Training-Associated Alterations In Equine Respiratory Immunity – A Multi-Omics Comparative Approach.
Abstract Background: Neutrophilic airway inflammation is highly prevalent in racehorses in training, with the term mild to moderate equine asthma (MMEA) being applied to the majority of such cases. Our proposed study is largely derived from the strong association between MMEA in racehorses and their entry into a race training program; this has led to our primary aim of measuring the effect of race training on pulmonary immune cell function. The objectives of this study are to characterise the effect of training on the local pulmonary immune system and quantify the magnitude of effect by defining (a) the gene expression of tracheal wash (TW) derived cells and (b) the protein expression of TW samples derived from Thoroughbred racehorses prior to (T0) and following commencement of race training (T1). Results: Tracheal wash samples were obtained at both time points (T0, T1) from the same Thoroughbred horses (n=16). Gene expression of TW derived cells, determined by RNAseq and analysed by DEseq2 detected 2,138 differentially expressed (DE) genes during the training period; 1,122 of these were upregulated. The proteome of TW samples was also evaluated and contained 260 DE proteins during the training period; 103 of these were upregulated and the rest downregulated. Gene and protein sets were enriched for biological processes related to acute phase response and oxidative stress, as well as to immune response and inflammation. Many genes, including ISG15, ISG20, IFI35, SOCS1 and TRIM21, were highly enriched for IFN signaling. Interestingly, pathway analysis also highlighted genes and proteins related to haemopoietic processes.Conclusions: This study demonstrated TW samples to represent a rich source of airway cells, protein and RNA to study airway immunity in the horse and highlighted the benefits of a multi-omics methodological approach to studying the dynamics of equine airway immunity. Intense training induced quantifiable alterations in both gene and protein expression of airway derived cells is consistent with deregulation of airway immunity and haemopoietic abnormalities. Respectively, these findings likely reflect the known associations between race training and both airway inflammation and bleeding, in particular offering further insight into the potential mechanisms which underpin training associated airway inflammation.