Isolation, Serovar Identification, and Antimicrobial Susceptibility of Avibacterium paragallinarum from Chickens in China from 2019 to 2020

Infectious coryza is an acute infectious respiratory disease in chickens that is caused by Avibacterium paragallinarum (A. paragallinarum). Infectious coryza has major economic effects due to decreased egg production in growing birds and slowed growth in broilers. In this study, we isolated and identified 40 strains of A. paragallinarum from chickens that showed typical clinical signs of coryza in part of China from 2019 to 2020. Using a hemagglutination-inhibition test, 11 isolates were identified as serovar A, 10 isolates were identified as serovar B, and 19 isolates were identified as serovar C. Antimicrobial sensitivity tests showed that high minimum inhibitory concentration (MIC) values were encountered for compounds sulfamethoxine sodium and oxytetracycline hydrochloride. Especially, of the 40 A. paragallinarum isolates, 30% had an MIC value of compound sulfamethoxine sodium of 64 μg/mL, 10% of 128 μg/mL, and 15% of 256 μg/mL. For oxytetracycline hydrochloride, 85% of isolates showed MIC values of 64 μg/mL or more. Excitingly, the MIC values of β-lactamase (amoxicillin, ampicillin, and ceftiofur) were low, with 77.5%, 70%, and 92.5% of isolates having an MIC value of ≤1 μg/mL, respectively. Our results may provide a reference for the treatment of infectious coryza.

Modelling SO₂ conversion into sulphates in the mid-troposphere with a 3D chemistry-transport model: the case of Mount Etna's eruption on April 12, 2012

Volcanic activity is an important source of atmospheric sulphur dioxide (SO2), which, after conversion into sulphuric acid, induces impacts on, among others, rain acidity, human health, meteorology and the radiative balance of the atmosphere. This work focuses on the conversion of SO2 into sulphates (, S(+VI)) in the mid-tropospheric volcanic plume emitted by the explosive eruption of Mount Etna (Italy) on Apr. 12, 2012, using the CHIMERE chemistry-transport model. Since volcanic plume location and composition depend on several often poorly constrained parameters, using a chemistry-transport model allows us to study the sensitivity of SO2 oxidation to multiple aspects such as volcanic water emissions, transition metal emissions, plume diffusion and plume altitude. Our results show that in the mid-troposphere, two pathways contribute to sulphate production, the oxidation of SO2 by OH in the gaseous phase (70 %), and the aqueous oxidation by O2 catalyzed by Mn2+ and Fe3+ ions (25 %). The oxidation in aqueous phase is the faster process, but in the mid-troposphere, liquid water is scarce, therefore the relative share of gaseous oxidation can be important. After one day in the mid-troposphere, about 0.5 % of the volcanic SO2 was converted to sulphates through the gaseous process. Because of the nonlinear dependency of the kinetics in the aqueous phase to the amount of volcanic water emitted and on the availability of transition metals in the aqueous phase, several experiments have been designed to determine the prominence of different parameters. Our simulations show that during the short time that liquid water remains in the plume, around 0.4 % of sulphates manage to quickly enter the liquid phase. Sensitivity tests regarding the advection scheme have shown that this scheme must be chosen wisely, as dispersion will impact both oxidation pathways explained above.

The influence of multiple groups of biological ice nucleating particles on microphysical properties of mixed-phase clouds observed during MC3E

A new empirical parameterization (EP) for multiple groups of primary biological aerosol particles (PBAPs) is implemented in the aerosol cloud model (AC) to investigate their roles as ice-nucleating particles (INPs). The EP describes the heterogeneous ice nucleation by (1) fungal spores, (2) bacteria, (3) pollen, (4) detritus of plants, animals, and viruses, and (5) algae. Each group includes fragments from the originally emitted particles. A high-resolution simulation of a midlatitude mesoscale squall line by AC is validated against airborne and ground observations. Sensitivity tests are carried out by varying the initial vertical profiles of the loadings of individual PBAP groups. The resulting changes in warm and ice microphysical parameters are investigated. Overall, PBAPs have little effect on the ice phase, especially in the convective region. In the stratiform region, increasing the initial PBAP loadings by a factor of 100 resulted in less than 60 % change in ice number concentrations. The total ice concentration is mostly controlled by various mechanisms of secondary ice production (SIP). However, when SIP is artificially prohibited in sensitivity tests, increasing the PBAP loading by a factor of 100 has no significant effect on the ice phase. Further sensitivity tests revealed that PBAPs have little effect on surface precipitation as well as on shortwave and longwave flux.

