Morphological and molecular evidence supports the recognition of a new subspecies of the critically endangered Pityrodia scabra (Lamiaceae)

2013 ◽  
Vol 26 (1) ◽  
pp. 1 ◽  
Author(s):  
Kelly A. Shepherd ◽  
Andrew Perkins ◽  
Joel Collins ◽  
Margaret Byrne ◽  
Kevin R. Thiele
Keyword(s):  
Phylogenetic Analyses ◽  
Critically Endangered ◽  
Morphological Data ◽  
Molecular Evidence ◽  
Isolated Populations ◽  
Genetic Structuring ◽  
New Subspecies ◽  
Disjunct Populations ◽  
Cryptic Taxa ◽  
Western Australian

Taxonomic delineation of closely related taxa can be difficult, particularly in regions such as southern Western Australia where a highly diverse flora exhibits complex patterns of subtle morphological variation and genetic structuring and where some taxa have highly disjunct populations. A combined approach utilising highly variable, non-coding chloroplast gene regions and morphological data is used here to help delimit cryptic taxa in the rare Western Australian species Pityrodia scabra A.S.George. The species comprises disjunct populations over 400 km of the Western Australian wheatbelt from near Wyalkatchem, Southern Cross and Lake Lefroy. Morphological features such as leaf phyllotaxy, calyx size and indumentum vary among the populations and provide some evidence for cryptic taxa. Phylogenetic analyses based on cpDNA psbA–trnH and psbD–trnT and nuclear external transcribed spacer (ETS) sequences revealed genetic distinctiveness between the Wyalkatchem (type) population and the Southern Cross and Lake Lefroy populations. This evidence, when used in conjunction with the morphological differences, provides support for the recognition of the new subspecies described herein as Pityrodia scabra subsp. dendrotricha K.A.Sheph. subsp. nov. This new subspecies is of conservation concern because it is currently known only from a few, isolated populations; the typical subspecies remains Critically Endangered because it comprises one extant population. A description of both subspecies, a key and images are provided.

Taxonomy and phylogeny of Nitella (Charophyceae, Characeae) from Brazil with emphasis on the midwest and southeast regions

Phytotaxa ◽  
2018 ◽  
Vol 356 (3) ◽  
pp. 181
Author(s):  
FABIO RENATO BORGES ◽  
ORLANDO NECCHI JR
Keyword(s):  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Molecular Evidence ◽  
Type Specimens ◽  
Brazilian Studies ◽  
Two Populations ◽  
Section Level

The genus Nitella is the most species-rich within the Charales. Brazilian studies on the genus are relatively scarce and consist of floristic surveys, lacking modern and more precise information. This investigation applied scanning electron microscopy to analyze the oospore wall and molecular data associated with traditional morphological characters to analyze forty-two populations of Nitella from the midwest and southeast regions of Brazil. Forty-two new sequences of rbcL, twelve of ITS1 and twenty-three of ITS2 were generated for the five species recognized in this study: Nitella acuminata A. Braun ex Wallman, Nitella axillaris A. Braun, Nitella elegans B. P. Pal, Nitella flagellifera J. Groves & G. O. Allen and Nitella microcarpa A. Braun.. Phylogenetic analyses of sequences of these three markers were congruent in that they grouped our species with others from different countries to form five clades. Our results on ultrastrucure of the oospore wall were consistent with previous studies for the same species from other regions of the world. The data reinforced the conclusion that the use of ornamentation of oospore wall may be extremely useful for the construction of a natural system for Characeae at section level. Molecular evidence, reinforced by morphological data, for the Brazilian material analyzed suggests that Nitella subglomerata A. Braun and Nitella gollmeriana A. Braun could be synonymys of Nitella acuminata; and Nitella axilliformis K. Imahori appears to be the same as Nitella axillaris. However, no formal proposition was made considering that type specimens were not analyzed and these observations were based on a relatively small number of samples strictly from Brazil. We showed that even among geographically distant populations, such as from other continents, of some Nitella species, the degree of identity among DNA sequences was high.

scholarly journals Eight in One: Hidden Diversity of the Bagrid Catfish Tachysurus albomarginatus s.l. (Rendhal, 1928) Widespread in Lowlands of South China

