Methods to extract the exopolymeric matrix from biofilms: a comparative study

To study the composition of a biofilm a previous extraction method is required to separate cells from the matrix. There are several methods reported in the literature; however they are not efficient or promote leakage of intracellular material. In this work several extraction methods were assayed in mixed culture and pure culture biofilms and their efficiency was evaluated by the amount of organic carbon, proteins and intracellular material extracted. The results showed that the extraction with glutaraldehyde 3% (w/v) was the most suitable method, extracting great amounts of organic carbon without promoting cell lysis or permeabilization. Glutaraldehyde is a bifunctional reagent that binds to cell walls avoiding their permeabilization and the biofilm matrix is solubilized in the solution.

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Extraction and Formulation of Perfume from Cymbopogon citratus (Lemongrass)

Journal of Applied Sciences and Environmental Management ◽

10.4314/jasem.v25i8.27 ◽

2021 ◽

Vol 25 (8) ◽

pp. 1461-1463

Author(s):

O.E. Ameh ◽

J.I. Achika ◽

N.M. Bello ◽

A.J. Owolaja

Keyword(s):

Solvent Extraction ◽

Essential Oil ◽

Essential Oils ◽

Boiling Point ◽

Extraction Method ◽

Extraction Methods ◽

Suitable Method ◽

Oil Yield ◽

Cymbopogon Citratus ◽

Solvent Extraction Method

This work aimed to extract perfume from the leaves of Cymbopogon citratus using three extraction methods viz: distillation, solvent extraction and expression or effleurage. About 150 g of dried lemons grass were extracted using ethanol as the solvent to obtain essential oils required for the formulation of perfumes. The result of the hydrodistillation process showed that 1.23 g of essential oil per 130g of dry lemongrass produce 0.95% oil at 78 °C, while the effleurage method was 2.55 g of essential oil per 130 g of dry lemongrass sample thereby producing 1.96% oil yield. The solvent extraction method gave 2.7 g of essential oil per 130 g of dry lemongrass sample. This gives about 2.08 % yield of essential oil at a temperature of 78°C i.e. the boiling point of ethanol. The solvent extraction method yielded 2.08%, the effleuragemethod yielded 1.96% and the hydrodistillation method yielded 0.95% essential oil respectively. In conclusion, solvent extraction gave the highest yield because of less exposure to air and heat, which is highly recommended as the most suitable method for the extraction of essential oil.

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A new method for extraction of exopolymers from activated sludges

Water Science & Technology ◽

10.2166/wst.1998.0669 ◽

1998 ◽

Vol 37 (4-5) ◽

pp. 367-370 ◽

Cited By ~ 7

Author(s):

Joana Azeredo ◽

Rosário Oliveira ◽

Valentina Lazarova

Keyword(s):

Organic Matter ◽

Organic Carbon ◽

Total Organic Carbon ◽

Total Protein ◽

Extraction Method ◽

Combined Treatment ◽

Extraction Methods ◽

New Method ◽

Preliminary Extraction ◽

Activated Sludge Systems

The exopolymeric matrix that surrounds the biomass greatly contributes to the efficiency of activated sludge systems. To study the composition of this matrix a preliminary extraction method is required. In this work three extraction methods (vapor, sonication and combined treatment by sonication and Dowex resin) were used and compared with a new method which uses glutaraldehyde. The extraction effectiveness was estimated by measuring the total protein, the total organic carbon in the extracted solutions and by determining the monosaccharide constituents of the extracted polysaccharides. The proposed new method proved to be the most suitable because it extracted a great quantity of organic matter without disrupting the cells.

