scholarly journals Phenotypic diversity assessment within a major ex situ collection of wild endemic coffees in Madagascar

2020 ◽  
Vol 126 (5) ◽  
pp. 849-863
Author(s):  
Aurore Rimlinger ◽  
Nathalie Raharimalala ◽  
Véronique Letort ◽  
Jean-Jacques Rakotomalala ◽  
Dominique Crouzillat ◽  
...  

Abstract Background and Aims Like other clades, the Coffea genus is highly diversified on the island of Madagascar. The 66 endemic species have colonized various environments and consequently exhibit a wide diversity of morphological, functional and phenological features and reproductive strategies. The trends of interspecific trait variation, which stems from interactions between genetically defined species and their environment, still needed to be addressed for Malagasy coffee trees. Methods Data acquisition was done in the most comprehensive ex situ collection of Madagascan wild Coffea. The structure of endemic wild coffees maintained in an ex situ collection was explored in terms of morphological, phenological and functional traits. The environmental (natural habitat) effect was assessed on traits in species from distinct natural habitats. Phylogenetic signal (Pagel’s λ, Blomberg’s K) was used to quantify trait proximities among species according to their phylogenetic relatedness. Key Results Despite the lack of environmental difference in the ex situ collection, widely diverging phenotypes were observed. Phylogenetic signal was found to vary greatly across and even within trait categories. The highest values were exhibited by the ratio of internode mass to leaf mass, the length of the maturation phase and leaf dry matter content (ratio of dry leaf mass to fresh leaf mass). By contrast, traits weakly linked to phylogeny were either constrained by the original natural environment (leaf size) or under selective pressures (phenological traits). Conclusions This study gives insight into complex patterns of trait variability found in an ex situ collection, and underlines the opportunities offered by living ex situ collections for research characterizing phenotypic variation.

2021 ◽  
Vol 948 (1) ◽  
pp. 012001
Author(s):  
N A Devi ◽  
R Eprilurahman ◽  
D S Yudha ◽  
S Raharjo ◽  
M As-Singkily ◽  
...  

Abstract The endemic Chelodina mccordi is considered extinct in the wild; however, ex-situ populations are thriving and sampled for our genetic diversity assessment. We used three sequences resulting from blood and tissue samples of five individual turtles amplified for 650-bp cytochrome oxidase I (COI) fragment of the mitochondrial DNA. We analysed a total of 30 barcoding DNA sequences for phylogenetic relationships and genetic distances among Chelodina spp. Nucleotide diversity of eight C. mccordi samples is 0.007 ± 0.001 with a haplotype diversity of 0.893 ± 0.086. All these samples form a monophyletic clade that is sister to a clade of Australian and New Guinean long-necked turtles. Genetic distances calculated using Kimura 2-paramater model among C. mccordi sequences range between 0.2% and 1.5%, while a few others are without distance. The shortest genetic distance is between individuals from Rote Island, whereas the longest distance was found between individuals, each of which was derived from parental stocks originating in Rote and Timor islands. A genetic distance of 1.1% - 1.5% is likely to denote distinction at subspecies level. Results of this study could help in reintroducing captive individuals into their natural habitats. Thus, captive breeding programme of this species may help its conservation.


Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 131 ◽  
Author(s):  
Mohd Asgher ◽  
Susheel Verma ◽  
Nafees A. Khan ◽  
Dhiraj Vyas ◽  
Priyanka Kumari ◽  
...  

Valeriana wallichii, a perennial herb belonging to family Valerianaceae, is an important medicinal herb of the Himalayan region. The incessant exploitation of nature for meeting the demands of the pharmaceutical industry has put unbearable pressure on its natural habitats. A study on its physiological, biochemical, growth and reproductive attributes was planned. Physiological study revealed that ex-situ (outside their natural habitat) populations faced severe stress as compared to in-situ (natural habitat) plants. The difference in the performance of these habitat plants was related to superoxide and H2O2 in the leaves. Photosynthetic attributes were increased in in-situ populations. Proline content and its biosynthetic enzymes ornithine aminotransferase, and pyrroline-5-carboxylate reductase showed an increase in ex-situ plants; proline oxidase decreased. Glucose-6-phosphate dehydrogenase, shikimic acid dehydrogenese, phenylalanine lyase, and flavonoids content showed an increment in ex-situ plants. Antioxidants enzyme superoxide dismutase, catalase, ascorbate peroxidase and reduced glutathione showed an increment in ex-situ conditions. Growth and reproductive attributes were more in ex-situ plants. The observations made are suggestive that a comprehensive conservation programme involving in-situ as well as ex-situ strategies will be effective for the conservation and long term survival of the species.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Cheng Gong ◽  
Liangtao Li ◽  
Jan C. Axmarcher ◽  
Zhenrong Yu ◽  
Yunhui Liu

