Classification of Soil Texture Classes by Using Soil Visual near Infrared Spectroscopy and Factorial Discriminant Analysis Techniques

2005 ◽  
Vol 13 (4) ◽  
pp. 231-240 ◽  
Author(s):  
A.M. Mouazen ◽  
R. Karoui ◽  
J. De Baerdemaeker ◽  
H. Ramon
Keyword(s):  
Soil Properties ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Soil Samples ◽  
Data Sets ◽  
Validation Data ◽  
Light Reflectance ◽  
Validation Set ◽  
Soil Groups

Texture is one of the main properties affecting the accuracy of visible (vis) and near infrared (NIR) spectroscopy during on-the-go measurement of soil properties. Classification of soil spectra into predefined texture classes is expected to increase the accuracy of measurement of other soil properties using separate groups of calibration models, each developed for one texture class. A mobile, fibre-type, vis-NIR spectrophotometer (Zeiss Corona 1.7 vis-NIR fibre), with a light reflectance measurement range of 306.5–1710.9 nm was used to measure the light reflectance from fresh soil samples collected from many fields in Belgium and northern France. A total of 365 soil samples were classified into four different texture classes, namely, coarse sandy, fine sandy, loamy and clayey soils. The factorial discriminant analysis (FDA) was applied on the first five principal components obtained from the principal component analysis performed on the vis-NIR spectra in order to classify soils into the four assigned groups. Correct classification (CC) of 85.7% and 81.8% was observed for the calibration and validation data sets, respectively. However, validation of the vis-NIR-FDA technique on the validation set showed poor discrimination between the coarse sandy and fine sandy soil groups, with a great deal of overlapping. Therefore, the soil groups were reduced to three groups by combining the coarse sandy and fine sandy soil groups into one group and FDA was applied again. A better classification was obtained with CC of 89.9 and 85.1% for the calibration and validation data sets, respectively. However, the CC for the sand group in the validation set was rather small (46.7%), which was attributed to the small sample number and poor correlation between sand fraction and vis-NIR spectroscopy. It was concluded that vis-NIR-FDA is an efficient technique to classify soil into three main groups of sandy (light soils), loamy (medium soils) and clayey (heavy soils). Additional samples from the sandy and clayey groups should be included to improve the accuracy of the vis-NIR-FDA classification models to be used for an on-the-go vis-NIR measurement system of soil properties.

scholarly journals Feasibility of Using VIS/NIR Spectroscopy and Multivariate Analysis for Pesticide Residue Detection in Tomatoes

Processes ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 196
Author(s):  
Araz Soltani Nazarloo ◽  
Vali Rasooli Sharabiani ◽  
Yousef Abbaspour Gilandeh ◽  
Ebrahim Taghinezhad ◽  
Mariusz Szymanek ◽  
...  
Keyword(s):  
Near Infrared ◽  
Cross Validation ◽  
Low Cost ◽  
Moving Average ◽  
Nir Spectroscopy ◽  
Control Treatment ◽  
Residue Detection ◽  
Non Destructive ◽  
Reflective Spectroscopy

The purpose of this work was to investigate the detection of the pesticide residual (profenofos) in tomatoes by using visible/near-infrared spectroscopy. Therefore, the experiments were performed on 180 tomato samples with different percentages of profenofos pesticide (higher and lower values than the maximum residual limit (MRL)) as compared to the control (no pesticide). VIS/near infrared (NIR) spectral data from pesticide solution and non-pesticide tomato samples (used as control treatment) impregnated with different concentrations of pesticide in the range of 400 to 1050 nm were recorded by a spectrometer. For classification of tomatoes with pesticide content at lower and higher levels of MRL as healthy and unhealthy samples, we used different spectral pre-processing methods with partial least squares discriminant analysis (PLS-DA) models. The Smoothing Moving Average pre-processing method with the standard error of cross validation (SECV) = 4.2767 was selected as the best model for this study. In addition, in the calibration and prediction sets, the percentages of total correctly classified samples were 90 and 91.66%, respectively. Therefore, it can be concluded that reflective spectroscopy (VIS/NIR) can be used as a non-destructive, low-cost, and rapid technique to control the health of tomatoes impregnated with profenofos pesticide.

