Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

Lychee is an exotic tropical fruit with a distinct flavor. The genome of cultivar ‘Feizixiao’ was assembled into 15 pseudochromosomes, totaling ~470 Mb. High heterozygosity (2.27%) resulted in two complete haplotypic assemblies. A total of 13,517 allelic genes (42.4%) were differentially expressed in diverse tissues. Analyses of 72 resequenced lychee accessions revealed two independent domestication events. The extremely early maturing cultivars preferentially aligned to one haplotype were domesticated from a wild population in Yunnan, whereas the late-maturing cultivars that mapped mostly to the second haplotype were domesticated independently from a wild population in Hainan. Early maturing cultivars were probably developed in Guangdong via hybridization between extremely early maturing cultivar and late-maturing cultivar individuals. Variable deletions of a 3.7 kb region encompassed by a pair of CONSTANS-like genes probably regulate fruit maturation differences among lychee cultivars. These genomic resources provide insights into the natural history of lychee domestication and will accelerate the improvement of lychee and related crops.

Initiation of organ maturation and fruit ripening in grapevine is controlled by the CARPO-NAC transcription factor

Grapevine is a woody temperate perennial plant and one of the most important fruit crops with global relevance in both the fresh fruit and winemaking industries. Unfortunately, global warming is affecting viticulture by altering developmental transitions and fruit maturation processes. In this context, uncovering the molecular mechanisms controlling the onset and progression of ripening could prove essential to maintain high-quality grapes and wines. Through a deep inspection of previously published transcriptomic data we identified the NAC family member VviCARPO (Controlled Adjustment of Ripening and maturation of Plant Organs) as a key regulator of grapevine maturation whose induction precedes the expression of well-known ripening associated genes. We explored VviCARPO binding landscapes through DAP-seq and overlapped its bound genes with transcriptomics datasets from stable and transient VviCARPO overexpressing grapevine plants to define a set of high-confidence targets. Among these, we identified key molecular ripening markers. Physiological, metabolic and promoter activation analyses showed that VviCARPO induces chlorophyll degradation and anthocyanin accumulation through the up-regulation of VviSGR1 and VviMYBA1, respectively, with the latter being up-regulated through a VviCARPO-VviNAC03 regulatory complex. Despite showing a closer phylogenetic relationship to senescent-related AtNAP homologues, VviCARPO complemented the nor mutant phenotype in tomato, suggesting it may have acquired a dual role as an orchestrator of both ripening- and senescence-related processes. Our data supports CARPO as a master regulator of the grapevine vegetative-to-mature phase organ transition and therefore an essential target for insuring fruit quality and environmental resilience.

Regulation of Tocopherol Biosynthesis During Fruit Maturation of Different Citrus Species

Tocopherols are plant-derived isoprenoids with vitamin E activity, which are involved in diverse physiological processes in plants. Although their biosynthesis has been extensively investigated in model plants, their synthesis in important fruit crops as Citrus has scarcely been studied. Therefore, the aim of this work was to initiate a physiological and molecular characterization of tocopherol synthesis and accumulation in Citrus fruits during maturation. For that purpose, we selected fruit of the four main commercial species: grapefruit (Citrus paradisi), lemon (Citrus limon), sweet orange (Citrus sinensis), and mandarin (Citrus clementina), and analyzed tocopherol content and the expression profile of 14 genes involved in tocopherol synthesis during fruit maturation in both the flavedo and pulp. The selected genes covered the pathways supplying the tocopherol precursors homogentisate (HGA) (TAT1 and HPPD) and phytyl pyrophosphate (PPP) (VTE5, VTE6, DXS1 and 2, GGPPS1 and 6, and GGDR) and the tocopherol-core pathway (VTE2, VTE3a, VTE3b, VTE1, and VTE4). Tocopherols accumulated mainly as α- and γ-tocopherol, and α-tocopherol was the predominant form in both tissues. Moreover, differences were detected between tissues, among maturation stages and genotypes. Contents were higher in the flavedo than in the pulp during maturation, and while they increased in the flavedo they decreased or were maintained in the pulp. Among genotypes, mature fruit of lemon accumulated the highest tocopherol content in both the flavedo and the pulp, whereas mandarin fruit accumulated the lowest concentrations, and grapefruit and orange had intermediate levels. Higher concentrations in the flavedo were associated with a higher expression of all the genes evaluated, and different genes are suitable candidates to explain the temporal changes in each tissue: (1) in the flavedo, the increase in tocopherols was concomitant with the up-regulation of TAT1 and VTE4, involved in the supply of HGA and the shift of γ- into α-tocopherol, respectively; and (2) in the pulp, changes paralleled the expression of VTE6, DXS2, and GGDR, which regulate PPP availability. Also, certain genes (i.e., VTE6, DXS2, and GGDR) were co-regulated and shared a similar pattern during maturation in both tissues, suggesting they are developmentally modulated.