AbstractIn the intensively farmed, homogenous agricultural landscape of the North China Plain, family graveyards form distinct cultural landscape features. In addition to their cultural value, these graveyards represent semi-natural habitat islands whose potential roles in biodiversity conservation and ecological functioning has remained poorly understood. In this study, we investigated plant species richness on 199 family graveyards of different ages and sizes. In accordance with biogeography theory, both overall and insect-pollinated plant species richness increased with area and age of graveyards. Even small graveyards show a strong potential for conserving local plant richness, and a mosaic of both large and small family graveyards could play an important role in the conservation of farmland biodiversity and related ecosystem functions. The launch of agri-environmental measures that conserve and create semi-natural habitats, in turn benefitting agricultural biodiversity and ecological functioning, has proven difficult in China due to the shortage of dispensable arable land. Given the great value of family graveyards as semi-natural habitats reflected in our study, we propose to focus preliminary efforts on conserving these landscape features as existing, widespread and culturally important semi-natural habitat islands. This would represent an effective, complementary policy to a subsequent re-establishment of other semi-natural habitats for the conservation of biodiversity and ecological functioning in agricultural landscapes.


Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1341
Author(s):  
Giandomenico Corrado ◽  
Marcello Forlani ◽  
Rosa Rao ◽  
Boris Basile

Apricot (Prunus armeniaca L.) is an economically important tree species globally cultivated in temperate areas. Italy has an ample number of traditional varieties, but numerous landraces are abandoned and at risk of extinction because of increasing urbanization, agricultural intensification, and varietal renewal. In this work, we investigated the morphological and genetic diversity present in an ex-situ collection of 28 neglected varieties belonging to the so-called “Vesuvian apricot”. Our aim was to understand the level of diversity and the possible link between the promotion of specific fruit types (e.g., by public policies) and the intraspecific variation in apricot. The combination of five continuous and seven categorical traits allowed us to phenotypically distinguish the varieties; while fruit quality-related attributes displayed high variation, both apricot size and skin colour were more uniform. The twelve fluorescent-based Simple Sequence Repeats (SSRs) markers identified cultivar-specific molecular profiles and revealed a high molecular diversity, which poorly correlated with that described by the morphological analysis. Our results highlighted the complementary information provided by the two sets of descriptors and that DNA markers are necessary to separate morphologically related apricot landraces. The observed morphological and genetic differences suggest a loss of diversity influenced by maintenance breeding of specific pomological traits (e.g., skin colour and size). Finally, our study provided evidence to recommend complementary strategies to avoid the loss of diversity in apricot. Actions should pivot on both the promotion of easily identified premium products and more inclusive biodiversity-centred on-farm strategies.


1983 ◽  
Vol 31 (5) ◽  
pp. 695 ◽  
Author(s):  
IJ Rooke ◽  
SD Bradshaw ◽  
RA Langworthy

Total body water content (TBW) and TBW turnover were measured by means of tritiated water (HTO) in free-ranging populations of silvereyes, Zosterops lateralis, near Margaret River, W.A. Birds were studied in their natural habitats during spring and summer, and compared with a vineyard population in summer. In the natural habitat TBW content was found to be 77.6% in spring, which was not significantly different from that measured in summer (78.3%). Birds in vineyards in summer, however, were dehydrated, with a TBW content of 69.4%. Calculated rates of water influx for spring, summer and summer vineyards birds were 1.44,2.20 and 0.65 ml g.day-' respectively. These water turnover rates are much higher than those of any other bird yet studied. Dehydration was marked in the vineyard birds, with a significantly lower TBW content and an average net water loss of 0.63 ml day-'. Laboratory studies showed that silvereyes have a low tolerance to sodium loading. Their tolerance is, however, quite adequate for them to drink the most concentrated free water available to them in the field. Ingestion of concentrated sugar solutions of up to 25% did not provoke an osmotic diuresis and thus cannot account for the dehydration and negative water balance of vineyard birds.


2019 ◽  
Vol 77 ◽  
pp. 1-18
Author(s):  
Julien Carlier ◽  
James Moran

Across Europe, Greenways upcycle disused railway infrastructure into non-motorised public infrastructure, often with limited consideration to potential ecological synergies. Pre-development, disused transport corridors become relatively undisturbed and potentially host diverse semi-natural habitats. The study objectives were 1) to produce a highly detailed and accurate dataset using remote sensing with rapid assessment techniques for ground truthing and 2) subsequently examine habitat diversity existing along a proposed Greenway. A 7000 ha study corridor was based on a disused railway proposed as a transfrontier Greenway connecting the Republic of Ireland and the United Kingdom. The study applied a rapid-assessment virtual validation techniquealongside remote sensing and accuracy assessment. Inter-relationship between seminatural habitat diversity and land-use intensification was examined. Remote sensing accuracies of 89% and 99% for a real and linear habitat classification were obtained. Degrees of land-use intensification were observed throughout the corridor, highlighting the importance of maintaining and enhancing remaining semi-natural habitat that exists along the proposed Greenway route. Through understanding the landscape matrix composition and semi-natural habitat diversity, European Greenwayscan achieve multi-functionality for ecosystem conservation, forming integral components of Green Infrastructure.