Estimating the impact of a new bridge over the river Danube

The impact of a new bridge over the Danube was estimated using a 3-step road transport model, as at the time no multimodal model was available. Different forecasts have been considered for both scenarios without the project and with the project. Also, sensitivity tests have been carried out in order to assess the impact of various bridge tolls. At the end, time savings and emissions have been estimated.

Evolution and emergence: higher order information structure in protein interactomes across the tree of life

The internal workings of biological systems are notoriously difficult to understand. Due to the prevalence of noise and degeneracy in evolved systems, in many cases the workings of everything from gene regulatory networks to protein–protein interactome networks remain black boxes. One consequence of this black-box nature is that it is unclear at which scale to analyze biological systems to best understand their function. We analyzed the protein interactomes of over 1800 species, containing in total 8 782 166 protein–protein interactions, at different scales. We show the emergence of higher order ‘macroscales’ in these interactomes and that these biological macroscales are associated with lower noise and degeneracy and therefore lower uncertainty. Moreover, the nodes in the interactomes that make up the macroscale are more resilient compared with nodes that do not participate in the macroscale. These effects are more pronounced in interactomes of eukaryota, as compared with prokaryota; these results hold even after sensitivity tests where we recalculate the emergent macroscales under network simulations where we add different edge weights to the interactomes. This points to plausible evolutionary adaptation for macroscales: biological networks evolve informative macroscales to gain benefits of both being uncertain at lower scales to boost their resilience, and also being ‘certain’ at higher scales to increase their effectiveness at information transmission. Our work explains some of the difficulty in understanding the workings of biological networks, since they are often most informative at a hidden higher scale, and demonstrates the tools to make these informative higher scales explicit.

Prescription Pattern of Antimicrobial Agents in Various Dental Clinics at Malabar Region of Kerala, South India

Antimicrobial agents (AMAs) are among the most commonly prescribed drugs in dental practice. However inappropriate prescribing and irrational use of antimicrobial agents without prior culture and sensitivity tests, inadequate duration, dosing etc. have been identified as major factors contributing to the emergence of antibiotic resistance, which is an ongoing challenge in all over the world. A total of 1900 patients were screened and out of which 1748 patients were selected based on the inclusion and exclusion criteria for the study after taking consent. This study shows that the majority of patients attended in these clinics were female, 1020 (58.35%) and majority of patients (717) comes under age group 21-40 (41.02%) followed by age group by ≤ 20 (32.43%). This study established that most commonly recommended antimicrobial agents were amoxicillin, followed by amoxicillin-clavulanate and metronidazole. The antimicrobial agents like Ciprofloxacin, Cefixime, Tetracyclines, Azithromycines were also used but in less extent. This study also revealed that the selection of antimicrobials was not confirmed with culture and sensitivity tests in all cases, which may negatively influence bacterial resistance profile.

Automated temporal tracking of coherently evolving density fronts in numerical models

Oceanic density fronts can evolve, be advected, or propagate as gravity currents. Frontal evolution studies require methods to temporally track evolving density fronts. We present an automated method to temporally track these fronts from numerical model solutions. First, at all time steps contiguous density fronts are detected using an edge detection algorithm. A front event, defined as a set of sequential-in-time fronts representing a single time-evolving front, is then identified. At time step i, a front is compared to each front at time step i + 1 to determine if the two fronts are matched. An i front grid point is trackable if the minimum distance to the i + 1 front falls within a range. The i front is forward-matched to the i + 1 front when a sufficient number of grid points are trackable and the front moves onshore. A front event is obtained via forward tracking a front for multiple time steps. Within an event, the times that a grid point can be tracked is its connectivity and a pruning algorithm using a connectivity cutoff is applied to extract only the coherently evolving components. This tracking method is applied to a realistic 3-month San Diego Bight model solution yielding 81 front events with duration ≥ 7 hours, allowing analyses of front event properties including occurrence frequency and propagation velocity. Sensitivity tests for the method’s parameters support that this method can be straightforwardly adapted to track evolving fronts of many types in other regions from both models and observations.