Estimation of soil organic matter using proximal and satellite sensors after a wildfire in Mediterranean Croatia

2021 ◽  
Author(s):  
Iva Hrelja ◽  
Ivana Šestak ◽  
Igor Bogunović
Keyword(s):  
Organic Matter ◽  
Soil Organic Matter ◽  
Spectral Data ◽  
Near Infrared ◽  
Mean Squared Error ◽  
Nir Spectroscopy ◽  
Soil Samples ◽  
Least Squares Regression ◽  
Macro Scale ◽  
Sentinel 2

<p>Spectral data obtained from optical spaceborne sensors are being recognized as a valuable source of data that show promising results in assessing soil properties on medium and macro scale. Combining this technique with laboratory Visible-Near Infrared (VIS-NIR) spectroscopy methods can be an effective approach to perform robust research on plot scale to determine wildfire impact on soil organic matter (SOM) immediately after the fire. Therefore, the objective of this study was to assess the ability of Sentinel-2 superspectral data in estimating post-fire SOM content and comparison with the results acquired with laboratory VIS-NIR spectroscopy.</p><p>The study is performed in Mediterranean Croatia (44° 05’ N; 15° 22’ E; 72 m a.s.l.), on approximately 15 ha of fire affected mixed <em>Quercus ssp.</em> and <em>Juniperus ssp.</em> forest on Cambisols. A total of 80 soil samples (0-5 cm depth) were collected and geolocated on August 22<sup>nd</sup> 2019, two days after a medium to high severity wildfire. The samples were taken to the laboratory where soil organic carbon (SOC) content was determined via dry combustion method with a CHNS analyzer. SOM was subsequently calculated by using a conversion factor of 1.724. Laboratory soil spectral measurements were carried out using a portable spectroradiometer (350-1050 nm) on all collected soil samples. Two Sentinel-2 images were downloaded from ESAs Scientific Open Access Hub according to the closest dates of field sampling, namely August 31<sup>st</sup> and September 5<sup>th </sup>2019, each containing eight VIS-NIR and two SWIR (Short-Wave Infrared) bands which were extracted from bare soil pixels using SNAP software. Partial least squares regression (PLSR) model based on the pre-processed spectral data was used for SOM estimation on both datasets. Spectral reflectance data were used as predictors and SOM content was used as a response variable. The accuracy of the models was determined via Root Mean Squared Error of Prediction (RMSE<sub>p</sub>) and Ratio of Performance to Deviation (RPD) after full cross-validation of the calibration datasets.</p><p>The average post-fire SOM content was 9.63%, ranging from 5.46% minimum to 23.89% maximum. Models obtained from both datasets showed low RMSE<sub>p </sub>(Spectroscopy dataset RMSE<sub>p</sub> = 1.91; Sentinel-2 dataset RMSE<sub>p</sub> = 0.99). RPD values indicated very good predictions for both datasets (Spectrospcopy dataset RPD = 2.72; Sentinel-2 dataset RPD = 2.22). Laboratory spectroscopy method with higher spectral resolution provided more accurate results. Nonetheless, spaceborne method also showed promising results in the analysis and monitoring of SOM in post-burn period.</p><p><strong>Keywords:</strong> remote sensing, soil spectroscopy, wildfires, soil organic matter</p><p><strong>Acknowledgment: </strong>This work was supported by the Croatian Science Foundation through the project "Soil erosion and degradation in Croatia" (UIP-2017-05-7834) (SEDCRO). Aleksandra Perčin is acknowledged for her cooperation during the laboratory work.</p>

Focusing near Infrared Spectroscopy on the Business Objectives of Modern Pharmaceutical Production

1998 ◽  
Vol 6 (A) ◽  
pp. A13-A19 ◽  
Author(s):  
T.G. Axon ◽  
R. Brown ◽  
S.V. Hammond ◽  
S.J. Maris ◽  
F. Ting
Keyword(s):  
High Performance ◽  
Near Infrared ◽  
Real Life ◽  
Nir Spectroscopy ◽  
Raw Material ◽  
Develop Model ◽  
Data Sets ◽  
Total Quality ◽  
Model Free ◽  
Pharmaceutical Production