Continuous Monitoring of Olive Fruit Growth by Automatic Extensimeter in Response to Vapor Pressure Deficit from Pit Hardening to Harvest

Recently, several studies on olive fruit growth have focused on circadian monitoring as an important orchard management tool. The olive fruit growth trend is described by double sigmoid model with four growth phases, where the third phase spans from the end of pit hardening to initial fruit maturation, and the last phase includes olive maturation up to fruit drop. Environmental factors play an important role in fruit growth, with vapor pressure deficit (VPD) being a keystone factor. Our experiment was designed to hourly monitor olive (Olea europaea L. cv. ‘Frantoio’) fruit transversal diameter from approximately initial pit hardening (II Phase), extension (III Phase) until harvest time (IV Phase) in the attempt to determine whether fruit growth dynamically responds to environmental variables such as diurnal VPD change in different stages of fruit development. Automatic extensimeters were applied in open field and VPD was calculated from data of our weather station. Throughout the experiment period, the circadian model of fruit growth showed two steps: shrinkage and expansion. Almost in all days of the third phase of fruit growth, daily response of transversal diameter to VPD formed complete clockwise hysteresis loops. During the fourth phase of fruit growth, with increasing fruit maturation, the complete clockwise hysteresis loop experienced some abnormality. At the fourth stage of fruit growth there were incomplete and partial clockwise hysteresis loops. We conclude that hysteresis can be employed to detect the shift between the end of the third phase (cell expansion) and the beginning of the fourth phase (fruit maturation) of fruit growth. The disappearance of the complete clockwise hysteresis loop and the substitution with incomplete, or partial clockwise hysteresis loops was observable only in the fourth stage of fruit growth. These results can be valuable for any smart fruit management of olive fruit production.

Correlating light absorbance parameters in peach skin with susceptibility to streaking and association with rainwater components

Since first observed in 2003, peach skin streaking (PSS) has increasingly affected fruit production in the Southeast. Since 2017 we have documented the occurrence of peach skin streaking on 21 cultivars in South Carolina and symptoms have also been reported in Maryland and Pennsylvania. PSS seems to be linked to an unidentified causal agent mediated in rainwater with susceptibility closely related to the ripening status of maturing fruit. Over the course of the 2019 peach growing season, we collected rainwater at a South Carolina peach farm with a history of PSS and analyzed samples for chemical and physical property. Five cultivars were monitored for occurrence of PSS to associate specific rain events with symptom development in the field. PSS was observed in the field on one of the monitored and three additional cultivars between May and June, and five rain events coincided in time with symptom development. However, chemical, and physical properties from these rainwater samples were not significantly different from samples not associated with PSS in that time frame. Fruit of the five cultivars were also collected at 21, 14, 7 and 0 days before harvest, to determine light absorbance parameters, ΔA and color space, and to induce symptoms under laboratory conditions by treatment with ClO2. There were significant correlations between symptom development and light absorbance parameters illustrating how proneness to PSS increases during fruit maturation.

