scholarly journals siRNA-dependent Gene Silencing of EVI1 Decreased Cell Proliferation in MKN45 Cells

Cell Biology ◽  
2020 ◽  
Vol 8 (2) ◽  
pp. 27
Author(s):  
Yuri Na ◽  
Hyejun Hwang ◽  
Jaehyuk Cho ◽  
Woo Rin Lee
Blood ◽  
2008 ◽  
Vol 112 (11) ◽  
pp. 2951-2951
Author(s):  
Raoul Tibes ◽  
Ashish Choudhary ◽  
Amanda Henrichs ◽  
Sadia Guled ◽  
Irma Monzon ◽  
...  

Abstract In order to improve treatment strategies for Acute Myeloid Leukemia (AML), we adapted a functional genomics approach using RNAi screening to identify molecular targets that are vital to the growth of AML. Herein we report the first large-scale kinome gene silencing screen in AML. A high throughput RNAi screen was developed for the efficient siRNA transfection of AML cell lines. Eight commercially available cationic lipid-based transfection reagents were tested for their ability to transfect several AML cell lines with siRNA. These extensive transfection optimization experiments identified two AML cells lines TF-1 and ML4 with up to 95–100 and 70–75% transfection efficiency respectively. Two independent replicate kinome screens were performed on both cell lines using a siRNA library targeting 572 kinase genes with 2 siRNA/gene. At 96 hours post transfection, cell proliferation was assessed and the B-score method was used to background correct and analyze the screening data. Several siRNA to specific kinases were identified that significantly inhibit cell proliferation of up to ~40–88%. Hits were defined at two thresholds: siRNA having a B-score of <−2 providing a statistically significance of p<0.05 (confidence of > 95%) and a cutoff B-score of <−1.5 providing greater than 87% confidence for each siRNA hit. Two different kinases (2 siRNA/gene/screen) were identified as major growth regulating kinases in TF1 cells with all 4 siRNA/gene having a B-score <−2. For two additional kinases, 3/4 siRNA for each gene had a Bscore <−2. Expanding the cutoff to a B-score <−1.5 three further kinases were targeted by at least 3/4 siRNA/gene. Similar analysis using the same criteria for ML4 cells identified one kinase targeted by 3/4 siRNA at a B-score <−2, seven kinases with 2/4 siRNA <−2 and two kinases with 3/4 siRNA/gene at a B-score of <−1.5. Common hits for both cell lines with at least 6/8 siRNA per gene from 4 screens performing at a B-score <−2 identified two kinases, one of them PLK1. Applying a B-score threshold of <−1.5, we identified five kinases for which at least 5/8 siRNA/gene from 4 screens met these criteria. Kinases/genes will be presented at the meeting.Confirmation of gene silencing and validation of growth response is currently underway for a subset of genes. Among the strongest hits are siRNA targeting PLK1, as well as siRNA targeting three other kinase-genes involved in regulating cell cycle progression and checkpoints and gene ontology (GO) analysis showed enrichment in cell cycle and cell cycle-checkpoint processes. Inhibitors against PLK1 and other kinase hits identified in the screen are in (pre)-clinical development and if confirmed, our experiments provide a strong rational to test these in AML. The application of RNAi based screening is useful in the identification of genes important in AML proliferation, which could serve as targets for therapeutic intervention and guide AML drug development. Furthermore, results from these types of functional genomics approaches hold promise to be rapidly translated into clinical application.


2015 ◽  
Vol 34 (3) ◽  
pp. 1510-1516 ◽  
Author(s):  
WEIYI HUANG ◽  
WEIQING ZHONG ◽  
JUN XU ◽  
BENHUA SU ◽  
GUANGHUI HUANG ◽  
...  

2017 ◽  
Vol 42 (5) ◽  
pp. 1769-1778 ◽  
Author(s):  
Ran Ao ◽  
Lin Guan ◽  
Ying Wang ◽  
Jia-Ni Wang