2021 ◽  
Vol 12 ◽  
Author(s):  
Wei-Han Shao ◽  
Jian-Li Cheng ◽  
E Zhang
Keyword(s):  
Species Diversity ◽  
South China ◽  
Phylogenetic Analyses ◽  
Divergence Time ◽  
Morphological Data ◽  
Conservation Strategies ◽  
Molecular Evidence ◽  
Putative Species ◽  
Molecular Phylogenetic ◽  
Geographic Populations

There is increasing evidence that species diversity is underestimated in the current taxonomy of widespread freshwater fishes. The bagrid species T. albomarginatus s.l. is mainly distributed in the lowlands of South China, as currently identified. A total of 40 localities (including the type locality), which covers most of its known range, were sampled. Molecular phylogenetic analyses based on concatenated mtDNA and nuclear genes recover nine highly supported lineages clustering into eight geographic populations. The integration of molecular evidence, morphological data, and geographic distribution demonstrates the delineation of T. albomarginatus s.l. as eight putative species. Four species, namely, T. albomarginatus, T. lani, T. analis, and T. zhangfei sp. nov. and the T. similis complex are taxonomically recognized herein. Moreover, T. zhangfei sp. nov. comprises two genetically distinct lineages with no morphological and geographical difference. This study also reveals aspects of estimation of divergence time, distribution, and ecological adaption within the T. albomarginatus group. The unraveling of the hidden species diversity of this lowland bagrid fish highlights the need for not only the molecular scrutiny of widely distributed species of South China but also the adjustment of current biodiversity conservation strategies to protect the largely overlooked diversity of fishes from low-elevation rapids.

scholarly journals An integrative taxonomic revision of slug-eating snakes (Squamata: Pareidae: Pareineae) reveals unprecedented diversity in Indochina

PeerJ ◽  
2022 ◽  
Vol 10 ◽  
pp. e12713
Author(s):  
Nikolay A. Poyarkov ◽  
Tan Van Nguyen ◽  
Parinya Pawangkhanant ◽  
Platon V. Yushchenko ◽  
Peter Brakels ◽  
...  
Keyword(s):  
Middle Eocene ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distribution Patterns ◽  
Morphological Data ◽  
New Subspecies ◽  
Early Oligocene ◽  
Conservation Actions ◽  
Colonization Hypothesis ◽  
High Level

Slug-eating snakes of the subfamily Pareinae are an insufficiently studied group of snakes specialized in feeding on terrestrial mollusks. Currently Pareinae encompass three genera with 34 species distributed across the Oriental biogeographic region. Despite the recent significant progress in understanding of Pareinae diversity, the subfamily remains taxonomically challenging. Here we present an updated phylogeny of the subfamily with a comprehensive taxon sampling including 30 currently recognized Pareinae species and several previously unknown candidate species and lineages. Phylogenetic analyses of mtDNA and nuDNA data supported the monophyly of the three genera Asthenodipsas, Aplopeltura, and Pareas. Within both Asthenodipsas and Pareas our analyses recovered deep differentiation with each genus being represented by two morphologically diagnosable clades, which we treat as subgenera. We further apply an integrative taxonomic approach, including analyses of molecular and morphological data, along with examination of available type materials, to address the longstanding taxonomic questions of the subgenus Pareas, and reveal the high level of hidden diversity of these snakes in Indochina. We restrict the distribution of P. carinatus to southern Southeast Asia, and recognize two subspecies within it, including one new subspecies proposed for the populations from Thailand and Myanmar. We further revalidate P. berdmorei, synonymize P. menglaensis with P. berdmorei, and recognize three subspecies within this taxon, including the new subspecies erected for the populations from Laos and Vietnam. Furthermore, we describe two new species of Pareas from Vietnam: one belonging to the P. carinatus group from southern Vietnam, and a new member of the P. nuchalis group from the central Vietnam. We provide new data on P. temporalis, and report on a significant range extension for P. nuchalis. Our phylogeny, along with molecular clock and ancestral area analyses, reveal a complex diversification pattern of Pareinae involving a high degree of sympatry of widespread and endemic species. Our analyses support the “upstream” colonization hypothesis and, thus, the Pareinae appears to have originated in Sundaland during the middle Eocene and then colonized mainland Asia in early Oligocene. Sundaland and Eastern Indochina appear to have played the key roles as the centers of Pareinae diversification. Our results reveal that both vicariance and dispersal are responsible for current distribution patterns of Pareinae, with tectonic movements, orogeny and paleoclimatic shifts being the probable drivers of diversification. Our study brings the total number of Pareidae species to 41 and further highlights the importance of comprehensive taxonomic revisions not only for the better understanding of biodiversity and its evolution, but also for the elaboration of adequate conservation actions.

