scholarly journals Characterization of Phytophthora nicotianae Resistance Conferred by the Introgressed Nicotiana rustica Region, Wz, in Flue-Cured Tobacco

Plant Disease ◽  
2018 ◽  
Vol 102 (2) ◽  
pp. 309-317 ◽  
Author(s):  
Kestrel L. McCorkle ◽  
Katherine Drake-Stowe ◽  
Ramsey S. Lewis ◽  
David Shew
Keyword(s):  
Lesion Size ◽  
Resistance Mechanisms ◽  
Phytophthora Nicotianae ◽  
Slight Reduction ◽  
Additional Source ◽  
Black Shank ◽  
Initial Inoculum ◽  
Complete Resistance ◽  
Host Generation

Black shank, caused by Phytophthora nicotianae, is one of the most important diseases affecting tobacco worldwide and is primarily managed through use of host resistance. An additional source of resistance to P. nicotianae, designated as Wz, has been introgressed into Nicotiana tabacum from N. rustica. The Wz gene region confers high levels of resistance to all races, but has not been characterized. Our study found Wz-mediated resistance is most highly expressed in the roots, with only a slight reduction in stem-lesion size in Wz genotypes compared with susceptible controls. No substantial relationships were observed between initial inoculum levels and disease development on Wz genotypes, which is generally consistent with qualitative or complete resistance. Isolates of P. nicotianae adapted for five host generations on plants with the Wz gene caused higher disease severity than isolates adapted on Wz plants for only one host generation. Wz-adapted isolates did not exhibit increased aggressiveness on genotypes with other sources of partial resistance, suggesting pathogen adaptation was specific to the Wz gene. To reduce potential for pathogen population shifts with virulence on Wz genotypes, Wz should be combined with other resistance sources and rotation of varying black shank resistance mechanisms is also recommended.

scholarly journals Characterization of the Black Shank Pathogen, Phytophthora nicotianae, Across North Carolina Tobacco Production Areas

Plant Disease ◽  
2018 ◽  
Vol 102 (6) ◽  
pp. 1108-1114 ◽  
Author(s):  
Courtney A. Gallup ◽  
Kestrel L. McCorkle ◽  
Kelly L. Ivors ◽  
David Shew
Keyword(s):  
North Carolina ◽  
Natural Populations ◽  
Hyphal Growth ◽  
The United States ◽  
The State ◽  
Phytophthora Nicotianae ◽  
Mating Types ◽  
Black Shank ◽  
Nuclear Regions

Black shank disease of tobacco, caused by the oomycete Phytophthora nicotianae, is a major threat to production in the United States and tobacco-producing areas worldwide. In a statewide survey of North Carolina, the rapid shift from race 0 to race 1 was documented. Collected pathogen isolates were characterized phenotypically for mating type and mefenoxam sensitivity, and genotypically by comparing sequences from three cytoplasmic and two nuclear regions. Both the A1 and A2 mating types were found throughout the state. When both mating types were recovered from the same field, pairings of isolates yielded viable oospores, indicating for the first time the potential for sexual sporulation by P. nicotianae in natural populations. Because the loss of complete resistance required a renewed use of the fungicide mefenoxam, a subset of the survey isolates was screened for sensitivity to the fungicide. All isolates were sensitive, with a mean effective concentration to inhibit 50% of hyphal growth of 0.4 μg/ml that was similar across mating types and races. Molecular characterization of 226 isolates revealed that the pathogen exists as multiple clonal types within the state. Genetic diversity among the pathogen population and the potential for sexual recombination may help explain the ability of the pathogen to rapidly adapt to host resistance genes.

Adaptation of Phytophthora nicotianae to multiple sources of partial-resistance in tobacco.

Plant Disease ◽  
2021 ◽  
Author(s):  
Jing Jin ◽  
Kestrel Lannon McCorkle ◽  
Vicki Cornish ◽  
Ignazio Carbone ◽  
Ramsey Lewis ◽  
...  
Keyword(s):  
Partial Resistance ◽  
Single Gene ◽  
Field Studies ◽  
Phytophthora Nicotianae ◽  
Multiple Sources ◽  
Rapid Loss ◽  
Sources Of Resistance ◽  
Black Shank ◽  
Race 1

