Does HIV pre-exposure prophylaxis use lead to a higher incidence of sexually transmitted infections? A case-crossover study of men who have sex with men in Los Angeles, California

BackgroundPre-exposure prophylaxis (PrEP) is an effective method for reducing HIV incidence among at-risk populations. However, concerns exist over the potential for an increase in STIs following PrEP initiation. The objective of this study is to compare the STI incidence before and after PrEP initiation within subjects among a cohort of men who have sex with men in Los Angeles, California.MethodsThe present study used data from patients who initiated PrEP services at the Los Angeles LGBT Center between October 2015 and October 2016 (n=275). A generalised linear mixed model was used with a case-crossover design to determine if there was a significant difference in STIs within subjects 365 days before (before-PrEP period) and 365 days after PrEP initiation (after-PrEP period).ResultsIn a generalised linear mixed model, there were no significant differences in urethral gonorrhoea (P=0.95), rectal gonorrhoea (P=0.33), pharyngeal gonorrhoea (P=0.65) or urethral chlamydia (P=0.71) between periods. There were modest increases in rectal chlamydia (rate ratio (RR) 1.83; 95% CI 1.13 to 2.98; P=0.01) and syphilis diagnoses (RR 2.97; 95% CI 1.23 to 7.18; P=0.02).ConclusionsThere were significant increases in rectal chlamydia and syphilis diagnoses when comparing the periods directly before and after PrEP initiation. However, only 28% of individuals had an increase in STIs between periods. Although risk compensation appears to be present for a segment of PrEP users, the majority of individuals either maintain or decrease their sexual risk following PrEP initiation.

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Loneliness and self-rated physical health among gay, bisexual and other men who have sex with men in Vancouver, Canada

Journal of Epidemiology & Community Health ◽

10.1136/jech-2019-213566 ◽

2020 ◽

pp. jech-2019-213566 ◽

Cited By ~ 1

Author(s):

Megan E Marziali ◽

Heather L Armstrong ◽

Kalysha Closson ◽

Taylor McLinden ◽

Lu Wang ◽

...

Keyword(s):

Physical Health ◽

Mixed Model ◽

Linear Mixed Model ◽

Depressive Symptomatology ◽

Depression Scale ◽

Mediating Effect ◽

Health Study ◽

Computer Assisted ◽

Generalised Linear Mixed Model ◽

Sex With Men

BackgroundDue to stigma and discrimination, gay, bisexual and other men who have sex with men (gbMSM) potentially carry a heightened burden of loneliness. This analysis investigates loneliness among gbMSM and its relationship with self-rated physical health, along with the mediating effect of depression.MethodsParticipants were recruited using respondent-driven sampling into the Momentum Health Study (February 2012–February 2015) with follow-up visits occurring every 6 months until February 2018. Using computer-assisted self-interviews, measures of loneliness were assessed using a 6-item Loneliness Scale for Emotional and Social Loneliness (lonely vs not lonely). Current physical health was self-assessed (poor, fair, good, very good or excellent). A multivariable generalised linear-mixed model with a logit link function was used to examine the relationship between loneliness and self-rated physical health. We further investigated the mediating effect of depressive symptomatology on this relationship via the Hospital Anxiety and Depression Scale.ResultsOf the 770 participants included, we found that 61% (n=471) experienced loneliness at baseline. Of the 674 (88%) who reported good/very good/excellent physical health, 59% (n=391) reported loneliness, compared with 87% (n=80) of those in poor/fair self-rated physical health. After adjustment for confounding, loneliness was associated with poor self-rated physical health (adjusted OR 1.71; 95% CI 1.13 to 2.60). Depressive symptomatology was found to partially mediate this relationship.ConclusionThere may be a need for the integration of social, mental and physical health programming, targeted towards gbMSM, to alleviate the degree of loneliness experienced and its co-occurrence with poor self-rated physical health.

