scholarly journals Identification of pathogenic fungi in garlic bulbs during storage and in the root zone during plant growth

2021 ◽  
pp. 105-109
Author(s):  
M. A. Filyushin ◽  
O. A. Danilova ◽  
T. M. Seredin
Keyword(s):  
Fungal Pathogens ◽  
Root Zone ◽  
Pathogenic Fungus ◽  
Fusarium Species ◽  
Pathogenic Fungi ◽  
Phytopathogenic Fungi ◽  
Dry Rot ◽  
Post Harvest ◽  
Genus Fusarium ◽  
Fungal Phytopathogens

Relevance and methods. Losses of agricultural crops are associated not only with the development of diseases during the growing season, but also during post-harvest storage. Garlic is a popular vegetable and aromatic crop in world. Significant losses in garlic yield during cultivation and storage are associated with fungal pathogens, the most harmful of which are representatives of the genus Fusarium. In the Moscow region, the defeat of garlic by Fusarium occurs annually, but with varying intensity. At the Federal Scientific Vegetable Center (FSVC), it was shown that rot and wilting of garlic plants is caused by a complex of pathogenic fungi, including mainly different species of Fusarium. At the same time, the ratio of Fusarium species in the pathogenic complex changes from year to year, new Fusarium species and their races are registered. The aim of this study was to identify fungal phytopathogens causing dry rot of garlic cloves during post-harvest storage. To carry out the work, garlic bulbs of cultivars Dubkovsky and Strelets were taken from the FSVC storage.Results. As a result of visual examination, cloves with symptoms of dry rot were identified. The diseased cloves tissues were plated on potato dextrose agar to obtain fungal colonies. Analysis of the morphological and cultural characteristics of fungal isolates, as well as the nucleotide sequences of four DNA regions (ITS spacers, genes EF1α, RPB1, and RPB2) showed that the causative agent of dry rot of garlic cloves is the pathogenic fungus Fusarium proliferatum. In addition, in the field, identification was carried out based on the analysis of the sequences of spacers ITS and the EF1αgene of phytopathogenic fungi inhabiting the root zone of garlic plants. As a result, two species of fungi of the genus Fusarium (F. proliferatum and F. oxysporum f. sp. cepae), as well as the species Rhizoctonia solani, Volutella rosea, and Ceratobasidium sp. were found in the root zone of garlic cultivars.

scholarly journals Morphological and Molecular Diversity of Ginger (Zingiber officinale Roscoe) Pathogenic Fungi in Chilga District, North Gondar, Ethiopia

2022 ◽  
Vol 2 ◽  
Author(s):  
Sefinew Tilahun ◽  
Marye Alemu ◽  
Mesfin Tsegaw ◽  
Nega Berhane
Keyword(s):  
Causative Agent ◽  
Fungal Pathogens ◽  
Pathogenic Fungus ◽  
Management Strategies ◽  
Infected Plant ◽  
Pathogenic Fungi ◽  
Zingiber Officinale ◽  
Morphological Characterization ◽  
Molecular Techniques ◽  
Diseased Plant

Ginger diseases caused by fungal pathogens have become one of the most serious problems causing reduced production around the world. It has also caused a major problem among farmers in different parts of Ethiopia resulting in a huge decline in rhizome yield. However, the exact causative agents of this disease have not been identified in the state. Although there are few studies related to pathogenic fungus identification, molecular level identification of fungal pathogen was not done in the area. Therefore, this study was undertaken to isolate and characterized the fungal causative agent of ginger disease from the diseased plant and the soil samples collected around the diseased plant from Chilga district, Gondar, Ethiopia. Samples from infected ginger plants and the soil around the infected plant were collected. Culturing and purification of isolates were made using Potato Dextrose Agar supplemented with antibacterial agent chloramphenicol. The morphological characterization was done by structural identification of the isolates under the microscope using lactophenol cotton blue stains. Isolated fungi were cultured and molecular identification was done using an internal transcribed spacer (ITS) of ribosomal DNA (rDNA). A total of 15 fungal morphotypes including 11 Aspergillus spp. (73.3%), 2 Penicillium spp. (13.3%), and single uncultured fungus clone S23 were isolated from the samples representing all the plant organs and the soil. Aspergillus spp. (73.3%) was the most common and seems to be the major causative agent. To the best of our knowledge, this is the first report of ginger pathogenic fungi in Ethiopia identified using ITS rDNA molecular techniques. This study will lay foundation for the development of management strategies for fungal diseases infecting ginger.