Host resistance is an important tool in the management of black shank disease of tobacco. While race development leads to rapid loss of single-gene resistance, the adaptation by Phytophthora nicotianae to sources of partial resistance from Beinhart 1000, Florida 301, and the Wz gene region introgressed from Nicotiana rustica is poorly characterized. In greenhouse environments, host genotypes with QTLs conferring resistance from multiple sources were initially inoculated with an aggressive isolate of race 0 or race 1 of P. nicotianae. The most aggressive isolate was selected after each of six host generations to inoculate the next generation of plants. The race 0 isolate demonstrated a continuous gradual increase in disease severity and percent root rot on all sources of resistance except the genotype K 326 Wz/--, where a large increase in both was observed between generations two and three. Adaptation by the race 0 isolate on Beinhart 1000 represents the first report of adaptation to this genotype by P. nicotianae. The race 1 isolate did not exhibit significant increases in aggressiveness over generations, but also exhibited a large increase in aggressiveness on K 326 Wz/-- between generations 3 and 4. Molecular characterization of isolates recovered during selection was completed using ddRADseq, but no polymorphisms were associated with the observed changes in aggressiveness. The rapid adaptation to Wz resistance and the gradual adaptation to other QTLs highlights the need to study the nature of Wz resistance and for conducting field studies on efficacy of resistance-gene rotation for disease management.

scholarly journals Current Trends in Non-Invasive Imaging of Interactions in the Liver Tumor Microenvironment Mediated by Tumor Metabolism

Cancers ◽  
2021 ◽  
Vol 13 (15) ◽  
pp. 3645
Author(s):  
Isabel Theresa Schobert ◽  
Lynn Jeanette Savic
Keyword(s):  
Tumor Microenvironment ◽  
Liver Cancer ◽  
Cancer Cells ◽  
Imaging Techniques ◽  
Treatment Strategies ◽  
Tumor Metabolism ◽  
Resistance Mechanisms ◽  
Metabolic Reprogramming ◽  
Non Invasive

With the increasing understanding of resistance mechanisms mediated by the metabolic reprogramming in cancer cells, there is a growing clinical interest in imaging technologies that allow for the non-invasive characterization of tumor metabolism and the interactions of cancer cells with the tumor microenvironment (TME) mediated through tumor metabolism. Specifically, tumor glycolysis and subsequent tissue acidosis in the realms of the Warburg effect may promote an immunosuppressive TME, causing a substantial barrier to the clinical efficacy of numerous immuno-oncologic treatments. Thus, imaging the varying individual compositions of the TME may provide a more accurate characterization of the individual tumor. This approach can help to identify the most suitable therapy for each individual patient and design new targeted treatment strategies that disable resistance mechanisms in liver cancer. This review article focuses on non-invasive positron-emission tomography (PET)- and MR-based imaging techniques that aim to visualize the crosstalk between tumor cells and their microenvironment in liver cancer mediated by tumor metabolism.

scholarly journals RNAseq Reveals Differential Gene Expression Contributing to Phytophthora nicotianae Adaptation to Partial Resistance in Tobacco

Agronomy ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 656
Author(s):  
Jing Jin ◽  
Rui Shi ◽  
Ramsey Steven Lewis ◽  
Howard David Shew
Keyword(s):  
Partial Resistance ◽  
Molecular Mechanisms ◽  
Biological Activities ◽  
Effective Means ◽  
Phytophthora Nicotianae ◽  
Economic Losses ◽  
Black Shank ◽  
Differential Gene ◽  
Go Terms

Phytophthora nicotianae is a devastating oomycete plant pathogen with a wide host range. On tobacco, it causes black shank, a disease that can result in severe economic losses. Deployment of host resistance is one of the most effective means of controlling tobacco black shank, but adaptation to complete and partial resistance by P. nicotianae can limit the long-term effectiveness of the resistance. The molecular basis of adaptation to partial resistance is largely unknown. RNAseq was performed on two isolates of P. nicotianae (adapted to either the susceptible tobacco genotype Hicks or the partially resistant genotype K 326 Wz/Wz) to identify differentially expressed genes (DEGs) during their pathogenic interactions with K 326 Wz/Wz and Hicks. Approximately 69% of the up-regulated DEGs were associated with pathogenicity in the K 326 Wz/Wz-adapted isolate when sampled following infection of its adapted host K 326 Wz/Wz. Thirty-one percent of the up-regulated DEGs were associated with pathogenicity in the Hicks-adapted isolate on K 326 Wz/Wz. A broad spectrum of over-represented gene ontology (GO) terms were assigned to down-regulated genes in the Hicks-adapted isolate. In the host, a series of GO terms involved in nuclear biosynthesis processes were assigned to the down-regulated genes in K 326 Wz/Wz inoculated with K 326 Wz/Wz-adapted isolate. This study enhances our understanding of the molecular mechanisms of P. nicotianae adaptation to partial resistance in tobacco by elucidating how the pathogen recruits pathogenicity-associated genes that impact host biological activities.