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Efek Diet Rendah Energi Dibandingkan Food Combining Terhadap Perubahan Berat Badan (BB) Pada Orang Dewasa Gemuk

SANITAS : Jurnal Teknologi dan Seni Kesehatan ◽

10.36525/sanitas.2020.1 ◽

2020 ◽

Vol 11 (1) ◽

pp. 1-13

Author(s):

Didit Damayanti ◽

Pritasari Pritasari ◽

Nanang Prayitno ◽

Iskari Ngadiarti ◽

Nils aria Zulfianto

Keyword(s):

Body Weight ◽

Mixed Model ◽

Linear Mixed Model ◽

The Body ◽

Restricted Diet ◽

Significant Difference ◽

Before And After ◽

Iron And Zinc ◽

Calcium Iron ◽

Age Range

Few years ago, food combining a popular weight reducing diet has been promoted and practiced by the public in Indonesia. The objective of this study was to compare the effect of food combining on change in body weight with a calorie reducing diet. We used a crossover experiment study design where 12 healthy free-living subjects (10 women, 2 men), age range 18-21 years old and BMI > 25 kg/m2 were randomly allocated into each groups. Participants were prescribed two diets for 3 consecutive weeks with a 6 week washout period when subjects were instructed free to eat. Diet of 1200 kcal/day for women and 1500 kcal/day for men were prescribed for respondents, whereas the food combining intervention included fruits in the morning and a combination of protein foods with vegetables or carbohydrate foods and vegetables for the other meals. The body weight and nutrients intake were measured before and after each intervention. The result analyzed using a linear mixed model and it showed there was no significant difference (p=0.235) in change in body weight after treatment with the food combining (65.8 kg, CI 95%: 59.7, 71.8) as compared to the calorie restricted diet (66.5 kg, CI: 95%: 60.4, 72.5) at F (1, 10) =1.59. The risk inadequate intake of protein, vitamin B-2, folate, calcium, iron and zinc after followed food combining compared to calorie restricted diet should taking into consideration. The food combining as well as energy reducing diet showed a similar effect on reduction in body weight.

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103 Periodontal Health and Sarcopenia: Cross-Sectional Evidence From A Cohort of 2040 Twin Volunteers

Age and Ageing ◽

10.1093/ageing/afab030.64 ◽

2021 ◽

Vol 50 (Supplement_1) ◽

pp. i12-i42

Author(s):

M B Zazzara ◽

P M Wells ◽

R C E Bowyer ◽

M N Lochlainn ◽

E J Thompson ◽

...

Keyword(s):

Mixed Model ◽

Linear Mixed Model ◽

Frailty Index ◽

Muscle Quality ◽

Low Grade ◽

Periodontal Health ◽

Cross Sectional ◽

Age Related ◽

European Working ◽

Generalised Linear Mixed Model

Abstract Introduction Periodontitis is a chronic inflammatory disease affecting the periodontium, ultimately leading to looseness and/or loss of teeth. Sarcopenia refers to age-related reduction in muscle mass and strength. Similar to periodontitis, chronic low-grade inflammation is thought to play a key role in its development. In addition, both increase in prevalence with advancing age. Despite known associations with other diseases involving a dysregulated inflammatory response, for example rheumatoid arthritis,, the relationship between periodontitis and sarcopenia, and whether they could be driven by similar processes, remains uncertain. The aim of this study was to explore the association between periodontitis and sarcopenia. Methods Observational study of 2040 adult volunteers [age 67.18 (12.17)] enrolled in the TwinsUK cohort study. Presence of tooth mobility and number of teeth lost were used to assess periodontal health. A binary variable was created to define periodontitis. Measurements of muscle strength, muscle quality/quantity and physical performance were used to assess sarcopenia. A categorical variable was created according to the European Working Group on Sarcopenia in Older People (EWGSOP2) consensus, to define sarcopenia (1: probable; 2: positive; 3: severe). Generalised linear mixed model analysis used on complete cases and age-matched (n = 1,288) samples to ascertain associations between periodontitis and sarcopenia. Results No significant association was found between periodontitis and sarcopenia in both the complete cases analysis and age-matched analysis. Results were consistent when analysis was adjusted for potential confounders including body mass index, frailty index, Mini Mental State Examination smoking, nutritional status and educational level. Conclusions This study found no significant association between periodontitis and sarcopenia in a cohort of 2040 adults. Although both periodontitis and sarcopenia have been linked to a dysregulated immune response and demonstrate an increase in prevalence with increasing age, our work is inconclusive due to the plethora of possible aetiopathogenetic pathways.