The early use of near infrared (NIR) spectroscopy in the pharmaceutical industry was for raw material identification, later moving on to some conventional “calibrations” for various ingredients in a variety of sample types. The approach throughout this development process has always been “conventional” with one measurement by NIR directly replacing some other slower method, be it Mid-IR identification, or determinations by Karl Fischer, high performance liquid chromatography (HPLC)etc. A significant change in approach was demonstrated by Plugge and Van der Vlies1 in 1993, where a qualitative system was used to provide “quantitative like” answers for potency of a drug substance. Following on from that key paper, there has been a realisation that the qualitative analysis ability of NIR, has the potential to be a powerful tool for process investigation, control and validation. The final step has been to develop “model free” approaches, that consider individual data sets as unique systems, and present the opportunity for NIR to escape the shackles of “calibration” in one form or another. The use of qualitative, or model free, approaches to NIR spectroscopy provides an effective tool for satisfying many of the demands of modern pharmaceutical production. “Straight through production,” “right first time,” “short cycle time” and “total quality management” philosophies can be realised. Eventually the prospect of parametric release may be materialised with a strong contribution from NIR spectroscopy. This paper will illustrate the above points with some real life examles.

Ability of Vis-PIR spectroscopy to monitor changes in organic carbon of loamy soils at two depths

2021 ◽  
Author(s):  
Hayfa Zayani ◽  
Youssef Fouad ◽  
Didier Michot ◽  
Zeineb Kassouk ◽  
Zohra Lili-Chabaane ◽  
...  
Keyword(s):  
Organic Carbon ◽  
Near Infrared ◽  
Full Range ◽  
Nir Spectroscopy ◽  
Soil Samples ◽  
Calibration Data ◽  
Least Squares Regression ◽  
Data Set ◽  
Soil Carbon Stocks ◽  
The Mean

<p>Visible-Near Infrared (Vis-NIR) spectroscopy has proven its efficiency in predicting several soil properties such as soil organic carbon (SOC) content. In this preliminary study, we explored the ability of Vis-NIR to assess the temporal evolution of SOC content. Soil samples were collected in a watershed (ORE AgrHys), located in Brittany (Western France). Two sampling campaigns were carried out 5 years apart: in 2013, 198 soil samples were collected respectively at two depths (0-15 and 15-25 cm) over an area of 1200 ha including different land use and land cover; in 2018, 111 sampling points out of 198 of 2013 were selected and soil samples were collected from the same two depths. Whole samples were analyzed for their SOC content and were scanned for their reflectance spectrum. Spectral information was acquired from samples sieved at 2 mm fraction and oven dried at 40°C, 24h prior to spectra acquisition, with a full range Vis-NIR spectroradiometer ASD Fieldspec®3. Data set of 2013 was used to calibrate the SOC content prediction model by the mean of Partial Least Squares Regression (PLSR). Data set of 2018 was therefore used as test set. Our results showed that the variation ∆SOC<sub>obs</sub><sub></sub>obtained from observed values in 2013 and 2018 (∆SOC<sub>obs</sub> = Observed SOC (2018) - Observed SOC (2013)) is ranging from 0.1 to 25.9 g/kg. Moreover, our results showed that the prediction performance of the calibrated model was improved by including 11 spectra of 2018 in the 2013 calibration data set (R²= 0.87, RMSE = 5.1 g/kg and RPD = 1.92). Furthermore, the comparison of predicted and observed ∆SOC between 2018 and 2013 showed that 69% of the variations were of the same sign, either positive or negative. For the remaining 31%, the variations were of opposite signs but concerned mainly samples for which ∆SOCobs is less than 1,5 g/kg. These results reveal that Vis-NIR spectroscopy was potentially appropriate to detect variations of SOC content and are encouraging to further explore Vis-NIR spectroscopy to detect changes in soil carbon stocks.</p>

The Effect of Multiplicative Scatter Correction (MSC) and Linearity Improvement in NIR Spectroscopy

1988 ◽  
Vol 42 (7) ◽  
pp. 1273-1284 ◽  
Author(s):  
Tomas Isaksson ◽  
Tormod Næs
Keyword(s):  
Near Infrared ◽  
Scatter Correction ◽  
Principal Component Regression ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Data Sets ◽  
Prediction Errors ◽  
Regression Methods ◽  
Multiplicative Scatter Correction ◽  
Linearity Improvement