scholarly journals IDENTIFIKASI DAN UJI PATOGENISITAS CENDAWAN ENTOMOPATOGEN LOKAL TERHADAP Leptocorisa oratorius

EUGENIA ◽  
2011 ◽  
Vol 17 (3) ◽  
Author(s):  
Emmy Senewe ◽  
Guntur Manengkey
Keyword(s):  
Fungal Pathogen ◽  
Fungal Pathogens ◽  
Pathogenic Fungus ◽  
Pathogenic Fungi ◽  
North Sulawesi ◽  
Pathogenicity Tests ◽  
Major Pest ◽  
White Mycelium ◽  
Fusarium Sp ◽  
Leptocorisa Oratorius

ABSTRACT Leptocorisa oratorius is one major pest of rice in North Sulawesi. Hence, it is necessary to control the pest. The research objective was to identify and to test pathogenicity of local  entomopathogen fungi which infected  Leptocorisa oratorius. The pathogens were collected through sampling of L. oratorius which had been infected by the fungi in the field. The pathogenic fungi was isolated using PDA medium, identified followed by inoculation for pathogenecity test.  During several sampling pest, it was found that  L. oratorius was attacked by fungal pathogens in the field. The identification revelead that the fungal pathogens were Beauveria sp and Fusarium sp. Both the fungal pathogen produced white mycelium and could only be distinguished using microscope in the laboratory. Result of pathogenicity tests showed that the two fungal pathogens caused different mortality of the L. oratorius. Mortality of  L. oratorius caused by pathogenic fungus Beauveria sp was  30.3% . Whereas, mortality of  L. oratorius caused by Fusarium sp was only 3.33%. Keywords : pathogenic fungi, entomopathogen, pathogenicity tests, L. oratorius

Mycotoxin Production in Fusarium According to Contemporary Species Concepts

2021 ◽  
Vol 59 (1) ◽  
Author(s):  
Gary P. Munkvold ◽  
Robert H. Proctor ◽  
Antonio Moretti
Keyword(s):  
Fusarium Species ◽  
Pathogenic Fungi ◽  
Species Concepts ◽  
Classification Systems ◽  
Individual Species ◽  
Annual Review ◽  
Publication Date ◽  
Mycotoxin Production ◽  
Depth Of Knowledge ◽  
Genus Fusarium

Fusarium is one of the most important genera of plant-pathogenic fungi in the world and arguably the world's most important mycotoxin-producing genus. Fusarium species produce a staggering array of toxic metabolites that contribute to plant disease and mycotoxicoses in humans and other animals. A thorough understanding of the mycotoxin potential of individual species is crucial for assessing the toxicological risks associated with Fusarium diseases. There are thousands of reports of mycotoxin production by various species, and there have been numerous attempts to summarize them. These efforts have been complicated by competing classification systems based on morphology, sexual compatibility, and phylogenetic relationships. The current depth of knowledge of Fusarium genomes and mycotoxin biosynthetic pathways provides insights into how mycotoxin production is distributed among species and multispecies lineages (species complexes) in the genus as well as opportunities to clarify and predict mycotoxin risks connected with known and newly described species. Here, we summarize mycotoxin production in the genus Fusarium and how mycotoxin risk aligns with current phylogenetic species concepts. Expected final online publication date for the Annual Review of Phytopathology, Volume 59 is August 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

scholarly journals Preliminary checklist of phytopathogenic fungi in Sikkim, India