Background/Aims: This paper aims to explore the effects of pyruvate kinase (PK) M2 gene silencing on the proliferation and apoptosis of colorectal cancer (CRC) LS-147T and SW620 cells. Methods: CRC LS-147T and SW620 cells highly expressing PKM2 were randomly selected by quantitative real-time polymerase chain reaction (qRT-PCR) and then assigned into the blank (no transfection), PKM2-shRNA (transfection with shRNA) and empty plasmid (transfection with empty plasmid) groups. Immunofluorescence was applied to detect PKM2 protein expression. qRT-PCR and Western blotting were conducted to assess mRNA and protein expression of PKM2, p53 and p21. The cell counting kit-8 (CCK-8) assay was used to assess cell proliferation. Flow cytometry was used to assess the cell cycle and apoptosis rate, and a senescence-associated β-galactosidase staining kit was used to assess cell senescence. Results: PKM2 exhibited high mRNA expression among CRC LS-147T and SW620 cells with remarkable protein expression noted in the cytoplasm and nucleus. The PKM2-shRNA group exhibited reduced PKM2 mRNA and protein expression, whereas p53 and p21 expression was increased compared with the blank and empty plasmid groups. Cell proliferation in PKM2-shRNA cells decreased significantly compared with the blank group and empty plasmid groups. The PKM2-shRNA group exhibited more cells in the G1 phase and fewer cells in the G2/M phase compared with the blank and empty plasmid groups. In addition, the PKM2-shRNA group exhibited significantly increased apoptosis rates and β-galactosidase activity compared with the blank and empty plasmid groups. Conclusion: Our study demonstrates that PKM2 gene silencing suppresses proliferation and promotes apoptosis in LS-147T and SW620 cells.


2013 ◽  
Vol 32 (6) ◽  
pp. 608-612
Author(s):  
Li-ming ZHAO ◽  
Guang-yuan SUN ◽  
Li-rong LOU ◽  
Liang-zhe WANG ◽  
Zheng FANG ◽  
...  

Blood ◽  
2004 ◽  
Vol 104 (11) ◽  
pp. 3368-3368
Author(s):  
Tae Kon Kim ◽  
Martin Carroll ◽  
Alan M. Gewirtz

Abstract Signal transducer and activator of transcription (STAT) family proteins play crucial roles in the cytokine signaling pathways which regulate survival and proliferation of normal and malignant hematopoietic cells. The STAT proteins which regulate myeloid leukemia cell survival and proliferation remain ill defined. STAT3, for example, has been reported to be constitutively activated in acute myeloid leukemia (AML) cells but its function in these cells is not clear. In order to better understand the role of STAT3 in AML biology, we studied its expression, activation, and requirement for cell growth in several AML cell lines, and in primary patient material. We first confirmed the activation of STAT3 in primary AML cells by western blotting. An analysis of 5 AML patient samples revealed elevated levels of constitutive STAT3 phosphorylation in 4 of 5 samples. In addition, two AML cell lines (MOLM-14, KG-1) displayed constitutive STAT3 activation. In order to evalute the functional significance of STAT3 overexpression in AML cells, we synthesized a siRNA that had been reported effective in silencing STAT3 expression. The siRNA were delivered to MOLM-14 cells using an amaxa nucleoporation device (amaxa, Inc. Gaithersburg, MD) (Program O-17/Solution V). In treated cells, STAT3 expression decreased 72%±1% [n=5] but in a non-dose related manner suggesting that “off-target” gene silencing, or other mechanisms unrelated to target gene silencing might have played a role squelching STAT3 expression. In contrast, nucleofection of MOLM-14 cells with an antisense oligodeoxynucleotide (AS ODN) corresponding to the antisense sequence of the siRNA duplex, decreased STAT3 expression 96%±1% [n=5] compared to control treated cells. Importantly, inhibition was dose dependent and sequence specific. Cell proliferation was also inhibited in the AS ODN treated cells (82%±7% at 24 hour, 92%±2% at 48 hour, 91%±4% at 72 hour [n=3]) in comparison to control treated cells. To determine if these results were unique to a specific cell line, we nucleofected AS ODN into KG-1 cells (amaxa, Program T-27/Solution V). Again, the AS ODN decreased STAT3 expression 90% compared to control treated cells and inhibited cell proliferation in a manner similar to that obtained for MOLM-14 cells (72% at 24 hour, 78% at 48 hour, 79% at 72 hour) in comparison to control treated cells. To determine if STAT3 is necessary for survival of primary AML cells, cells from 5 patients (four frozen leukapheresis samples-FAB Classification M1, M4, M4, M5, one fresh peripheral blood sample-FAB Classification M5) were nucleofected (amaxa, Program U-15/Solution V) with the STAT3 AS or control ODN and incubated on the EBM-2(Endothelial Basal Medium, CABREX®) for 72 hours. Primary AML cells treated with STAT3 AS ODN showed a ~50–80% decrease in survival compared to control ODN treated cells. These results demonstrate that STAT3 plays an important role in the survival and proliferation of acute myeloid leukemia cells. Accordingly, STAT3 appears to be a legitimate target for the treatment of AML. These results also demonstrate that an effectively delivered, appropriately targeted, AS ODN has the ability to silence its targeted gene’s expression with a specificity and an efficiency equivalent to, or in some cases better, than any highly active siRNA.


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