Characterization of carbapenem resistance mechanisms inKlebsiella pneumoniaeandin vitrosynergy of the colistin–meropenem combination

2014 ◽  
Vol 27 (5) ◽  
pp. 277-282 ◽  
Author(s):  
Lakshmana Gowda Krishnappa ◽  
Mohammed Ali M. Marie ◽  
Yazeed A. Al Sheikh
Keyword(s):  
Carbapenem Resistance ◽  
Resistance Mechanisms

scholarly journals Characterization of resistance mechanisms of Enterobacter cloacae Complex co-resistant to carbapenem and colistin

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Shixing Liu ◽  
Renchi Fang ◽  
Ying Zhang ◽  
Lijiang Chen ◽  
Na Huang ◽  
...  
Keyword(s):  
Lipid A ◽  
Efflux Pump ◽  
Resistance Mechanism ◽  
Carbapenem Resistance ◽  
Enterobacter Cloacae ◽  
Resistance Mechanisms ◽  
Colistin Resistance ◽  
Carbapenem Resistant ◽  
Horizontal Spread

Abstract Background The emergence of carbapenem-resistant and colistin-resistant ECC pose a huge challenge to infection control. The purpose of this study was to clarify the mechanism of the carbapenems and colistin co-resistance in Enterobacter cloacae Complex (ECC) strains. Results This study showed that the mechanisms of carbapenem resistance in this study are: 1. Generating carbapenemase (7 of 19); 2. The production of AmpC or ESBLs combined with decreased expression of out membrane protein (12 of 19). hsp60 sequence analysis suggested 10 of 19 the strains belong to colistin hetero-resistant clusters and the mechanism of colistin resistance is increasing expression of acrA in the efflux pump AcrAB-TolC alone (18 of 19) or accompanied by a decrease of affinity between colistin and outer membrane caused by the modification of lipid A (14 of 19). Moreover, an ECC strain co-harboring plasmid-mediated mcr-4.3 and blaNDM-1 has been found. Conclusions This study suggested that there is no overlap between the resistance mechanism of co-resistant ECC strains to carbapenem and colistin. However, the emergence of strain co-harboring plasmid-mediated resistance genes indicated that ECC is a potential carrier for the horizontal spread of carbapenems and colistin resistance.

Genetic characterization of Phytophthora nicotianae by the analysis of polymorphic regions of the mitochondrial DNA

2011 ◽  
Vol 115 (4-5) ◽  
pp. 432-442 ◽  
Author(s):  
Marco Antonio Mammella ◽  
Santa Olga Cacciola ◽  
Frank Martin ◽  
Leonardo Schena
Keyword(s):  
Mitochondrial Dna ◽  
Genetic Characterization ◽  
Phytophthora Nicotianae

Phytophthora nicotianae var. nicotianae. [Descriptions of Fungi and Bacteria].

1964 ◽  
Author(s):  
G. M. Waterhouse
Keyword(s):  
Geographical Distribution ◽  
Ipomoea Batatas ◽  
Ricinus Communis ◽  
Solanum Melongena ◽  
Pond Water ◽  
Nicotiana Plumbaginifolia ◽  
Phytophthora Nicotianae ◽  
Infested Soil ◽  
Hedera Helix ◽  
Black Shank

Abstract A description is provided for Phytophthora nicotianae var. nicotianae. Information is included on the disease caused by the organism, its transmission, geographical distribution, and hosts. HOSTS: On Nicotiana plumbaginifolia, N. tabaci, N. spp., and on Amaranthus sp., Commelina benghalensis, C. nudiflora, Lycopersicon esculentum, Ricinus communis, Solanum melongena; also on wound inoculated Buxus sp., Daucus carota, Hedera helix, Ipomoea batatas and Trema amboensis. DISEASE: Black shank of tobacco. GEOGRAPHICAL DISTRIBUTION: Africa (Malawi, Mauritius, Uganda); Asia (Ceylon, China, Formosa, India, Indonesia, Japan, Java, Malaya, Philippines, Sumatra); Central America & West Indies (Cuba, Jamaica, Puerto Rico, Santo Domingo, Trinidad); Europe (Bulgaria, Germany, Greece, Italy, Poland, Romania, U.S.S.R.); North America (U.S.A.); South America (Brazil, Colombia, Venezuela). TRANSMISSION: Soil-borne, persisting in soil for at least 4 years between tobacco crops, and not eliminated by a 3 year rotation or a 4 year fallow (41: 409; 39: 126). Tobacco leaves have been used to indicate disease potential in infested soil after serial dilution with sterile soil (42: 408). Spread in contaminated pond water used in overhead irrigation also suspected (43, 1413). Wind-borne spread up to 800 ft. has been recorded (39: 500).