2015 ◽  
Author(s):  
Prakash Pradhan
Keyword(s):  
Food Security ◽  
Pathogenic Fungi ◽  
Phytopathogenic Fungi ◽  
Plant Pathogenic Fungi ◽  
Natural Landscape ◽  
Human Economy ◽  
The Future ◽  
Indian State ◽  
Fungal Phytopathogens ◽  
Present Understanding

Sikkim is an Indian state with unique cultural and natural landscape. Being rich in bioresources, earlier biodiversity explorations have led to enumeration of varied flora and fauna. However, fungi being an important biodiversity component, and especially, the fungal phytopathogens having potential of impacting human economy and food security, present understanding is needed to make vision for the future. In this regard, past works (1877-2011) on phytopathogenic fungi reported from Sikkim were surveyed. In this manuscript, 98 species of plant pathogenic fungi (including anamorphs) under 76 genera are enlisted. The alphabetical checklist of the species is provided herewith. Further updates will be added in the subsequent versions of the publication.

Isolation and Identification of Fungal Pathogen Associated with Post Harvest Deterioration of Cucumber (Cucumis sativus L.) Fruits in Three Selected Markets in Jos, Nigeria

2019 ◽  
pp. 1-8
Author(s):  
M. Ishaya ◽  
A. E. Anzaku ◽  
W. C. John ◽  
N. Janfa ◽  
O. Oke ◽  
...  
Keyword(s):  
Fungal Pathogens ◽  
Sampling Technique ◽  
Pathogenic Fungi ◽  
Geotrichum Candidum ◽  
Isolation And Identification ◽  
Cucumis Sativus L ◽  
Post Harvest ◽  
Fungal Isolates ◽  
Cucumber Fruit ◽  
Fruit Samples

Aim: This study was carried out to isolate, identify and characterize fungal pathogens associated with post-harvest spoilage of cucumber. Study Design: This research study was done using random sampling technique.  Place and Duration of Study: The experiment was carried out from March to June, 2019 at biology laboratory Federal College of Forestry, Jos. Methodology: Fungi isolates were obtained from diseased portions of the cucumber fruit samples cultured on PDA media and incubated at 28ºC2 for seven days. The mycelial were identified macroscopically and microscopically. Pathogenicity tests were conducted for all the fungal pathogens identified by inoculating healthy cucumber samples and incubating for ten days with the readings being taken at two day intervals. The data obtained were analyzed using ANOVA and means were separated using LSD at P ≤ 0.05. Results: Aspergillus fumigatus, Fusarium sp., Geotrichum candidum and Yeast sp were isolated and identified. Result showed that Gada biu market was the most heavily infested location with all the fungal isolates. Geotrichum candidum constituted the highest (50%) occurrence of fungal isolates from all locations. All the fungal isolates were found to be pathogenic on cucumber fruits, with Fusarium being the most destructive, followed by yeast and Geotrichum candidum and the least was Aspergilus fumigatus. Conclusion: The results obtained in this study showed the isolates identified were involved in Cucumber spoilage. Therefore, Careful handling of Cucumber fruits should be ensured to prevent the spread of these pathogenic fungi.

scholarly journals A Study of Pathogenic Fungi Causing Post Harvest Losses of Pineapple Sold at Wudil and Yan Lemo Markets of Kano State

2019 ◽  
pp. 1-6
Author(s):  
S. M. Yahaya ◽  
A. B. Kamalu ◽  
M. U. Ali ◽  
M. Lawan ◽  
Y. S. Ajingi ◽  
...  
Keyword(s):  
Aspergillus Niger ◽  
Fungal Pathogen ◽  
Fungal Pathogens ◽  
Pathogenic Fungi ◽  
Potato Dextrose Agar ◽  
Frequency Of Occurrence ◽  
Post Harvest ◽  
Fungal Isolates ◽  
Microbiological Methods ◽  
Two Samples