QUANTUM YIELD, PHOTOSYNTHETIC PIGMENTS AND BIOMASS OF MINIWATERMELON UNDER IRRIGATION STRATEGIES AND POTASSIUM1

ABSTRACT This study was conducted with the objective of evaluating the quantum yield, photosynthetic pigments and biomass accumulation of mini watermelon cv. Sugar Baby, under strategies of irrigation with saline water and potassium fertilization. The experiment was conducted in a randomized block design, in a 8 × 3 factorial scheme, with three replicates, corresponding to eight strategies of irrigation with saline water applied at different phenological stages of the crop (control - irrigation with low-salinity water throughout the crop cycle, and salt stress in the vegetative, vegetative/flowering, flowering, flowering/fruiting, fruiting, fruiting/ fruit maturation and fruit maturation stage) and three potassium doses (50, 100 and 150% of the recommendation). The dose of 100% corresponded to 150 mg of K2O kg-1 of soil. Two levels of electrical conductivity of water were used: 0.8 and 4.0 dS m-1. Irrigation with water of 4.0 dS m-1 continuously in the vegetative and flowering stages increased the initial fluorescence and decreased the quantum efficiency of photosystem II of mini watermelon fertilized with 100 and 150% of K recommendation. Fertilization with 50% recommendation did not interfere in the fluorescence parameters of the mini watermelon, regardless of the irrigation management strategy. Chlorophyll a synthesis is inhibited by salt stress in the vegetative/flowering, flowering, flowering/fruiting, fruiting/maturation stages, as well as for total chlorophyll, except for the flowering stage. Application of 4.0 dS m-1 water in the flowering, fruiting/maturation and maturation stages promoted greater biomass accumulation in mini watermelon.

Exogenous Calcium Delays Grape Berry Maturation in the White cv. Loureiro While Increasing Fruit Firmness and Flavonol Content

Vineyard calcium (Ca) sprays have been increasingly used by grape growers to improve fruit firmness and thus maintain quality, particularly in periods of heavy rains and hail. The observation that Ca visibly modified berry size, texture, and color in the most prominent white cultivar of the DOC region ‘Vinhos Verdes’, cultivar (cv.) Loureiro, led us to hypothesize that Ca induced metabolic rearrangements that resulted in a substantial delay in fruit maturation. Targeted metabolomics by ultra-performance liquid chromatography coupled to mass spectrometry and directed transcriptomics were thus combined to characterize the metabolic and transcriptional profiles of cv. Loureiro berries that, together with firmness, °Brix, and fruit weight measurements, allowed to obtain an integrated picture of the biochemical and structural effects of Ca in this cultivar. Results showed that exogenous Ca decreased amino acid levels in ripe berries while upregulating PAL1 expression, and stimulated the accumulation of caftaric, coutaric, and fertaric acids. An increase in the levels of specific stilbenoids, namely E-piceid and E-ω-viniferin, was observed, which correlated with the upregulation of STS expression. Trace amounts of anthocyanins were detected in berries of this white cultivar, but Ca treatment further inhibited their accumulation. The increased berry flavonol content upon Ca treatment confirmed that Ca delays the maturation process, which was further supported by an increase in fruit firmness and decrease in weight and °Brix at harvest. This newly reported effect may be specific to white cultivars, a topic that deserves further investigation.

Expression analysis of MYB genes in different apple cultivars with distinct coloration pattern during fruit maturation

Anthocyanins are water-soluble pigments responsible for red, pink, purple or blue coloration in the flesh and/or skin of apple fruit. Since consumers prefer anthocyanin rich fruits due to their health benefits, anthocyanin content is an important trait for marketability of apples. Synthesis and accumulation of anthocyanins are controlled by environmental and genetic factors such as transcription factors (TFs). Two-repeat (R2R3) MYB TFs are involved in the regulation of anthocyanin biosynthesis in plants. In this study, the expression of the MdMYBA and MdMYB3 genes encoding R2R3 type MYB TFs were analyzed in apple cultivars with fruit skin color from green to dark red at different growth stages. Fruit samples were collected from “Scarlet Spur”, “Galaxy Gala”, Golden Delicious” “Granny Smith” apple cultivars with dark red, light red, yellow and green fruits, respectively, at four different time periods after full-bloom. Total RNA was isolated from the peel of the collected fruits and the expression of the MdMYBA and MdMYB3 genes was analyzed by real-time RT-PCR. The expression of the MdMYBA gene started to increase at 92 DAFB and thereafter in red-skin apples; however, no expression was observed at any time points in yellow or green-skin apple cultivars. On the other hand, the MdMYB3 gene was expressed in red-skin and yellow-skin apple cultivars starting at 55 DAFB, but no expression was observed in green apple cultivar at any time of fruit maturation. The expression levels of the MdMYBA and MdMYB3 genes varied in apple fruits with different skin coloration indicating that they play a role regulation of the anthocyanin biosynthesis in apple cultivars during fruit maturation.