scholarly journals Torix Rickettsia are widespread in arthropods and reflect a neglected symbiosis

GigaScience ◽  
2021 ◽  
Vol 10 (3) ◽  
Author(s):  
Jack Pilgrim ◽  
Panupong Thongprem ◽  
Helen R Davison ◽  
Stefanos Siozios ◽  
Matthew Baylis ◽  
...  
Keyword(s):  
Hot Spots ◽  
Hot Spot ◽  
Significant Proportion ◽  
Intracellular Bacteria ◽  
Future Directions ◽  
Previous Hypothesis ◽  
Causative Agents ◽  
Phloem Feeding ◽  
Genome Projects ◽  
Human And Animal Diseases

Abstract Background Rickettsia are intracellular bacteria best known as the causative agents of human and animal diseases. Although these medically important Rickettsia are often transmitted via haematophagous arthropods, other Rickettsia, such as those in the Torix group, appear to reside exclusively in invertebrates and protists with no secondary vertebrate host. Importantly, little is known about the diversity or host range of Torix group Rickettsia. Results This study describes the serendipitous discovery of Rickettsia amplicons in the Barcode of Life Data System (BOLD), a sequence database specifically designed for the curation of mitochondrial DNA barcodes. Of 184,585 barcode sequences analysed, Rickettsia is observed in ∼0.41% of barcode submissions and is more likely to be found than Wolbachia (0.17%). The Torix group of Rickettsia are shown to account for 95% of all unintended amplifications from the genus. A further targeted PCR screen of 1,612 individuals from 169 terrestrial and aquatic invertebrate species identified mostly Torix strains and supports the “aquatic hot spot” hypothesis for Torix infection. Furthermore, the analysis of 1,341 SRA deposits indicates that Torix infections represent a significant proportion of all Rickettsia symbioses found in arthropod genome projects. Conclusions This study supports a previous hypothesis that suggests that Torix Rickettsia are overrepresented in aquatic insects. In addition, multiple methods reveal further putative hot spots of Torix Rickettsia infection, including in phloem-feeding bugs, parasitoid wasps, spiders, and vectors of disease. The unknown host effects and transmission strategies of these endosymbionts make these newly discovered associations important to inform future directions of investigation involving the understudied Torix Rickettsia.

Spatial Hotspot Analysis of Bucharest’s Urban Heat Island (UHI) Using Modis Data

2018 ◽  
Vol 18 (1) ◽  
pp. 14-22 ◽  
Author(s):  
Georgiana Grigoraș ◽  
Bogdan Urițescu
Keyword(s):  
Surface Temperature ◽  
Air Temperature ◽  
Land Surface Temperature ◽  
Hot Spots ◽  
Land Surface ◽  
Hot Spot ◽  
Monitoring Network ◽  
Residential Areas ◽  
Hotspot Analysis ◽  
The City

Abstract The aim of the study is to find the relationship between the land surface temperature and air temperature and to determine the hot spots in the urban area of Bucharest, the capital of Romania. The analysis was based on images from both moderate-resolution imaging spectroradiometer (MODIS), located on both Terra and Aqua platforms, as well as on data recorded by the four automatic weather stations existing in the endowment of The National Air Quality Monitoring Network, from the summer of 2017. Correlation coefficients between land surface temperature and air temperature were higher at night (0.8-0.87) and slightly lower during the day (0.71-0.77). After the validation of satellite data with in-situ temperature measurements, the hot spots in the metropolitan area of Bucharest were identified using Getis-Ord spatial statistics analysis. It has been achieved that the “very hot” areas are grouped in the center of the city and along the main traffic streets and dense residential areas. During the day the "very hot spots” represent 33.2% of the city's surface, and during the night 31.6%. The area where the mentioned spots persist, falls into the "very hot spot" category both day and night, it represents 27.1% of the city’s surface and it is mainly represented by the city center.

The family Orthotrichaceae (Bryophyta) in flora of Russia: results of revision and biogeographical review

2018 ◽  
Vol 52 (2) ◽  
pp. 519-534 ◽  
Author(s):  
V. E. Fedosov
Keyword(s):  
Hot Spots ◽  
Latitudinal Gradient ◽  
Hot Spot ◽  
Spatial Differentiation ◽  
Taxonomic Composition ◽  
Undescribed Species ◽  
Longitudinal Gradient ◽  
Biogeographic Pattern ◽  
The Family ◽  
North Pacific Region