This research was conducted to determine the fungal pathogens responsible for post harvest losses of pineapple sold at Wudil and Yen lemo markets.  Two samples of pineapples were purchased twice a week from both Wudil and Yanlemo markets for four months. The samples were investigated for the presence of fungal pathogen using standard microbiological methods. The methods involve mounting small portion of pineapple in the plate containing Potato dextrose agar to isolate the fungi. Three fungal pathogens belonging to Aspergillus species were isolated, and Aspergillus niger had the highest frequency of occurrence of (50%). Followed by A. flavus with (27%). The A. fumigatus had the lowest frequency of occurrence of (23%). The differences between the fungal isolates recorded were significantly different (P<0.05) between the two markets, where higher fungal isolates were recorded at Yanlemo market 159 (40.6%) and Wudil 38 (9.71%). The study showed that the post harvest losses of pine apple in the two markets are attributed to fungal infection. Therefore, safe guarding the two markets from debris and dumps of rotten fruits and vegetable may assist in reducing fungal inoculums in the two markets.

scholarly journals Nucleosome patterns in four plant pathogenic fungi with contrasted genome structures

2021 ◽  
Author(s):  
Colin Clairet ◽  
Nicolas LAPALU ◽  
Adeline Simon ◽  
Jessica L. Soyer ◽  
Muriel Viaud ◽  
...  
Keyword(s):  
Gene Expression ◽  
Fungal Pathogens ◽  
Genome Structure ◽  
Axenic Culture ◽  
Fungal Growth ◽  
Pathogenic Fungi ◽  
Phytopathogenic Fungi ◽  
Rna Seq ◽  
Cellular Mechanisms ◽  
Environment Control

Fungal pathogens represent a serious threat towards agriculture, health, and environment. Control of fungal diseases on crops necessitates a global understanding of fungal pathogenicity determinants and their expression during infection. Genomes of phytopathogenic fungi are often compartmentalized: the core genome contains housekeeping genes whereas the fast-evolving genome mainly contains transposable elements and species-specific genes. In this study, we analysed nucleosome landscapes of four phytopathogenic fungi with contrasted lifestyles and genome organisations to describe and compare nucleosome repartition patterns in relation with genome structure and gene expression level. We combined MNase-seq and RNA-seq analyses to concomitantly map nucleosome-rich and transcriptionally active regions during fungal growth in axenic culture; we developed the tool MSTS to analyse and visualise data obtained from MNase-seq experiments in combination with other genomic data and notably RNA-seq expression data. We observed different characteristics of nucleosome profiles between species, as well as between genomic regions within the same species. We further linked nucleosome repartition and gene expression. Our findings support that nucleosome positioning and occupancies are subjected to evolution, in relation with underlying genome sequence modifications. Understanding genomic organisation and its role in expression regulation is the next gear to understand complex cellular mechanisms and their evolution.

scholarly journals Activity of Vitis vinifera Tendrils Extract Against Phytopathogenic Fungi

2015 ◽  
Vol 10 (6) ◽  
pp. 1934578X1501000 ◽  
Author(s):  
Daniele Fraternale ◽  
Donata Ricci ◽  
Giancarlo Verardo ◽  
Andrea Gorassini ◽  
Vilberto Stocchi ◽  
...  
Keyword(s):  
Antifungal Activity ◽  
Vitis Vinifera ◽  
Fusarium Species ◽  
Ethanolic Extract ◽  
Pathogenic Fungi ◽  
Phytopathogenic Fungi ◽  
Dilution Method ◽  
Vitis Vinifera L ◽  
Agar Dilution Method