scholarly journals A new subspecies of Batagur affinis (Cantor, 1847), one of the world’s most critically endangered chelonians (Testudines: Geoemydidae)

Zootaxa ◽  
2009 ◽  
Vol 2233 (1) ◽  
pp. 57-68 ◽  
Author(s):  
PETER PRASCHAG ◽  
ROHAN HOLLOWAY ◽  
ARTHUR GEORGES ◽  
MARTIN PÄCKERT ◽  
ANNA K. HUNDSDÖRFER ◽  
...  
Keyword(s):  
Large Scale ◽  
Nuclear Dna ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Critically Endangered ◽  
Malay Peninsula ◽  
New Subspecies ◽  
Haplotype Networks ◽  
Mitochondrial Cytochrome B ◽  
Relic Population

Estuarine Batagur are among the most critically endangered chelonian species. We assess the taxonomic status of the recently discovered Cambodian relic population of Batagur by phylogenetic analyses of three mitochondrial (2096 bp) and three nuclear DNA fragments (1909 bp) using sequences from all other Batagur species and selected allied geoemydids. Furthermore, we calculated haplotype networks of the mitochondrial cytochrome b gene for Cambodian terrapins, B. affinis, B. baska, and B. kachuga and compare external morphology of estuarine Batagur populations. Genetically, Cambodian Batagur are closely related with, but distinct from B. affinis from Sumatra and the west coast of the Malay Peninsula. Morphologically, Cambodian Batagur resemble the distinctive B. affinis populations from the eastern Malay Peninsula that were not available for genetic study. We suggest that the Batagur populations from the eastern Malay Peninsula and Cambodia represent a new subspecies of B. affinis that once was distributed in estuaries surrounding the Gulf of Thailand (Batagur affinis edwardmolli subsp. nov.). Its patchy extant distribution is most probably the result of large-scale habitat alteration and century-long overexploitation. In addition, our phylogenetic analyses suggest repeated switches between riverine and estuarine habitats during the evolution of the extant Batagur species.

Systematics of the Apteropanorpidae (Insecta : Mecoptera) based on morphological and molecular evidence

2007 ◽  
Vol 21 (6) ◽  
pp. 589 ◽  
Author(s):  
Christopher M. Palmer ◽  
John W. H. Trueman ◽  
David K. Yeates
Keyword(s):  
Phylogenetic Analyses ◽  
Morphological Data ◽  
Molecular Evidence ◽  
Glacial History ◽  
Key To Species ◽  
Field Surveys ◽  
The Family ◽  
New Localities ◽  
History Of ◽  
Cladistic Analyses

Apteropanorpa Carpenter, 1941 is a genus of scorpionflies endemic to Tasmania. The genus comprised two described species before the current study. However, many anecdotal reports suggested that Apteropanorpa was more widespread in Tasmania than had previously been thought, and that more species awaited discovery and description. Intensive field surveys for the Apteropanorpidae were conducted from 2001 to 2003 in a range of altitudes and habitats all over Tasmania. These surveys yielded a large number of adult specimens, collected at many new localities and at a range of elevations. Cladistic analyses of COI molecular and morphological data were congruent in their inferred species composition of the family. Phylogenetic analyses with evaluation of species concepts provided evidence for two new species: Apteropanorpa warra, sp. nov. and A. hartzi, sp. nov. The distribution of the Apteropanorpidae is much more extensive than was previously thought; many populations discovered as part of this research represent extensions of the known ranges of A. evansi Byers & Yeates and A. tasmanica Carpenter. A key to species is presented. The altitudinal range of each species is closely associated with the local climatic treeline. Hypotheses concerning the biogeography of the family are consistent with the glacial history of Tasmania.

scholarly journals Genome-wide SNPs redefines species boundaries and conservation units in the freshwater mussel genus Cyprogenia of North America

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kyung Seok Kim ◽  
Kevin J. Roe
Keyword(s):  
Phylogenetic Analyses ◽  
Freshwater Mussel ◽  
Conservation Strategies ◽  
Nucleotide Polymorphisms ◽  
Conservation Units ◽  
Genetic Structuring ◽  
The North ◽  
Snp Data ◽  
Genome Wide ◽  
Significant Difference