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Development of an Extraction Method of Aflatoxins and Ochratoxin A from Oral, Gastric and Intestinal Phases of Digested Bread by In Vitro Model

Toxins ◽

10.3390/toxins14010038 ◽

2022 ◽

Vol 14 (1) ◽

pp. 38

Author(s):

Paula Llorens ◽

Renata Pietrzak-Fiećko ◽

Juan Carlos Moltó ◽

Jordi Mañes ◽

Cristina Juan

Keyword(s):

Extraction Method ◽

Fungal Growth ◽

High Sensitivity ◽

In Vitro Digestion ◽

Extraction Methods ◽

Wheat Bread ◽

The Matrix ◽

Vitro Model ◽

The Stability

Validated extraction methods from in vitro digestion phases are necessary to obtain a suitable bioaccessibility study of mycotoxins in bakery products. The bakery industry produces bread with different ingredients to enrich the nutritional properties of this product and protect it from fungal growth. This bread can be contaminated by AFB1, AFB2, AFG1, AFG2 and OTA, so an extraction method was developed to analyse these five legislated mycotoxins in digested phases of two types of bread, one with wheat and the other with wheat and also enriched with Cucurbita Maxima Pepo at 20%. The studied “in vitro” digestion model consists of oral, gastric and duodenal phases, each one with different salt solutions and enzymes, that can affect the extraction and most probably the stability of the mycotoxins. The proposed method is a liquid–liquid extraction using ethyl acetate by extract concentration. These analytes and components have an important effect on the matrix effect (MEs) in the analytical equipment, therefore, validating the method and obtaining high sensitivity will be suitable. In the proposed method, the highest MEs were observed in the oral phase of digested pumpkin bread (29 to 15.9 %). Regarding the accuracy, the recoveries were above 83% in the digested duodenal wheat bread and above 76 % in the digested duodenal pumpkin wheat bread. The developed method is a rapid, easy and optimal option to apply to oral, gastric and duodenal phases of digested bread contaminated at a level of established maximum levels by European legislation (RC. 1881/2006) for food.

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A Comparative Study of Contemporary Color Tongue Image Extraction Methods Based on HSI

International Journal of Biomedical Imaging ◽

10.1155/2014/534507 ◽

2014 ◽

Vol 2014 ◽

pp. 1-10 ◽

Cited By ~ 3

Author(s):

Mingfeng Zhu ◽

Jianqiang Du ◽

Chenghua Ding

Keyword(s):

Comparative Study ◽

Extraction Method ◽

Active Contour ◽

Extraction Methods ◽

Experimental Results ◽

The Other ◽

Geodesic Active Contour ◽

Thick Coating ◽

Clinical Diagnostic ◽

Novel Method

Tongue image with coating is of important clinical diagnostic meaning, but traditional tongue image extraction method is not competent for extraction of tongue image with thick coating. In this paper, a novel method is suggested, which applies multiobjective greedy rules and makes fusion of color and space information in order to extract tongue image accurately. A comparative study of several contemporary tongue image extraction methods is also made from the aspects of accuracy and efficiency. As the experimental results show, geodesic active contour is quite slow and not accurate, the other 3 methods achieve fairly good segmentation results except in the case of the tongue with thick coating, our method achieves ideal segmentation results whatever types of tongue images are, and efficiency of our method is acceptable for the application of quantitative check of tongue image.

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Impact of Transfaunation of Rumen Ciliate Cultures on Physical Examination, Selected Serum Parameters and Milk Profile in Defaunated Lactating Dairy Goats

International Journal of Veterinary Science ◽

10.37422/ijvs/20.012 ◽

2020 ◽

Keyword(s):

Physical Examination ◽

Mixed Culture ◽

Pure Culture ◽

Milk Fat ◽

Mixed Cultures ◽

Dairy Goats ◽

Serum Parameters ◽

Native Breed ◽

Culture Duration ◽

Inorganic Phosphorous

Rumen ciliates still have mysterious secrets and influences in ruminants. This study investigated the effect of transfaunation of pure and mixed cultures of rumen ciliates on physical clinical examination, selected serum parameters and milk profile in defaunated lactating dairy goats. A number of 8 Baladi native breed goats were randomly classified into two groups each one containing 4 goats. Pure culture group was transfaunated with 6 ml of pure culture of Holotricha spp., while mixed culture group was transfaunated with 6 ml of mixed culture of 81.85% Holotricha and 18.15% Ophryoscolex spp. once weekly for three consecutive weeks, after defaunation of both groups using 30 ml of 8% SLS for two consecutive days. Serum and milk samples were collected weekly for three successive weeks to study effect of type of ciliate culture, duration of transfaunation and their interaction. Results revealed that transfaunation of pure and mixed cultures of rumen ciliates had no effect on physical examination with minimal non-significant improvement of calcium, inorganic phosphorous, total protein and globulin in serum of defaunated goats. Transfaunation of pure or mixed cultures of rumen ciliates within three weeks could not improve significantly decreased milk fat % of defaunated goats without any effect on other measured milk profile parameters. It is concluded that further investigations on transfaunation without prior defaunation should be performed using different pure and mixed cultures of rumen ciliates for therapeutic and productive purposes.