Ground-based validation of the MetopA and B GOME-2 OClO measurements

This paper reports on ground-based validation of the atmospheric OClO data record produced in the framework of EUMETSAT’s Satellite Application Facility on Atmospheric Chemistry Monitoring (AC SAF) using the GOME2-A and -B instruments over the 2007–2016 and 2013–2016 periods, respectively. OClO slant column densities are compared to correlative measurements collected from 9 NDACC Zenith-Scattered-Light DOAS (ZSL-DOAS) instruments distributed in both the Arctic and Antarctic. Sensitivity tests are performed on the ground-based data to estimate the impact of the different OClO DOAS analysis settings. On this basis, we infer systematic uncertainties of about 25 % between the different ground-based data analysis, reaching total uncertainties ranging from about 26 % to 33 % for the different stations. Time-series at the different sites show good agreement between satellite and ground-based data, both for the inter-annual variability and the overall OClO seasonal behavior. GOME-2A results are found to be nosier than those of GOME-2B, especially after 2011, probably due to instrumental degradation effects. Daily linear regression analysis for OClO activated periods yield correlation coefficients of 0.8 for GOME-2A and 0.87 for GOME-2B, with slopes of 0.64 and 0.72, respectively. Biases are within 8 x 1013 molec/cm2 with some differences between GOME-2A and GOME-2B, depending on the station. Overall, considering all the stations, a median bias of about −2.2 x 1013 molec/cm2 is found for both GOME-2 instruments.

A numerical study of the response of tropical Pacific SST to atmospheric forcing

Two sets of atmospheric forcing from NCEP/NCAR 40-year reanalysis project, one based on monthly averaged climatological data and the other on 1982-83 monthly averaged data, are used to derive the global Miami Isopycnic Coordinate Ocean Model (MICOM). These two runs are referred to as the climatological experiments and 1982-83 El Nino experiments. Sensitivity tests of tropical Pacific SST to different bulk parameterizations of air-sea heat and momentum fluxes are carried out in the two experiments. Primary results show that constant transfer coefficients (1.2 × 10-3) for heat flux greatly overestimate the tropical Pacific SST, whereas the Liu-Katsaros-Businger (Liu et al. 1979) method can significantly improve the SST simulation especially under very low-wind speed conditions. On the other hand, Large and Pond (1982) formulation of the drag coefficient made little difference on the tropical Pacific SST simulation although it might modify the surface ocean circulation. The SST seasonal cycle and interannual variability of tropical Pacific SST are also examined in this study. Since SST is the most important oceanic parameter that provides the link between the atmosphere and the ocean, this evaluation of different parameterization schemes may facilitate future studies on coupling ocean-atmospheric numeric models.

Comparison of CSV-1000 and Metrovision contrast sensitivity tests in normal eyes

Background: Measuring contrast sensitivity (CS) allows a better understanding of the visual performance of the human eye. This study aimed to examine the correlation and agreement between the results of two sinewave grating-based CS measurement methods, Metrovision and CSV-1000, in normal eyes. Methods: This cross-sectional, comparative study was performed between December 2018 and April 2019, at an optometry clinic. Subjects underwent comprehensive ocular examinations, which included pupil reflexes, subjective refraction, external eye examinations, smooth pursuit eye movement assessment, the cover–uncover test, and detailed slit-lamp examination of the anterior and posterior segments. Metrovision and CSV-1000 were employed to assess CS under photopic conditions. The correlation and agreement of the results of the two tests were evaluated. Results: CS was measured for 104 normal eyes for 3, 6, 12, and 18 cycles per degree (cpd) spatial frequencies (participants’ mean age ± standard deviation: 37.3 ± 26.4 years). The CSV-1000 measurements were significantly higher for the 3 and 6 cpd spatial frequencies (both P = 0.01); however, at higher spatial frequencies, CS scores were similar. The highest and lowest differences between the two tests were recorded for the 3 cpd spatial frequency and 18 cpd spatial frequency, respectively. Except for the 3 cpd spatial frequency, in both eyes, the findings correlated significantly between the CSV-1000 and Metrovision (P < 0.05). The narrowest and widest limits of agreement between the two tests were found for the 12 and 3 cpd spatial frequencies, respectively. Conclusions: The CSV-1000 method estimated CS higher than the Metrovision method, mostly at lower spatial frequencies. Furthermore, the agreement between the two methods was greater at higher spatial frequencies than at lower frequencies. This should be kept in mind when using the two methods interchangeably in visual screening.