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Factors influencing the occurrence of high ultimate pH in three muscles of lamb carcasses in Australia

Animal Production Science ◽

10.1071/an14315 ◽

2014 ◽

Vol 54 (10) ◽

pp. 1853 ◽

Cited By ~ 8

Author(s):

N. G. McPhail ◽

J. L. Stark ◽

A. J. Ball ◽

R. D. Warner

Keyword(s):

Mixed Model ◽

Linear Mixed Model ◽

Rectus Femoris ◽

Carcass Weight ◽

Mixed Model Analysis ◽

Factors Influencing ◽

South Wales ◽

Generalised Linear Mixed Model ◽

Processing Plants ◽

Few Data

Chilled lamb meat exported from Australia has, on occasions, been rejected by importing countries due to greening, after only 6 weeks of storage time. Greening is known to be more prevalent in high ultimate pH (pHu) beef meat (>5.9). There are few data available for lamb carcasses in Australia on the occurrence of high pHu meat, which may have an impact on the understanding and control of quality and greening during storage. The aim of this project was to determine the prevalence of, and influencing factors for, high pHu meat in a range of muscle types in lamb carcasses in Australia. Muscle pHu data were collected from a total of 1614 carcasses from 78 lots at four lamb processing plants in Victoria and New South Wales in autumn and spring of 2013. The pHu of the knuckle (rectus femoris), rack (longissimus) and blade (infraspinatus) was measured and data on carcass and lot characteristics were recorded. Data were subjected to restricted maximum likelihood and generalised linear mixed model analysis. The mean pHu of the knuckle, rack and shoulder were 6.06, 5.79 and 6.12 respectively, and the main factors influencing muscle pHu and occurrence of dark-cutting were breed, season, electrical stimulation and carcass weight. Merino lambs had a higher pHu in the blade and knuckle than did other breeds (P < 0.05, P < 0.01 respectively). Lambs processed in autumn had a higher predicted pHu in the blade and knuckle and a higher percentage dark-cutting (DC; pHu >6.0) for those muscles, than did those processed in spring (P < 0.05). Carcasses that had been electrically stimulated had a higher %DC and a higher pHu in all three muscles (P < 0.05). Carcass weight had a significant effect on the pHu of all three muscles (P < 0.001), with heavier carcasses having a lower pHu and lower %DC. The pHu of the rack was not a reliable predictor for the pHu in other muscles of the lamb carcass. In conclusion, the high occurrence of DC in the muscles, particularly the blade and knuckle, suggests that these muscles may be at risk for producing greening in the vacuum bag during storage.

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Size-related boldness is not altered by stomach flushing in a terrestrial salamander

Amphibia-Reptilia ◽

10.1163/15685381-bja10054 ◽

2021 ◽

pp. 1-6

Author(s):

Sebastiano Salvidio ◽

Andrea Costa ◽

Fabrizio Oneto

Keyword(s):