The in vitro antifungal activity was determined of an ethanolic extract of Vitis vinifera L. tendrils (TVV) against ten plant pathogenic fungi, using the agar dilution method; activity was shown against all tested fungi. Fusarium species were the most sensitive with MIC values ranging from 250 to 300 ppm, while the basidiomycete fungus Rhizoctonia solani was the most resistant, with a MIC value of 500 ppm. Electrospray ionization tandem mass spectrometry (ESI-MSn) was used to obtain qualitative information on the main components of TVV. The high amount of polyphenolic compounds contained in TVV is likely to contribute significantly to its antifungal activity.

scholarly journals Test Antifungal Phatogen Extract Secondary Metabolites Of Endophytic Fungi Raru Plant (Cotylelobium melanoxylon)

2016 ◽  
Vol 1 (2) ◽  
pp. 6
Author(s):  
Uswatun Hasanah ◽  
Riwayati Riwayati ◽  
Idramsa Idramsa
Keyword(s):  
Candida Albicans ◽  
Secondary Metabolites ◽  
Endophytic Fungi ◽  
Fungal Pathogens ◽  
Pathogenic Fungus ◽  
Sclerotium Rolfsii ◽  
Pathogenic Fungi ◽  
Inhibition Zone ◽  
Clear Zone ◽  
Paper Disc

This study aims to determine the ability of extracts  secondary metabolites of endophytic fungi raru plant Siarang (Cotylelobium melanoxylon) in inhibiting the growth of pathogenic fungi. Pathogenic fungi tested were Collectotrichum, Fusarium oxysporum, Candida albicans and Sclerotium rolfsii. Test antifungal pathogens carried out by using the method of Kirby-Bour, ie by measuring the clear zone located around the paper disc which is the zone of growth inhibition of pathogenic fungi. Measurement of inhibition zone is done by using a caliper or ruler. The results showed that the secondary metabolites of endophytic fungi extracts could inhibit the growth of pathogenic fungus Candida albicans is the clear zone of 10.23 mm. Keywords : endophytic fungus, Cotylelobium melanoxylon, extract of secondary metabolites, fungal pathogens, inhibition zone

scholarly journals A high-throughput virtual screening in Grid for new tubulin-targeted inhibitors of plant fungal pathogens

2018 ◽  
Vol 22 ◽  
pp. 335-339
Author(s):  
P. A. Karpov ◽  
O. M. Demchuk ◽  
O. V. Rayevsky ◽  
S. P. Ozheredov ◽  
S. I. Spivak ◽  
...  
Keyword(s):  
Virtual Screening ◽  
Binding Site ◽  
High Throughput ◽  
Fungal Pathogens ◽  
Pathogenic Fungi ◽  
Phytopathogenic Fungi ◽  
Dynamics Simulation ◽  
Targeted Inhibitors ◽  
Β Tubulin ◽  
High Throughput Virtual Screening

Aim. To select new tubulin-targeted inhibitors of plant fungal pathogens based on results of high-throughput virtual screening in Grid. Methods. Protein and ligand spatial structure modelling (I-Tasser, Grid), design and virtual screening ligands library (UCSF Dock 6, Grid), molecular docking (CCDC Gold), molecular dynamics simulation (Gromacs, Grid). Results. 240 structural models of tubulin molecules (82 α-, 111 β- and 47 γ-tubulin) from 62 species of phytopathogenic fungi were constructed. It was found that imidazole ligands, demonstrate strongest affinity to α- and β-tubulin. It was found that among α-, β- and γ-tubulin, taxol binding site of β-tubulin possess the strongest potential as the fungicidal drugs target. It was selected 50 leader compounds: 23 with affinity for GTP/GDF-exchange site and 27 with affinity for taxol-binding site. Conclusions. It was found, that in phytopathogenic fungi, taxol binding site of β-tubulin are the main fungicid drug target (in compare to other tubulin site or isotype). The highest affinity was predicted for the compounds F0478-0219, F0478-0166 and β-tubulin from Puccinia graminis f. sp. Tritici, as well as for the compound F0478-0385 and β-tubulin from Magnaporthe oryzae. Keywords: pathogenic fungi, fungicides, tubulin, virtual screening, Grid.

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