scholarly journals Expression of some salt tolerance genes isolated from Egyptian gray mangrove (Avicennia marina)

2021 ◽  
Vol 53 (4) ◽  
pp. 685-696
Author(s):  
A.A. El-Atawy ◽  
M.S. Rizk ◽  
E.S. El-Demerdash ◽  
M.Z.S. Ahmed
Keyword(s):  
Salt Tolerance ◽  
Environmental Conditions ◽  
Expression Patterns ◽  
Avicennia Marina ◽  
High Light Intensity ◽  
Abiotic Factor ◽  
Low Oxygen ◽  
South Sinai ◽  
Cultivable Land ◽  
Ferritin Gene

Mangroves are well-adapted halophytes that thrive in coastal saline environments. They live under difficult environmental conditions, such as high light intensity and external salt concentrations, as well as low-oxygen environments, such as water-logged muck, that are typically inappropriate for the survival of other plants. Salinity is a major abiotic factor that affects plant growth, productivity, and dispersal in tropical and semitropical intertidal areas. Furthermore, it affects approximately 20% of all cultivable land and 50% of all irrigated land on the planet. Mangroves have developed a sophisticated salt filtration mechanism and a complicated root structure to withstand salty water exposure and tidal movement. The expression patterns of five salt tolerance genes (amFer1, amDhna, amSod1, amCat1, and amUbc2) in the Egyptian gray mangrove (Avicennia marina Forssk.) grown under different environmental conditions in South Sinai protectorates (Nabq, Ras Mohamed, Safaga, and Wadi El-Gemal), Egypt, were investigated in this study. This study aimed to assess and examine the genetic behavior of mangroves in response to salinity by using quantitative real-time PCR. Findings revealed differences in the expression patterns of the investigated genes under various conditions, showing that salinity influences plant genetic response. Ferritin gene expression was high in all locations, indicating that ferritin represents an essential component of the mangrove response mechanisms.

scholarly journals Characterization of Interactions between the Soybean Salt-Stress Responsive Membrane-Intrinsic Proteins GmPIP1 and GmPIP2

Agronomy ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1312
Author(s):  
Jia Liu ◽  
Weicong Qi ◽  
Haiying Lu ◽  
Hongbo Shao ◽  
Dayong Zhang
Keyword(s):  
Plasma Membrane ◽  
Salt Stress ◽  
Salt Tolerance ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Gene Expression Profiles ◽  
Early Gene ◽  
Plant Responses ◽  
Constitutive Overexpression ◽  
Important Trait

Salt tolerance is an important trait in soybean cultivation and breeding. Plant responses to salt stress include physiological and biochemical changes that affect the movement of water across the plasma membrane. Plasma membrane intrinsic proteins (PIPs) localize to the plasma membrane and regulate the water and solutes flow. In this study, quantitative real-time PCR and yeast two-hybridization were engaged to analyze the early gene expression profiles and interactions of a set of soybean PIPs (GmPIPs) in response to salt stress. A total of 20 GmPIPs-encoding genes had varied expression profiles after salt stress. Among them, 13 genes exhibited a downregulated expression pattern, including GmPIP1;6, the constitutive overexpression of which could improve soybean salt tolerance, and its close homologs GmPIP1;7 and 1;5. Three genes showed upregulated patterns, including the GmPIP1;6 close homolog GmPIP1;4, when four genes with earlier increased and then decreased expression patterns. GmPIP1;5 and GmPIP1;6 could both physically interact strongly with GmPIP2;2, GmPIP2;4, GmPIP2;6, GmPIP2;8, GmPIP2;9, GmPIP2;11, and GmPIP2;13. Definite interactions between GmPIP1;6 and GmPIP1;7 were detected and GmPIP2;9 performed homo-interaction. The interactions of GmPIP1;5 with GmPIP2;11 and 2;13, GmPIP1;6 with GmPIP2;9, 2;11 and GmPIP2;13, and GmPIP2;9 with itself were strengthened upon salt stress rather than osmotic stress. Taken together, we inferred that GmPIP1 type and GmPIP2 type could associate with each other to synergistically function in the plant cell; a salt-stress environment could promote part of their interactions. This result provided new clues to further understand the soybean PIP–isoform interactions, which lead to potentially functional homo- and heterotetramers for salt tolerance.