scholarly journals Playing the Whack-A-Mole Game: ERK5 Activation Emerges Among the Resistance Mechanisms to RAF-MEK1/2-ERK1/2- Targeted Therapy

2021 ◽  
Vol 9 ◽  
Author(s):  
Alessandro Tubita ◽  
Ignazia Tusa ◽  
Elisabetta Rovida
Keyword(s):  
Tyrosine Kinases ◽  
Resistance Mechanism ◽  
Resistance Mechanisms ◽  
Mitogen Activated Protein Kinase ◽  
Cancer Therapies ◽  
New Era ◽  
Mitogen Activated Protein ◽  
The Impact ◽  
The Ideal

Molecularly tailored therapies have opened a new era, chronic myeloid leukemia being the ideal example, in the treatment of cancer. However, available therapeutic options are still unsatisfactory in many types of cancer, and often fail due to the occurrence of resistance mechanisms. With regard to small-molecule compounds targeting the components of the Mitogen-Activated Protein Kinase (MAPK) cascade RAF-MEK1/2-ERK1/2, these drugs may result ineffective as a consequence of the activation of compensatory pro-survival/proliferative signals, including receptor tyrosine kinases, PI3K, as well as other components of the MAPK family such as TPL2/COT. The MAPK ERK5 has been identified as a key signaling molecule in the biology of several types of cancer. In this review, we report pieces of evidence regarding the activation of the MEK5-ERK5 pathway as a resistance mechanism to RAF-MEK1/2-ERK1/2 inhibitors. We also highlight the known and possible mechanisms underlying the cross-talks between the ERK1/2 and the ERK5 pathways, the characterization of which is of great importance to maximize, in the future, the impact of RAF-MEK1/2-ERK1/2 targeting. Finally, we emphasize the need of developing additional therapeutically relevant MEK5-ERK5 inhibitors to be used for combined treatments, thus preventing the onset of resistance to cancer therapies relying on RAF-MEK1/2-ERK1/2 inhibitors.

scholarly journals Hyperspectral reflectance for non-invasive early detection of black shank disease in flue-cured tobacco

2021 ◽  
Author(s):  
Austin Hayes ◽  
T. David Reed
Keyword(s):  
Machine Learning ◽  
Broad Band ◽  
Phytophthora Nicotianae ◽  
Hyperspectral Reflectance ◽  
Black Shank ◽  
Linear Discriminant ◽  
Machine Learning Classification ◽  
Band Index ◽  
Intensively Managed ◽  
Reflectance Data

Flue-cured tobacco (Nicotiana tabacum L.) is a high value-per-acre crop that is intensively managed to optimise the yield of high-quality cured leaf. A 15-day study assessed the potential of hyperspectral reflectance data for detecting Phytophthora nicotianae (black shank) incidence in flue-cured tobacco. Hyperspectral reflectance data were taken from a commercial flue-cured tobacco field with a progressing black shank infestation. The effort encompassed two key objectives. First, develop hyperspectral indices and/or machine learning classification models capable of detecting Phytophthora nicotianae (black shank) incidence in flue-cured tobacco. Second, evaluate the model’s ability to separate pre-symptomatic plants from healthy plants. Two hyperspectral indices were developed to detect black shank incidence based on differences in the spectral profiles of asymptomatic flue-cured tobacco plants compared to those with black shank symptoms. While one of the indices is a broad-band index and the other uses narrow wavelength values, the statistical difference between the two indices was not significant and both provided an accurate classification of symptomatic plants. Further analysis of the indices showed significant differences between the index values of healthy and symptomatic plants (α = 0.05). In addition, the indices were able to detect black shank symptoms pre-symptomatically (α = 0.09). Subspace linear discriminant analysis, a machine learning classification, was also used for prediction of black shank incidence with up to 85.7% classification accuracy. The implications of using either spectral indices or machine learning for classification for future black shank research are discussed.

Sign in / Sign up

Export Citation Format

Share Document