2012 ◽  
Vol 10 (4) ◽  
pp. 75-96
Author(s):  
Piotr Matyjasiak

The aim of this paper is (i) to review the method of valorization of natural resources as applied in the environmental impact assessment, and (ii) to develop recommendations on how valorization expertise should be prepared in order to be comprehensive and transparent. Valorization is the proper time to carry out identi>cation of the possible negative environmental impacts and damages of a planned project. It is recommended to perform valorization due to the state (numbers) and functions (quality) of natural resources. This approach is related to the concept of environmental damage, which is defined as a measurable adverse change in a natural resource or measurable impairment of a natural resource service (which means the functions performed by a natural resource for the benefit of another natural resource or the public). Valorization of natural resources should include an assessment of potential environmental damage, including an impact on the local biodiversity, the ecological connectivity, the N2000 network, and the legally protected areas. The valorization of natural resources should be performed at the following thematic levels focusing on the role of the area under consideration due to: (1) the implementation of the objectives of protection of Nature 2000 network and its overall coherence, (2) the implementation of the objectives of protection of legally protected areas other than N2000, (3) the maintenance of the ecological connectivity in a context other than the coherence of Nature 2000 network, (4) the maintenance of species and natural habitats with favorable conservation status, (5) the conservation of species and natural habitat types that are not legally protected.


Author(s):  
Vladimir Grigor'ev ◽  
Dan Chuong Fam Thi ◽  
Rustam Nizamov ◽  
Igor' Grigor'ev

Aquaculture is one of the most promising and dynamically developing types of agricultural production, especially in countries with warm climates. The research was carried out to analyze the current situation in aquaculture in Vietnam to clarify the existing problems and prospects of this industry. When collecting materials, we used statistical data from the Government of the Socialist Republic of Vietnam, as well as information from representatives of the Institute of Economics and Business of the Vietnam National University (Hanoi). In the Socialist Republic of Vietnam, aquaculture is well developed and continues to actively expand, annually increasing the production of products that are in significant demand on the world market. One of the most important problems of the industry is the threat to natural biodiversity, primarily due to the reduction of the natural habitats of the inhabitants of rivers and mangroves. An equally important problem is the strong dependence of the production of products, primarily shrimp, on foreign markets, which today is objective and insurmountable. Due to the use of chemicals and antibiotics in aquaculture, especially in natural conditions, environmental degradation is possible. Among the promising areas for the development of the industry is the convergence of natural ecosystems and agriculture, a good example of which is the cultivation of shrimp in mangroves without destroying the forest cover. It is possible to switch to aquaculture as an adaptation to changes in the ecological situation, primarily to the salinization of river deltas. As a result of a decrease in the profitability of fishing in the natural habitat of fish and shrimps, an increase in their populations in natural conditions is possible


2021 ◽  
Vol 12 ◽  
Author(s):  
Zhaoying Zeng ◽  
Dan Mou ◽  
Li Luo ◽  
Wenlin Zhong ◽  
Lin Duan ◽  
...  

Cordyceps cicadae is an entomogenous fungus with important uses in traditional Chinese medicine. However, its wild resources have not met consumers’ demand due to excessive harvesting practices. Artificial cultivation is therefore an important alternative, but research on cultivating C. cicadae in natural habitats has not been reported. In this study, we aimed to explore the viability of cultivating C. cicadae in a natural habitat, in the soil of Pinus massoniana forest. We assessed and compared the yield, metabolite contents and bacterial community composition of C. cicadae grown in the Antheraea pernyi pupae at different growth stages, and under different cultivation conditions, in the soil of a natural habitat and in sterile glass bottles. Our results showed that cultivating C. cicadae in a natural habitat is feasible, with up to 95% of pupae producing C. cicadae fruiting bodies. The content of nitrogen compounds (amino acids) in C. cicadae cultivated in a natural habitat was significantly higher than in glass bottles, while the yield and carbon compound (mannitol and polysaccharide) and nucleoside (cordycepin and adenosine) contents were lower. Different bacterial genera were enriched in C. cicadae at different growth stages and cultivation environments, and these bacterial genera were closely related to metabolites contents during growth. This study demonstrated the viability of a novel cultivation method of C. cicadae, which could be used as an alternative to wild stocks of this fungus. These findings provided new insights into the growth mechanism of C. cicadae and its interaction with soil microorganisms.


2018 ◽  
Author(s):  
Miguel Á. Collado ◽  
Daniel Sol ◽  
Ignasi Bartomeus

ABSTRACTHabitat loss and alteration is widely considered one of the main drivers of the current loss of pollinator diversity. Unfortunately, we still lack a comprehensive analysis of habitat importance, use and preference for major groups of pollinators. Here, we address this gap analysing a large dataset of 15,762 bee specimens (more than 400 species) across northeast USA. We found that natural habitats sustain the highest bee diversity, with many species strongly depending on such habitats. By characterizing habitat use and preference for the 45 most abundant species, we also show that many bee species can use human-altered habitats despite exhibiting strong and clear preferences for forested habitats. However, only a few species appear to do well when the habitat has been drastically modified. We conclude that although altered environments may harbor a substantial number of species, preserving natural areas is still essential to guarantee the conservation of bee biodiversity.


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