Near-infrared (NIR) reflectance spectra of five different food products were measured. The spectra were transformed by multiplicative scatter correction (MSC). Principal component regression (PCR) was performed, on both scatter-corrected and uncorrected spectra. Calibration and prediction were performed for four food constituents: protein, fat, water, and carbohydrates. All regressions gave lower prediction errors (7–68% improvement) by the use of MSC spectra than by the use of uncorrected absorbance spectra. One of these data sets was studied in more detail to clarify the effects of the MSC, by using PCR score, residual, and leverage plots. The improvement by using nonlinear regression methods is indicated.

scholarly journals Estimation of Secondary Soil Properties by Fusion of Laboratory and On-Line Measured Vis–NIR Spectra

2019 ◽  
Vol 11 (23) ◽  
pp. 2819 ◽  
Author(s):  
Muhammad Abdul Munnaf ◽  
Said Nawar ◽  
Abdul Mounem Mouazen
Keyword(s):  
Soil Properties ◽  
Real Time ◽  
Measurement Accuracy ◽  
Near Infrared ◽  
Diffuse Reflectance Spectroscopy ◽  
Spectral Response ◽  
Nir Spectroscopy ◽  
Accurate Estimation ◽  
Line Measurement ◽  
On Line

Visible and near infrared (vis–NIR) diffuse reflectance spectroscopy has made invaluable contributions to the accurate estimation of soil properties having direct and indirect spectral responses in NIR spectroscopy with measurements made in laboratory, in situ or using on-line (while the sensor is moving) platforms. Measurement accuracies vary with measurement type, for example, accuracy is higher for laboratory than on-line modes. On-line measurement accuracy deteriorates further for secondary (having indirect spectral response) soil properties. Therefore, the aim of this study is to improve on-line measurement accuracy of secondary properties by fusion of laboratory and on-line scanned spectra. Six arable fields were scanned using an on-line sensing platform coupled with a vis–NIR spectrophotometer (CompactSpec by Tec5 Technology for spectroscopy, Germany), with a spectral range of 305–1700 nm. A total of 138 soil samples were collected and used to develop five calibration models: (i) standard, using 100 laboratory scanned samples; (ii) hybrid-1, using 75 laboratory and 25 on-line samples; (iii) hybrid-2, using 50 laboratory and 50 on-line samples; (iv) hybrid-3, using 25 laboratory and 75 on-line samples, and (v) real-time using 100 on-line samples. Partial least squares regression (PLSR) models were developed for soil pH, available potassium (K), magnesium (Mg), calcium (Ca), and sodium (Na) and quality of models were validated using an independent prediction dataset (38 samples). Validation results showed that the standard models with laboratory scanned spectra provided poor to moderate accuracy for on-line prediction, and the hybrid-3 and real-time models provided the best prediction results, although hybrid-2 model with 50% on-line spectra provided equally good results for all properties except for pH and Na. These results suggest that either the real-time model with exclusively on-line spectra or the hybrid model with fusion up to 50% (except for pH and Na) and 75% on-line scanned spectra allows significant improvement of on-line prediction accuracy for secondary soil properties using vis–NIR spectroscopy.

Classification of Chinese Soybean Paste by Fourier Transform Near-Infrared (FT-NIR) Spectroscopy and Different Supervised Pattern Recognition

2011 ◽  
Vol 5 (4) ◽  
pp. 928-934 ◽  
Author(s):  
Hui Jiang ◽  
Guohai Liu ◽  
Xiahong Xiao ◽  
Shuang Yu ◽  
Congli Mei ◽  
...  
Keyword(s):  
Pattern Recognition ◽  
Fourier Transform ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Soybean Paste

Classification of Automobile Lubricant by Near-Infrared Spectroscopy Combined with Machine Classification

2011 ◽  
Vol 460-461 ◽  
pp. 667-672
Author(s):  
Yun Zhao ◽  
Xing Xu ◽  
Yong He
Keyword(s):  
Near Infrared ◽  
Prediction Models ◽  
Nir Spectroscopy ◽  
Partial Least Square ◽  
Least Square ◽  
Support Vector ◽  
Training Set ◽  
Test Set ◽  
Svm Model

The main objective of this paper is to classify four kinds of automobile lubricant by near-infrared (NIR) spectral technology and to observe whether NIR spectroscopy could be used for predicting water content. Principle component analysis (PCA) was applied to reduce the information from the spectral data and first two PCs were used to cluster the samples. Partial least square (PLS), least square support vector machine (LS-SVM), and Gaussian processes classification (GPC) were employed to develop prediction models. There were 120 samples for training set and test set. Two LS-SVM models with first five PCs and first six PCs were built, respectively, and accuracy of the model with five PCs is adequate with less calculation. The results from the experiment indicate that the LS-SVM model outperforms the PLS model and GPC model outperforms the LS-SVM model.