Body Condition ◽

Mixed Model ◽

Linear Mixed Model ◽

Animal Personality ◽

Model Analysis ◽

Mixed Model Analysis ◽

Linear Mixed Model Analysis ◽

Before And After ◽

Trophic Strategy ◽

The Relationship

Abstract Animal personality is a relatively neglected field in amphibian research. In this study we assessed the influence of stomach flushing, a non-lethal technique used in amphibian dietary studies, on the boldness behaviour of the cave salamander Speleomantes strinatii. The time of emergence from a shelter located in an unfamiliar environment (a proxy for individual boldness) was measured in 26 cave salamanders before and after stomach flushing, while 14 non-flushed salamanders were tested as controls. Boldness was a repeatable behaviour for salamanders and larger individuals emerged from their shelter more rapidly than smaller ones. Linear mixed model analysis showed that flushing, sex and body condition had no effect on this behaviour. These findings are promising in the framework of the study of salamander personality. In particular, our results will be useful when exploring the relationship between individual trophic strategy and boldness, aggression or exploration behaviours in terrestrial salamanders.

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Bayesian spatial and spatio-temporal approaches to modelling dengue fever: a systematic review

Epidemiology and Infection ◽

10.1017/s0950268818002807 ◽

2018 ◽

Vol 147 ◽

Cited By ~ 8

Author(s):

A. Aswi ◽

S. M. Cramb ◽

P. Moraga ◽

K. Mengersen

Keyword(s):

Dengue Fever ◽

Random Effects ◽

Mixed Model ◽

Linear Mixed Model ◽

Assessment Tool ◽

Temporal Dynamics ◽

Random Effect ◽

Temperature And Precipitation ◽

Generalised Linear Mixed Model ◽

Spatio Temporal

AbstractDengue fever (DF) is one of the world's most disabling mosquito-borne diseases, with a variety of approaches available to model its spatial and temporal dynamics. This paper aims to identify and compare the different spatial and spatio-temporal Bayesian modelling methods that have been applied to DF and examine influential covariates that have been reportedly associated with the risk of DF. A systematic search was performed in December 2017, using Web of Science, Scopus, ScienceDirect, PubMed, ProQuest and Medline (via Ebscohost) electronic databases. The search was restricted to refereed journal articles published in English from January 2000 to November 2017. Thirty-one articles met the inclusion criteria. Using a modified quality assessment tool, the median quality score across studies was 14/16. The most popular Bayesian statistical approach to dengue modelling was a generalised linear mixed model with spatial random effects described by a conditional autoregressive prior. A limited number of studies included spatio-temporal random effects. Temperature and precipitation were shown to often influence the risk of dengue. Developing spatio-temporal random-effect models, considering other priors, using a dataset that covers an extended time period, and investigating other covariates would help to better understand and control DF transmission.

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How Perceived Sensory Dimensions of Forest Park Are Associated with Stress Restoration in Beijing?

International Journal of Environmental Research and Public Health ◽

10.3390/ijerph19020883 ◽

2022 ◽

Vol 19 (2) ◽

pp. 883

Author(s):

Congying An ◽

Jinglan Liu ◽

Qiaohui Liu ◽

Yuqi Liu ◽

Xiaoli Fan ◽

...

Keyword(s):

Mixed Model ◽

Linear Mixed Model ◽

Individual Characteristics ◽

Forest Park ◽

Positive Effects ◽

Activity Intensity ◽

Visit Frequency ◽

Significant Difference ◽

Visit Duration ◽

Forest Parks

A growing number of studies suggest that the perceived sensory dimensions (PSDs) of green space are associated with stress restoration offered by restorative environment. However, there is little known about PSDs and stress restoration as well as their relationship to forest park. To fill this gap, an on-site questionnaire survey was conducted in three forest parks in Beijing, as a result of which a total number of 432 completed responses were collected and analyzed. The mean values of PSDs were used to represent PSDs of forest park. Using independent sample t-test and ANOVA, this study analyzed the individual characteristics that affected PSDs and stress restoration. Linear mixed model was used to identify the relationship between PSDs and stress restoration of forest park, which took into account the interactions of stress level and PSDs. The results showed that: (1) the perceived degree of PSDs in forest park from strong to weak was Serene, Space, Nature, Rich in species, Prospect, Refuge, Social and Culture, which varied with visitors’ gender, age, level of stress, visit frequency, activity intensity, visit duration and commuting time; (2) in PSDs, Refuge, Serene, Social and Prospect had significantly positive effects on the stress restoration of forest parks (3) there was no significant difference in the effect of the eight PSDs on the stress restoration between different stress groups; (4) stress restoration was influenced by visitors’ gender, age, visit frequency and visit duration. These findings can offer references for managers to improve the health benefits of forest park for visitors, and can enrich the knowledge about PSDs and stress restoration.