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Evaluation of DNA Extraction Methods Developed for Forensic and Ancient DNA Applications Using Bone Samples of Different Age

Genes ◽

10.3390/genes12020146 ◽

2021 ◽

Vol 12 (2) ◽

pp. 146

Author(s):

Catarina Xavier ◽

Mayra Eduardoff ◽

Barbara Bertoglio ◽

Christina Amory ◽

Cordula Berger ◽

...

Keyword(s):

Dna Extraction ◽

Ancient Dna ◽

Extraction Method ◽

Fragment Size ◽

Molecular Genetic ◽

Extraction Methods ◽

Degraded Dna ◽

Size Analysis ◽

Dna Fragments ◽

Dna Amount

The efficient extraction of DNA from challenging samples, such as bones, is critical for the success of downstream genotyping analysis in molecular genetic disciplines. Even though the ancient DNA community has developed several protocols targeting small DNA fragments that are typically present in decomposed or old specimens, only recently forensic geneticists have started to adopt those protocols. Here, we compare an ancient DNA extraction protocol (Dabney) with a bone extraction method (Loreille) typically used in forensics. Real-time quantitative PCR and forensically representative typing methods including fragment size analysis and sequencing were used to assess protocol performance. We used four bone samples of different age in replicates to study the effects of both extraction methods. Our results confirm Loreille’s overall increased gain of DNA when enough tissue is available and Dabney’s improved efficiency for retrieving shorter DNA fragments that is beneficial when highly degraded DNA is present. The results suggest that the choice of extraction method needs to be based on available sample, degradation state, and targeted genotyping method. We modified the Dabney protocol by pooling parallel lysates prior to purification to study gain and performance in single tube typing assays and found that up to six parallel lysates lead to an almost linear gain of extracted DNA. These data are promising for further forensic investigations as the adapted Dabney protocol combines increased sensitivity for degraded DNA with necessary total DNA amount for forensic applications.

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Impact of Extraction Method on the Detection of Quality Biomarkers in Normal vs. DFD Meat

Foods ◽

10.3390/foods10051097 ◽

2021 ◽

Vol 10 (5) ◽

pp. 1097

Author(s):

Laura González-Blanco ◽

Yolanda Diñeiro ◽

Andrea Díaz-Luis ◽

Ana Coto-Montes ◽

Mamen Oliván ◽

...

Keyword(s):

Extraction Method ◽

Protein Pattern ◽

Stress Protein ◽

Electrophoretic Pattern ◽

Extraction Methods ◽

Sds Page ◽

Weight Protein ◽

Triton X ◽

Protein Extractability ◽

Selection Of

The objective of this work was to demonstrate how the extraction method affects the reliability of biomarker detection and how this detection depends on the biomarker location within the cell compartment. Different extraction methods were used to study the sarcoplasmic and myofibrillar fractions of the Longissimus thoracis et lumborum muscle of young bulls of the Asturiana de los Valles breed in two quality grades, standard (Control) or dark, firm, and dry (DFD) meat. Protein extractability and the expression of some of the main meat quality biomarkers—oxidative status (lipoperoxidation (LPO) and catalase activity (CAT)), proteome (SDS-PAGE electrophoretic pattern), and cell stress protein (Hsp70)—were analyzed. In the sarcoplasmic fraction, buffers containing Triton X-100 showed significantly higher protein extractability, LPO, and higher intensity of high-molecular-weight protein bands, whereas the TES buffer was more sensitive to distinguishing differences in the protein pattern between the Control and DFD meat. In the myofibrillar fraction, samples extracted with the lysis buffer showed significantly higher protein extractability, whereas samples extracted with the non-denaturing buffer showed higher results for LPO, CAT, and Hsp70, and higher-intensity bands in the electrophoretic pattern. These findings highlight the need for the careful selection of the extraction method used to analyze the different biomarkers considering their cellular location to adapt the extractive process.