AbstractDetailed information on species delineation and population genetic structure is a prerequisite for designing effective restoration and conservation strategies for imperiled organisms. Phylogenomic and population genomic analyses based on genome-wide double digest restriction-site associated DNA sequencing (ddRAD-Seq) data has identified three allopatric lineages in the North American freshwater mussel genus Cyprogenia. Cyprogenia stegaria is restricted to the Eastern Highlands and displays little genetic structuring within this region. However, two allopatric lineages of C. aberti in the Ozark and Ouachita highlands exhibit substantial levels (mean uncorrected FST = 0.368) of genetic differentiation and each warrants recognition as a distinct evolutionary lineage. Lineages of Cyprogenia in the Ouachita and Ozark highlands are further subdivided reflecting structuring at the level of river systems. Species tree inference and species delimitation in a Bayesian framework using single nucleotide polymorphisms (SNP) data supported results from phylogenetic analyses, and supports three species of Cyprogenia over the currently recognized two species. A comparison of SNPs generated from both destructively and non-destructively collected samples revealed no significant difference in the SNP error rate, quality and amount of ddRAD sequence reads, indicating that nondestructive or trace samples can be effectively utilized to generate SNP data for organisms for which destructive sampling is not permitted.

scholarly journals Disentangling relationships among eastern Mediterranean Cymbalaria including description of a novel species from the southern Peloponnese (Greece)

2021 ◽  
Vol 307 (2) ◽  
Author(s):  
Pau Carnicero ◽  
Núria Garcia-Jacas ◽  
Llorenç Sáez ◽  
Theophanis Constantinidis ◽  
Mercè Galbany-Casals
Keyword(s):  
Eastern Mediterranean ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distribution Patterns ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Long Distance ◽  
Aegean Islands ◽  
Molecular Phylogenetic

AbstractThe eastern Mediterranean basin hosts a remarkably high plant diversity. Historical connections between currently isolated areas across the Aegean region and long-distance dispersal events have been invoked to explain current distribution patterns of species. According to most recent treatments, at least two Cymbalaria species occur in this area, Cymbalaria microcalyx and C. longipes. The former comprises several intraspecific taxa, treated at different ranks by different authors based on morphological data, evidencing the need of a taxonomic revision. Additionally, some populations of C. microcalyx show exclusive morphological characters that do not match any described taxon. Here, we aim to shed light on the systematics of eastern Mediterranean Cymbalaria and to propose a classification informed by various sources of evidence. We performed molecular phylogenetic analyses using ITS, 3’ETS, ndhF and rpl32-trnL sequences and estimated the ploidy level of some taxa performing relative genome size measures. Molecular data combined with morphology support the division of traditionally delimited C. microcalyx into C. acutiloba, C. microcalyx and C. minor, corresponding to well-delimited nrDNA lineages. Furthermore, we propose to combine C. microcalyx subsp. paradoxa at the species level. A group of specimens previously thought to belong to Cymbalaria microcalyx constitute a well-defined phylogenetic and morphological entity and are described here as a new species, Cymbalaria spetae. Cymbalaria longipes is non-monophyletic, but characterized by being glabrous and diploid, unlike other eastern species. The nrDNA data suggest at least two dispersals from the mainland to the Aegean Islands, potentially facilitated by marine regressions.

scholarly journals High parasite diversity in a neglected host: larval trematodes of Bithynia tentaculata in Central Europe

2020 ◽  
Vol 94 ◽  
Author(s):  
J. Schwelm ◽  
O. Kudlai ◽  
N.J. Smit ◽  
C. Selbach ◽  
B. Sures
Keyword(s):  
Central Europe ◽  
Phylogenetic Analyses ◽  
Snail Host ◽  
Morphological Data ◽  
Curonian Lagoon ◽  
Parasite Communities ◽  
Bithynia Tentaculata ◽  
Host Parasite ◽  
Host Families ◽  
High Parasite