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Thalamic white matter macrostructure and subnuclei volumes in Parkinson’s disease depression

npj Parkinson s Disease ◽

10.1038/s41531-021-00270-y ◽

2022 ◽

Vol 8 (1) ◽

Author(s):

R. Bhome ◽

A. Zarkali ◽

G. E. C. Thomas ◽

J. E. Iglesias ◽

J. H. Cole ◽

...

Keyword(s):

Parkinson’S Disease ◽

Parkinson's Disease ◽

White Matter ◽

Mixed Model ◽

Linear Mixed Model ◽

Neural Structure ◽

Generalised Linear Mixed Model ◽

Antidepressant Use ◽

The Relationship

AbstractDepression is a common non-motor feature of Parkinson’s disease (PD) which confers significant morbidity and is challenging to treat. The thalamus is a key component in the basal ganglia-thalamocortical network critical to the pathogenesis of PD and depression but the precise thalamic subnuclei involved in PD depression have not been identified. We performed structural and diffusion-weighted imaging (DWI) on 76 participants with PD to evaluate the relationship between PD depression and grey and white matter thalamic subnuclear changes. We used a thalamic segmentation method to divide the thalamus into its 50 constituent subnuclei (25 each hemisphere). Fixel-based analysis was used to calculate mean fibre cross-section (FC) for white matter tracts connected to each subnucleus. We assessed volume and FC at baseline and 14–20 months follow-up. A generalised linear mixed model was used to evaluate the relationship between depression, subnuclei volume and mean FC for each thalamic subnucleus. We found that depression scores in PD were associated with lower right pulvinar anterior (PuA) subnucleus volume. Antidepressant use was associated with higher right PuA volume suggesting a possible protective effect of treatment. After follow-up, depression scores were associated with reduced white matter tract macrostructure across almost all tracts connected to thalamic subnuclei. In conclusion, our work implicates the right PuA as a relevant neural structure in PD depression and future work should evaluate its potential as a therapeutic target for PD depression.

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The SARS-CoV-2 Alpha variant is associated with increased clinical severity of disease

10.1101/2021.08.17.21260128 ◽

2021 ◽

Author(s):

David J Pascall ◽

Guy Mollett ◽

Rachel Blacow ◽

Naomi Bulteel ◽

Robyn Campbell ◽

...

Keyword(s):

Growth Rate ◽

Cohort Study ◽

Mixed Model ◽

Linear Mixed Model ◽

Transmission Rate ◽

Severe Disease ◽

Positive Association ◽

Clinical Severity ◽

Generalised Linear Mixed Model ◽

The Impact

Background The Alpha (B.1.1.7) SARS-CoV-2 variant of concern has been associated with increased transmission and increased 28-day mortality. We aimed to investigate the impact of infection on clinical severity of illness, including the need for oxygen or ventilation in a national cohort study. Methods In this prospective clinical cohort study, 1475 SARS-CoV-2 sequences were obtained from patients infected in Scotland, UK between the 1st November 2020 and 30th January 2021 and matched to clinical outcomes as the lineage became dominant in Scotland. We modelled the association between B.1.1.7 infection and severe disease using a cumulative generalised linear mixed model employing a 4-point scale of maximum severity based on requirement of respiratory support at 28 days. We also estimated the growth rate of B.1.1.7-associated infections as it emerged in Scotland using a phylogenetic exponential growth rate population model. Results The B.1.1.7 lineage was responsible for a third wave of SARS-CoV-2 infection in Scotland in association with a transmission rate 5-fold higher than the preceding second wave B.1.177 lineage. Of 1475 patients, 364 were infected with B.1.1.7, 1030 with B.1.177 and 81 with other lineages. Our analysis found a positive association between increased clinical severity and lineage (B.1.1.7 versus non-B.1.1.7; cumulative odds ratio: 1.40, 95% CI: 1.02, 1.93). Viral load was higher in B.1.1.7 samples than in non-B.1.1.7 samples, as measured by cycle threshold (Ct) value (mean Ct change: -2.46, 95% CI: -4.22, -0.70). Conclusions The B.1.1.7 lineage was associated with more severe clinical disease in Scottish patients than co-circulating lineages.