scholarly journals Transcriptomic Analysis of Betula halophila in Response to Salt Stress

2018 ◽  
Vol 19 (11) ◽  
pp. 3412 ◽  
Author(s):  
Fenjuan Shao ◽  
Lisha Zhang ◽  
Iain Wilson ◽  
Deyou Qiu
Keyword(s):  
Cell Wall ◽  
Salt Stress ◽  
Salt Tolerance ◽  
Expression Patterns ◽  
Soil Salinization ◽  
Sphingolipid Metabolism ◽  
Sequencing Platform ◽  
Resistant Varieties ◽  
High Salt Tolerance ◽  
Salt Overly Sensitive

Soil salinization is a matter of concern worldwide. It can eventually lead to the desertification of land and severely damage local agricultural production and the ecological environment. Betula halophila is a tree with high salt tolerance, so it is of importance to understand and discover the salt responsive genes of B. halophila for breeding salinity resistant varieties of trees. However, there is no report on the transcriptome in response to salt stress in B. halophila. Using Illumina sequencing platform, approximately 460 M raw reads were generated and assembled into 117,091 unigenes. Among these unigenes, 64,551 unigenes (55.12%) were annotated with gene descriptions, while the other 44.88% were unknown. 168 up-regulated genes and 351 down-regulated genes were identified, respectively. These Differentially Expressed Genes (DEGs) involved in multiple pathways including the Salt Overly Sensitive (SOS) pathway, ion transport and uptake, antioxidant enzyme, ABA signal pathway and so on. The gene ontology (GO) enrichments suggested that the DEGs were mainly involved in a plant-type cell wall organization biological process, cell wall cellular component, and structural constituent of cell wall molecular function. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment showed that the top-four enriched pathways were ‘Fatty acid elongation’, ‘Ribosome’, ‘Sphingolipid metabolism’ and ‘Flavonoid biosynthesis’. The expression patterns of sixteen DEGs were analyzed by qRT-PCR to verify the RNA-seq data. Among them, the transcription factor AT-Hook Motif Nuclear Localized gene and dehydrins might play an important role in response to salt stress in B. halophila. Our results provide an important gene resource to breed salt tolerant plants and useful information for further elucidation of the molecular mechanism of salt tolerance in B. halophila.

scholarly journals Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by <i>Emiliania huxleyi</i>

2017 ◽  
Vol 14 (24) ◽  
pp. 5693-5704 ◽  
Author(s):  
Gabriella M. Weiss ◽  
Eva Y. Pfannerstill ◽  
Stefan Schouten ◽  
Jaap S. Sinninghe Damsté ◽  
Marcel T. J. van der Meer
Keyword(s):  
Light Intensity ◽  
Environmental Conditions ◽  
Hydrogen Isotope ◽  
Isotope Fractionation ◽  
Emiliania Huxleyi ◽  
High Light Intensity ◽  
High Light ◽  
Light Conditions ◽  
Low Light ◽  
Long Chain

Abstract. Over the last decade, hydrogen isotopes of long-chain alkenones have been shown to be a promising proxy for reconstructing paleo sea surface salinity due to a strong hydrogen isotope fractionation response to salinity across different environmental conditions. However, to date, the decoupling of the effects of alkalinity and salinity, parameters that co-vary in the surface ocean, on hydrogen isotope fractionation of alkenones has not been assessed. Furthermore, as the alkenone-producing haptophyte, Emiliania huxleyi, is known to grow in large blooms under high light intensities, the effect of salinity on hydrogen isotope fractionation under these high irradiances is important to constrain before using δDC37 to reconstruct paleosalinity. Batch cultures of the marine haptophyte E. huxleyi strain CCMP 1516 were grown to investigate the hydrogen isotope fractionation response to salinity at high light intensity and independently assess the effects of salinity and alkalinity under low-light conditions. Our results suggest that alkalinity does not significantly influence hydrogen isotope fractionation of alkenones, but salinity does have a strong effect. Additionally, no significant difference was observed between the fractionation responses to salinity recorded in alkenones grown under both high- and low-light conditions. Comparison with previous studies suggests that the fractionation response to salinity in culture is similar under different environmental conditions, strengthening the use of hydrogen isotope fractionation as a paleosalinity proxy.