Recent studies on Orthotrichoid mosses in Russia are summarized genus by genus. Orthotrichum furcatum Otnyukova is synonymized with Nyholmiella obtusifolia. Orthotrichum vittii is excluded from the Russian moss flora. Description of O. dagestanicum is amended. Fifty four currently recognized species from 9 genera of the Orthotrichaceae are presently known to occur in Russia; list of species with common synonyms and brief review of distribution in Russia is presented. Numerous problematic specimens with unresolved taxonomy were omitted for future. Revealed taxonomical inconsistencies in the genera Zygodon, Ulota, Lewinskya, Nyholmiella, Orthotrichum are briefly discussed. Main regularities of spatial differentiation of the family Orthotrichaceae in Russia are considered. Recently presented novelties contribute to the certain biogeographic pattern, indicating three different centers of diversity of the family, changing along longitudinal gradient. Unlike European one, continental Asian diversity of Orthotrichaceae is still poorly known, the Siberian specimens which were previously referred to European species in most cases were found to represent other, poorly known or undescribed species. North Pacific Region houses peculiar and poorly understood hot spot of diversity of Orthotrichoid mosses. Thus, these hot spots are obligatory to be sampled in course of revisions of particular groups, since they likely comprise under-recorded cryptic- or semi-cryptic species. Latitudinal gradient also contributes to the spatial differentiation of the revealed taxonomic composition of Orthotrichaceae.

scholarly journals Family Practices and Temporality at Breakfast: Hot Spots, Convenience and Care

Sociology ◽  
2021 ◽  
pp. 003803852110155
Author(s):  
Daniela Pirani ◽  
Vicki Harman ◽  
Benedetta Cappellini
Keyword(s):  
Hot Spots ◽  
Hot Spot ◽  
Family Meals ◽  
Personal Integrity ◽  
Structured Interviews ◽  
Time Saving ◽  
Family Time ◽  
Dominant Feature ◽  
Family Practices ◽  
Cold Spots

Drawing on 34 semi-structured interviews, this study investigates the temporality of family practices taking place in the hot spot. It does so by looking at how breakfast is inserted in the economy of family time in Italy. Our data show that breakfast, contrary to other meals, allows the adoption of more individualised and asynchronous practices, hinged on the consumption of convenience products. These time-saving strategies are normalised as part of doing family. Although the existing literature suggests that convenience and care are in opposition, and consumers of convenience products can experience anxiety and a lack of personal integrity, such features were not a dominant feature of our participants’ accounts. These findings suggest that the dichotomies of hot/cold spots and care/convenience are not always experienced in opposition when embedded within family practices. Hence, this study furthers understandings of family meals, temporality and the distinction between hot and cold spots.

Investigation of On-Chip Hot Spot Cooling Using Microchannel Heat Sink

2013 ◽  
Vol 455 ◽  
pp. 466-469
Author(s):  
Yun Chuan Wu ◽  
Shang Long Xu ◽  
Chao Wang
Keyword(s):  
Heat Flux ◽  
Heat Sink ◽  
Hot Spots ◽  
Hot Spot ◽  
High Heat ◽  
High Heat Flux ◽  
Microchannel Heat Sink ◽  
Three Dimensional Model ◽  
Spot Cooling ◽  
On Chip

With the increase of performance demands, the nonuniformity of on-chip power dissipation becomes greater, causing localized high heat flux hot spots that can degrade the processor performance and reliability. In this paper, a three-dimensional model of the copper microchannel heat sink, with hot spot heating and background heating on the back, was developed and used for numerical simulation to predict the hot spot cooling performance. The hot spot is cooled by localized cross channels. The pressure drop, thermal resistance and effects of hot spot heat flux and fluid flow velocity on the cooling of on-chip hot spots, are investigated in detail.

scholarly journals Deletion Formation Between the Two Salmonella typhimurium Flagellin Genes Encoded on the Mini F Plasmid: Escherichia coli ssb Alleles Enhance Deletion Rates and Change Hot-Spot Preference for Deletion Endpoints

Genetics ◽  
1997 ◽  
Vol 145 (3) ◽  
pp. 563-572 ◽  
Author(s):  
Takafumi Mukaihara ◽  
Masatoshi Enomoto
Keyword(s):  
Escherichia Coli ◽  
Salmonella Typhimurium ◽  
Hot Spots ◽  
Hot Spot ◽  
Direct Repeats ◽  
Replication Slippage ◽  
Detection Systems ◽  
Deletion Formation ◽  
Homologous Sequences ◽  
Deletion Detection