scholarly journals Evaluation of Optimized Preprocessing and Modeling Algorithms for Prediction of Soil Properties Using VIS-NIR Spectroscopy

Sensors ◽  
2021 ◽  
Vol 21 (20) ◽  
pp. 6745
Author(s):  
Rebecca-Jo Vestergaard ◽  
Hiteshkumar Bhogilal Vasava ◽  
Doug Aspinall ◽  
Songchao Chen ◽  
Adam Gillespie ◽  
...  
Keyword(s):  
Soil Properties ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Fine Sand ◽  
Detailed Comparison ◽  
Coarse Sand ◽  
Partial Least Square ◽  
Least Square ◽  
Partial Least Square Regression ◽  
Modeling Approaches

The absorbance spectra for air-dried and ground soil samples from Ontario, Canada were collected in the visible and near-infrared (VIS-NIR) region from 343 to 2200 nm. The study examined thirteen combination of six preprocessing (1st derivative, 2nd derivative, Savitzky-Golay, Gap, SNV and Detrend) method included in ‘prospectr’ R package along with four modeling approaches: partial least square regression (PLSR), cubist, random forest (RF), and extreme learning machine (ELM) for prediction of the soil organic matter (SOM). The 1st derivative + gap, 2nd derivative + gap and standard normal variance (SNV) were the best preprocessing algorithms. Thus, only these three preprocessing algorithms along with four modeling approaches were used for prediction of soil pH, electrical conductively (EC), %sand, %silt, %clay, %very coarse sand (VCS), %coarse sand (CS), %medium sand (ms) and %fine sand (fs). The results showed that OM, pH, %sand, %silt and %CS were all predicted with confidence (R2 > 0.60) and the combination of 1st derivative + gap and RF gained the best performance. A detailed comparison of the preprocessing and modeling algorithms for various soil properties in this study demonstrate that for better prediction of soil properties using VIS-NIR spectroscopy requires different preprocessing and modeling algorithms. However, in general RF and 1st derivative + gap can be labeled at the best combination of preprocessing and modelling algorithms.

scholarly journals Rapid Authentication of 100% Italian Durum Wheat Pasta by FT-NIR Spectroscopy Combined with Chemometric Tools

Foods ◽  
2020 ◽  
Vol 9 (11) ◽  
pp. 1551
Author(s):  
Annalisa De Girolamo ◽  
Salvatore Cervellieri ◽  
Erminia Mancini ◽  
Michelangelo Pascale ◽  
Antonio Francesco Logrieco ◽  
...  
Keyword(s):  
Durum Wheat ◽  
Near Infrared ◽  
Nir Spectroscopy ◽  
Principal Component ◽  
Linear Discriminant ◽  
Production And Consumption ◽  
High Prediction ◽  
Validation Set ◽  
Performance Results ◽  
Prediction Capability

Italy is the country with the largest durum wheat pasta production and consumption. The mandatory labelling for pasta indicating the country of origin of wheat has made consumers more aware about the consumed pasta products and is influencing their choice towards 100% Italian wheat pasta. This aspect highlights the need to promote the use of domestic wheat as well as to develop rapid methodologies for the authentication of pasta. A rapid, inexpensive, and easy-to-use method based on infrared spectroscopy was developed and validated for authenticating pasta made with 100% Italian durum wheat. The study was conducted on pasta marketed in Italy and made with durum wheat cultivated in Italy (n = 176 samples) and on pasta made with mixtures of wheat cultivated in Italy and/or abroad (n = 185 samples). Pasta samples were analyzed by Fourier transform-near infrared (FT-NIR) spectroscopy coupled with supervised classification models. The good performance results of the validation set (sensitivity of 95%, specificity and accuracy of 94%) obtained using principal component-linear discriminant analysis (PC-LDA) clearly demonstrated the high prediction capability of this method and its suitability for authenticating 100% Italian durum wheat pasta. This output is of great interest for both producers of Italian pasta pointing toward authentication purposes of their products and consumer associations aimed to preserve and promote the typicity of Italian products.

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