scholarly journals Transcriptome analysis of bread wheat leaves in response to salt stress

PLoS ONE ◽  
2021 ◽  
Vol 16 (7) ◽  
pp. e0254189
Author(s):  
Nazanin Amirbakhtiar ◽  
Ahmad Ismaili ◽  
Mohammad-Reza Ghaffari ◽  
Raheleh Mirdar Mansuri ◽  
Sepideh Sanjari ◽  
...  
Keyword(s):  
Salt Tolerance ◽  
Salinity Stress ◽  
Expression Patterns ◽  
Transcript Abundance ◽  
Crop Productivity ◽  
Mapk Signaling ◽  
Salt Tolerant ◽  
Illumina Hiseq ◽  
Phenylpropanoid Biosynthesis ◽  
Wheat Leaves

Salinity is one of the main abiotic stresses limiting crop productivity. In the current study, the transcriptome of wheat leaves in an Iranian salt-tolerant cultivar (Arg) was investigated in response to salinity stress to identify salinity stress-responsive genes and mechanisms. More than 114 million reads were generated from leaf tissues by the Illumina HiSeq 2500 platform. An amount of 81.9% to 85.7% of reads could be mapped to the wheat reference genome for different samples. The data analysis led to the identification of 98819 genes, including 26700 novel transcripts. A total of 4290 differentially expressed genes (DEGs) were recognized, comprising 2346 up-regulated genes and 1944 down-regulated genes. Clustering of the DEGs utilizing Kyoto Encyclopedia of Genes and Genomes (KEGG) indicated that transcripts associated with phenylpropanoid biosynthesis, transporters, transcription factors, hormone signal transduction, glycosyltransferases, exosome, and MAPK signaling might be involved in salt tolerance. The expression patterns of nine DEGs were investigated by quantitative real-time PCR in Arg and Moghan3 as the salt-tolerant and susceptible cultivars, respectively. The obtained results were consistent with changes in transcript abundance found by RNA-sequencing in the tolerant cultivar. The results presented here could be utilized for salt tolerance enhancement in wheat through genetic engineering or molecular breeding.

scholarly journals Experimental evolution ofCandida albicansunder hypoxia and heat shock reveals nuclear genome variants and mitochondrial methylome alterations

2017 ◽  
Author(s):  
Thais Fernanda Bartelli ◽  
Danielle do Carmo Ferreira Bruno ◽  
Flavio Lichtenstein ◽  
Marcelo R. S. Briones
Keyword(s):  
Mitochondrial Genome ◽  
Environmental Conditions ◽  
Experimental Evolution ◽  
Carbon Sources ◽  
Nuclear Genome ◽  
Low Oxygen ◽  
Physical Constraints ◽  
Genome Methylation ◽  
Copy Number Changes

ABSTRACTInfection byCandida albicansrequires its adaption to physical constraints in the human body, such as low oxygen tension (hypoxia), increased temperature (37°C) and different carbon sources. Previous studies demonstrated that the genetic variability ofC. albicansisolates is an important adaptive mechanism, although little is known about the dynamics of this genetic diversity, and the influence of these environmental conditions on its mitochondrial genome (mtDNA). To test the synergistic effect of these stress conditions onC. albicansgenome, reference strain SC5314 was subjected to anin vitroevolution scheme under hypoxia and 37°C, with two different carbon sources (glycerol and dextrose) for up to 48 weeks (approximately 4,000 generations). Experimental evolution results showed no sequence or copy number changes in the mtDNA, although sequence variants were detected on its nuclear genome by Multilocus sequence typing (MLST) and whole genome sequencing (WGS). After 12 weeks of experimental evolution, sample GTH12, grown under hypoxia at 37°C in glycerol, showed inferior growth and respiratory rates as compared to other conditions tested. Although WGS of GTH12 revealed no variants in its mtDNA, WGS with sodium bisulfite showed a significant reduction in mtDNA methylation in GTH12 in both non-coding and coding regions. Our results provide the first whole mitochondrial genome methylation map ofC. albicansand show that environmental conditions promote the selective growth of specific variants and affect the methylation patterns of the mtDNA in a strain-specific manner.