Deletion formation between the 5′-mostly homologous sequences and between the 3′-homeologous sequences of the two Salmonella typhimurium flagellin genes was examined using plasmid-based deletion-detection systems in various Escherichia coli genetic backgrounds. Deletions in plasmid pLC103 occur between the 5′ sequences, but not between the 3′ sequences, in both RecA-independent and RecA-dependent ways. Because the former is predominant, deletion formation in a recA background depends on the length of homologous sequences between the two genes. Deletion rates were enhanced 30- to 50-fold by the mismatch repair defects, mutS, mutL and uvrD, and 250-fold by the ssb-3 allele, but the effect of the mismatch defects was canceled by the ΔrecA allele. Rates of the deletion between the 3′ sequences in plasmid pLC107 were enhanced 17- to 130-fold by ssb alleles, but not by other alleles. For deletions in pLC107, 96% of the endpoints in the recA+ background and 88% in ΔrecA were in the two hot spots of the 60- and 33-nucleotide (nt) homologous sequences, whereas in the ssb-3 background >50% of the endpoints were in four- to 14-nt direct repeats dispersed in the entire 3′ sequences. The deletion formation between the homeologous sequences is RecA-independent but depends on the length of consecutive homologies. The mutant ssb allele lowers this dependency and results in the increase in deletion rates. Roles of mutant SSB are discussed with relation to misalignment in replication slippage.

scholarly journals Does Entrepreneurship Contribute to Innovation Performance When Considering Spatial Spillover Effects? Evidence From the Automobile Industrial Cluster in China

SAGE Open ◽  
2020 ◽  
Vol 10 (4) ◽  
pp. 215824402098299
Author(s):  
Haishi Li ◽  
Xiangyi Xu ◽  
Shuaishuai Li
Keyword(s):  
Automobile Industry ◽  
Hot Spots ◽  
Hot Spot ◽  
Empirical Support ◽  
Temporal Patterns ◽  
Spillover Effects ◽  
Industrial Clusters ◽  
Innovation Performance ◽  
Spatial Spillover ◽  
Spatio Temporal

Entrepreneurship, as one of the important factors to promote industrial innovation, is closely related to the development of the regional economy. Based on the methods of Kernel density and standard deviation ellipse, this article presents the spatio-temporal patterns of entrepreneurship and innovation performance. The article also examines the spatial spillover mechanism of entrepreneurship on innovation performance by establishing spatial Durbin models. The heterogeneous results of the spatial regression models in six clusters are also discussed. The final results show that the spatio-temporal patterns of entrepreneurship are gradually presenting three major hot spots and two secondary hot spots while the spatio-temporal patterns of innovation performance are presenting four major hot spots and a secondary hot spot; the spatial distribution of both entrepreneurship and innovation performance are changing regularly; the spillover effects of entrepreneurship and innovation performance are both significant; the spatial spillover mechanisms in six automobile industrial clusters are different. The results can provide empirical support for decision-making in the automobile industry in China in the future.

scholarly journals Prediction of Hourly Effect of Land Use on Crime

2018 ◽  
Vol 8 (1) ◽  
pp. 16 ◽  
Author(s):  
Irina Matijosaitiene ◽  
Peng Zhao ◽  
Sylvain Jaume ◽  
Joseph Gilkey Jr
Keyword(s):  
Machine Learning ◽  
Land Use ◽  
Logistic Regression ◽  
Hot Spots ◽  
Urban Areas ◽  
Prediction Models ◽  
Hot Spot ◽  
Time Range ◽  
Land Uses ◽  
Police Departments

Predicting the exact urban places where crime is most likely to occur is one of the greatest interests for Police Departments. Therefore, the goal of the research presented in this paper is to identify specific urban areas where a crime could happen in Manhattan, NY for every hour of a day. The outputs from this research are the following: (i) predicted land uses that generates the top three most committed crimes in Manhattan, by using machine learning (random forest and logistic regression), (ii) identifying the exact hours when most of the assaults are committed, together with hot spots during these hours, by applying time series and hot spot analysis, (iii) built hourly prediction models for assaults based on the land use, by deploying logistic regression. Assault, as a physical attack on someone, according to criminal law, is identified as the third most committed crime in Manhattan. Land use (residential, commercial, recreational, mixed use etc.) is assigned to every area or lot in Manhattan, determining the actual use or activities within each particular lot. While plotting assaults on the map for every hour, this investigation has identified that the hot spots where assaults occur were ‘moving’ and not confined to specific lots within Manhattan. This raises a number of questions: Why are hot spots of assaults not static in an urban environment? What makes them ‘move’—is it a particular urban pattern? Is the ‘movement’ of hot spots related to human activities during the day and night? Answering these questions helps to build the initial frame for assault prediction within every hour of a day. Knowing a specific land use vulnerability to assault during each exact hour can assist the police departments to allocate forces during those hours in risky areas. For the analysis, the study is using two datasets: a crime dataset with geographical locations of crime, date and time, and a geographic dataset about land uses with land use codes for every lot, each obtained from open databases. The study joins two datasets based on the spatial location and classifies data into 24 classes, based on the time range when the assault occurred. Machine learning methods reveal the effect of land uses on larceny, harassment and assault, the three most committed crimes in Manhattan. Finally, logistic regression provides hourly prediction models and unveils the type of land use where assaults could occur during each hour for both day and night.