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The nasopharyngeal, ruminal, and vaginal microbiota and the core taxa shared across these microbiomes in virgin yearling heifers exposed to divergent in utero nutrition during their first trimester of gestation and in pregnant beef heifers in response to mineral supplementation

10.1101/2021.06.03.446997 ◽

2021 ◽

Author(s):

Samat Amat ◽

Devin B Holman ◽

Kaycie Schmidt ◽

Ana Clara B Menezes ◽

Friederike Baumgaertner ◽

...

Keyword(s):

Mixed Model ◽

Linear Mixed Model ◽

First Trimester ◽

Nervous System Development ◽

Vaginal Microbiota ◽

Rrna Gene ◽

Beef Heifers ◽

Mineral Supplement ◽

Alpha And Beta Diversity ◽

Significant Difference

Emerging evidence has indicated that microbial transmission from the bovine dam to her fetus may take place before birth, and that the maternal microbiota during pregnancy modulates programming of fetal metabolic and nervous system development, highlighting the potential and extended role of the maternal microbiome in calf health and development. In the present study, we characterized the nasopharyngeal, ruminal and vaginal microbiota from two cohorts of beef heifers managed at the same location: 1) virgin yearling heifers (9 months old) born from dams received gestational diets which resulted in low (LG, n = 22) or medium (MG, n = 23) weight gain during the first 84 days of gestation; and 2) pregnant replacement heifers that received a vitamin and mineral supplement (VTM, n = 17) or not (Control, n = 15) during the first 6 months of gestation. Nasopharyngeal and vaginal swabs as well as ruminal fluid were collected from both cohorts and the microbiota of each sample was assessed using 16S rRNA gene sequencing. In addition to the comparison between treatment groups within each cohort, the similarity of the microbiota of the three sample types were evaluated, and shared taxa amongst these communities were identified. The bacterial genera present in the rumen and vagina that can influence methanogenic archaeal genera were predicted using a stepwise-selected generalized linear mixed model. No significant difference was observed in the alpha and beta diversity in any of the nasopharyngeal, ruminal and vaginal microbiota between LG and MG offspring virgin heifers, or between the control and VTM pregnant heifers (p > 0.05). Subtle compositional changes in the vaginal microbiota in yearling heifers, and in the nasopharyngeal and ruminal microbiota of pregnant heifers were detected in response to treatments. Forty-one archaeal and bacterial OTUs were shared by over 60% of all samples from both virgin and pregnant heifers. Two taxa within the Methanobrevibacter genus were identified as core taxa and this genus was more relatively abundant in pregnant heifers compared to virgin heifers. Among the 25 top genera, Prevotella and Prevotella UCG-003 (negative) and Christensenellaceae R-7 group (positive) were predicted to have a significant effect on ruminal Methanobrevibacter spp. The results of this study indicate that there is little impact of divergent gestational nutrition during the first trimester on the calf microbiome at 9 months postnatal, and that VTM supplementation during pregnancy may not alter the maternal microbiome. This study provides evidence that there are several microbial taxa, including methanogenic archaea, that are shared across the respiratory, gastrointestinal, and reproductive tracts, suggesting the need for a holistic evaluation of the bovine microbiota when considering potential maternal sources for seeding calves with pioneer microbiota.

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