the turntable of the centrifuge on the protein fractions in skeletal muscles was studied. The ultrastructure of the heart muscle was now in this experiments examined as well.Japanese quail cockerels, aged 48 days were exposed to 2 G hypergravitation /group IV/ in a 6,4 m diameter centrifuge, to hypodynamy /group III/ and their combination /group V/, respectively for 6 days / Fig.1/. The hypodynamy in group III was achieved by suspending the birds in jackets without contact the floor. The group II was located in the centre ofthe turntable of the centrifuge. The control group I. was kept under normal conditions. The quantitative ultrastructure of myocard was evaluated by the methods of Weibel/3/ - this enables to determine the number, relative size and volume of mitochondria volume of single mitochondria, defficiency of mitochondrial cristae and volume of myofibrils.


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