scholarly journals Identification of Raf-Like Kinases B Subfamily Genes in Gossypium Species Revealed GhRAF42 Enhanced Salt Tolerance in Cotton

2021 ◽  
Vol 22 (23) ◽  
pp. 12649
Author(s):  
Zhen Peng ◽  
Xuran Jiang ◽  
Zhenzhen Wang ◽  
Xiaoyang Wang ◽  
Hongge Li ◽  
...  
Keyword(s):  
Salt Tolerance ◽  
Gene Family ◽  
Purifying Selection ◽  
Integrated Analysis ◽  
Abiotic Factor ◽  
Virus Induced Gene Silencing ◽  
Salt Stress Response ◽  
Suitable Candidate ◽  
Duplication Events

Salinity is a critical abiotic factor that significantly reduces agricultural production. Cotton is an important fiber crop and a pioneer on saline soil, hence genetic architecture that underpins salt tolerance should be thoroughly investigated. The Raf-like kinase B-subfamily (RAF) genes were discovered to regulate the salt stress response in cotton plants. However, understanding the RAFs in cotton, such as Enhanced Disease Resistance 1 and Constitutive Triple Response 1 kinase, remains a mystery. This study obtained 29, 28, 56, and 54 RAF genes from G. arboreum, G. raimondii, G. hirsutum, and G. barbadense, respectively. The RAF gene family described allopolyploidy and hybridization events in allotetraploid cotton evolutionary connections. Ka/Ks analysis advocates that cotton evolution was subjected to an intense purifying selection of the RAF gene family. Interestingly, integrated analysis of synteny and gene collinearity suggested dispersed and segmental duplication events involved in the extension of RAFs in cotton. Transcriptome studies, functional validation, and virus-induced gene silencing on salt treatments revealed that GhRAF42 is engaged in salt tolerance in upland cotton. This research might lead to a better understanding of the role of RAFs in plants and the identification of suitable candidate salt-tolerant genes for cotton breeding.

scholarly journals Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by <i>Emiliania huxleyi</i>

2017 ◽  
Author(s):  
Gabriella M. Weiss ◽  
Eva Y. Pfannerstill ◽  
Stefan Schouten ◽  
Jaap S. Sinninghe Damsté ◽  
Marcel T. J. van der Meer
Keyword(s):  
Light Intensity ◽  
Environmental Conditions ◽  
Hydrogen Isotope ◽  
Isotope Fractionation ◽  
Emiliania Huxleyi ◽  
High Light Intensity ◽  
High Light ◽  
Sea Surface Salinity ◽  
Significant Difference ◽  
Long Chain

Abstract. Over the last decade, hydrogen isotope fractionation of long-chain alkenones have been shown to be a promising proxy for reconstructing paleo sea surface salinity due to a strong hydrogen isotope fractionation response to salinity across different environmental conditions. However, to date, the decoupling of the effects of alkalinity and salinity, parameters that co-vary in the surface ocean, on hydrogen isotope fractionation of alkenones has not been assessed. Furthermore, as the alkenone-producing haptophyte, Emiliania huxleyi, is known to grow in large blooms under high light intensities, the effect of salinity on hydrogen isotope fractionation under these high irradiances is important to constrain before using hydrogen isotope fractionation to reconstruct paleosalinity. Batch cultures of the marine haptophyte E. huxleyi strain CCMP 1516 were grown to investigate the hydrogen isotope fractionation response to salinity at high light intensity and independently assess the effects of salinity and alkalinity. Our results suggest that alkalinity does not significantly influence hydrogen isotope fractionation of alkenones, but salinity does have a strong effect. Additionally, no significant difference was observed between the fractionation responses to salinity recorded in alkenones grown under both high and low light conditions. Comparison with previous studies suggests that the fractionation response to salinity in culture is similar under different environmental conditions, strengthening the applicability of hydrogen isotope fractionation as a paleosalinity proxy.

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