Abstract Bithynids snails are a widespread group of molluscs in European freshwater systems. However, not much information is available on trematode communities from molluscs of this family. Here, we investigate the trematode diversity of Bithynia tentaculata, based on molecular and morphological data. A total of 682 snails from the rivers Lippe and Rhine in North Rhine-Westphalia, Germany, and 121 B. tentaculata from Curonian Lagoon, Lithuania were screened for infections with digeneans. In total, B. tentaculata showed a trematode prevalence of 12.9% and 14%, respectively. The phylogenetic analyses based on 55 novel sequences for 36 isolates demonstrated a high diversity of digeneans. Analyses of the molecular and morphological data revealed a species-rich trematode fauna, comprising 20 species, belonging to ten families. Interestingly, the larval trematode community of B. tentaculata shows little overlap with the well-studied trematode fauna of lymnaeids and planorbids, and some of the detected species (Echinochasmus beleocephalus and E. coaxatus) constitute first records for B. tentaculata in Central Europe. Our study revealed an abundant, diverse and distinct trematode fauna in B. tentaculata, which highlights the need for further research on this so far understudied host–parasite system. Therefore, we might currently be underestimating the ecological roles of several parasite communities of non-pulmonate snail host families in European fresh waters.

scholarly journals Young relicts and old relicts: a novel palaeoendemic vertebrate from the Australian Central Uplands

2016 ◽  
Vol 3 (10) ◽  
pp. 160018 ◽  
Author(s):  
Paul M. Oliver ◽  
Peter J. McDonald
Keyword(s):  
Late Miocene ◽  
Arid Zone ◽  
Dominant Role ◽  
Morphological Data ◽  
New Taxon ◽  
Isolated Populations ◽  
Show Evidence ◽  
Molecular Phylogenetic ◽  
Surrounding Areas ◽  
Close Relatives

Climatic change, and in particular aridification, has played a dominant role in shaping Southern Hemisphere biotas since the mid-Neogene. In Australia, ancient and geologically stable ranges within the vast arid zone have functioned as refugia for populations of mesic taxa extirpated from surrounding areas, yet the extent to which relicts may be linked to major aridification events before or after the Pliocene has not been examined in detail. Here we use molecular phylogenetic and morphological data to show that isolated populations of saxicoline geckos in the genus Oedura from the Australian Central Uplands, formerly confounded as a single taxon, actually comprise two divergent species with contrasting histories of isolation. The recently resurrected Oedura cincta has close relatives occurring elsewhere in the Australian arid biomes with estimated divergence dates concentrated in the early Pliocene. A new taxon (described herein) diverged from all extant Oedura much earlier, well before the end of the Miocene. A review of data for Central Uplands endemic vertebrates shows that for most (including Oedura cincta ), gene flow with other parts of Australia probably occurred until at least the very late Miocene or Pliocene. There are, however, a small number of palaeoendemic taxa—often ecologically specialized forms—that show evidence of having persisted since earlier intensification of aridity in the late Miocene.

High levels of genetic structuring in the Antarctic springtailCryptopygus terranovus

2017 ◽  
Vol 29 (4) ◽  
pp. 311-323 ◽  
Author(s):  
Antonio Carapelli ◽  
Chiara Leo ◽  
Francesco Frati
Keyword(s):  
Molecular Clock ◽  
Phylogenetic Analyses ◽  
Mitochondrial Gene ◽  
Analytical Techniques ◽  
Genetic Structuring ◽  
Relict Species ◽  
Mitochondrial Haplotypes ◽  
Springtail Species ◽  
Limited Gene Flow ◽  
The Antarctic

AbstractPrevious work focused on allozymes and mitochondrial haplotypes has detected high levels of genetic variability betweenCryptopygus terranovuspopulations, a springtail species endemic to Antarctica, until recently namedGressittacantha terranova. This study expands these biogeographical surveys using additional analytical techniques, providing a denser haplotype dataset and a wider sampling of localities. Specimens were collected from 11 sites across Victoria Land and sequenced for the cytochromecoxidase subunit I mitochondrial gene (cox1). Haplotypes were used for population genetics, demographic, molecular clock and Bayesian phylogenetic analyses. Landscape distribution and clustering of haplotypes were also examined for the first time in this species. Only three (out of 67) haplotypes are shared among populations, suggesting high genetic structure and limited gene flow between sites. As in previous studies, the population of Apostrophe Island has a closer genetic similarity with those of the central sites, rather than with its neighbours. Molecular clock estimates point to early differentiation of haplotypes in the late/mid-Miocene, also supporting the view thatC. terranovusis a relict species that survived on the Antarctic continent during the Last Glacial Maximum. The present genetic composition of populations represents a mixture of ancient and more recent haplotypes, sometimes occurring in the same localities.

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