Thermal Decomposition Conditions of Emulsion Matrix in the Emulsifier

2014 ◽  
Vol 1082 ◽  
pp. 387-390
Author(s):  
Hui Sheng Zhou ◽  
Xing Hua Xie ◽  
Kang Xu
Keyword(s):  
Thermal Decomposition ◽  
Ammonium Nitrate ◽  
Hot Spots ◽  
Hot Spot ◽  
Decomposition Mechanism ◽  
Heat Accumulation ◽  
Emulsion Explosives ◽  
Starting Point ◽  
Emulsion Matrix

The main background was the "3.11" accident in this paper. The starting point was based on the experts’ conclusions of investigation and analysis in the accident. Combining the decomposition mechanism of ammonium nitrate in the emulsion explosives and the lessons from the production of emulsion explosives explosion, the conditions of the emulsion explosives (matrix) thermal decomposition in the emulsifier are given that are the formation of hot spot and the accumulation of heat. Then the factors of hot spots generated in the production of emulsion explosives and the occurred conditions of the heat accumulation are analyzed and summarized.

Crime Mapping and Crime Analysis of Property Crimes in Jodhpur

2017 ◽  
Vol 55 (2) ◽  
pp. 205-219 ◽  
Author(s):  
Swikar Lama ◽  
Sikandar Singh Rathore
Keyword(s):  
Environmental Factors ◽  
Crime Prevention ◽  
Police Officers ◽  
Hot Spots ◽  
Hot Spot ◽  
Situational Crime Prevention ◽  
Crime Analysis ◽  
Crime Mapping ◽  
Property Crimes

AbstractThis study is based on crime mapping and crime analysis of property crimes in Jodhpur. The property crimes which were selected were house breaking, auto thefts and chain snatching. Data from police stations were used to generate the maps to locate hot spots of crimes. The profile of these hot spots was analyzed through observations supplemented with interviews of police officers and public 100 cases of house breaking and 100 cases of auto thefts were further analyzed to understand the contexts which lead to these crimes. These contexts are in consonance with situational crime prevention theories. This study may help to understand the environmental factors which may be responsible for certain places becoming hot spot areas of property crimes in Jodhpur.

An Ancient Retrovirus-like Element Contains Hot Spots for SINE Insertion

Genetics ◽  
2001 ◽  
Vol 158 (2) ◽  
pp. 769-777
Author(s):  
Michael A Cantrell ◽  
Brian J Filanoski ◽  
Angela R Ingermann ◽  
Katherine Olsson ◽  
Nicole DiLuglio ◽  
...  
Keyword(s):  
Hot Spots ◽  
Hot Spot ◽  
Phylogenetic Analyses ◽  
Common Ancestry ◽  
Specific Element ◽  
Sine Insertion ◽  
Specific Locus ◽  
Multiple Species ◽  
Phylogenetic Character ◽  
Over Time

Abstract Vertebrate retrotransposons have been used extensively for phylogenetic analyses and studies of molecular evolution. Information can be obtained from specific inserts either by comparing sequence differences that have accumulated over time in orthologous copies of that insert or by determining the presence or absence of that specific element at a particular site. The presence of specific copies has been deemed to be an essentially homoplasy-free phylogenetic character because the probability of multiple independent insertions into any one site has been believed to be nil. Mys elements are a type of LTR-containing retrotransposon present in Sigmodontine rodents. In this study we have shown that one particular insert, mys-9, is an extremely old insert present in multiple species of the genus Peromyscus. We have found that different copies of this insert show a surprising range of sizes, due primarily to a continuing series of SINE (short interspersed element) insertions into this locus. We have identified two hot spots for SINE insertion within mys-9 and at each hot spot have found that two independent SINE insertions have occurred at identical sites. These results have major repercussions for phylogenetic analyses based on SINE insertions, indicating the need for caution when one concludes that the existence of a SINE at a specific locus in multiple individuals is indicative of common ancestry. Although independent insertions at the same locus may be rare, SINE insertions are not homoplasy-free phylogenetic markers.

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