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Integrated Metabolomics and Transcriptomics Using an Optimised Dual Extraction Process to Study Human Brain Cancer Cells and Tissues

Metabolites ◽

10.3390/metabo11040240 ◽

2021 ◽

Vol 11 (4) ◽

pp. 240

Author(s):

Alison Woodward ◽

Alina Pandele ◽

Salah Abdelrazig ◽

Catherine A. Ortori ◽

Iqbal Khan ◽

...

Keyword(s):

Metabolic Pathways ◽

Extraction Method ◽

Limit Of Detection ◽

Rna Extraction ◽

Extraction Process ◽

Extraction Methods ◽

Serum Starvation ◽

Extraction Techniques ◽

Metabolic Genes ◽

Dual Extraction

The integration of untargeted metabolomics and transcriptomics from the same population of cells or tissue enhances the confidence in the identified metabolic pathways and understanding of the enzyme–metabolite relationship. Here, we optimised a simultaneous extraction method of metabolites/lipids and RNA from ependymoma cells (BXD-1425). Relative to established RNA (mirVana kit) or metabolite (sequential solvent addition and shaking) single extraction methods, four dual-extraction techniques were evaluated and compared (methanol:water:chloroform ratios): cryomill/mirVana (1:1:2); cryomill-wash/Econospin (5:1:2); rotation/phenol-chloroform (9:10:1); Sequential/mirVana (1:1:3). All methods extracted the same metabolites, yet rotation/phenol-chloroform did not extract lipids. Cryomill/mirVana and sequential/mirVana recovered the highest amounts of RNA, at 70 and 68% of that recovered with mirVana kit alone. sequential/mirVana, involving RNA extraction from the interphase of our established sequential solvent addition and shaking metabolomics-lipidomics extraction method, was the most efficient approach overall. Sequential/mirVana was applied to study a) the biological effect caused by acute serum starvation in BXD-1425 cells and b) primary ependymoma tumour tissue. We found (a) 64 differentially abundant metabolites and 28 differentially expressed metabolic genes, discovering four gene-metabolite interactions, and (b) all metabolites and 62% lipids were above the limit of detection, and RNA yield was sufficient for transcriptomics, in just 10 mg of tissue.

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A Structural Analysis Based Feature Extraction Method for OCR System For Myanmar Printed Document Images

International Journal of Computer Vision and Image Processing ◽

10.4018/ijcvip.2012010102 ◽

2012 ◽

Vol 2 (1) ◽

pp. 16-41 ◽

Cited By ~ 1

Author(s):

Htwe Pa Pa Win ◽

Phyo Thu Thu Khine ◽

Khin Nwe Ni Tun

Keyword(s):

Feature Extraction ◽

Structural Analysis ◽

Character Recognition ◽

Optical Character Recognition ◽

Extraction Method ◽

Recognition Performance ◽

Extraction Methods ◽

Support Vector ◽

Svm Classifier ◽

Feature Extraction Method

This paper proposes a new feature extraction method for off-line recognition of Myanmar printed documents. One of the most important factors to achieve high recognition performance in Optical Character Recognition (OCR) system is the selection of the feature extraction methods. Different types of existing OCR systems used various feature extraction methods because of the diversity of the scripts’ natures. One major contribution of the work in this paper is the design of logically rigorous coding based features. To show the effectiveness of the proposed method, this paper assumed the documents are successfully segmented into characters and extracted features from these isolated Myanmar characters. These features are extracted using structural analysis of the Myanmar scripts. The experimental results have been carried out using the Support Vector Machine (SVM) classifier and compare the pervious proposed feature extraction method.

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Compositional Analysis and Aroma Evaluation of Feijoa Essential Oils from New Zealand Grown Cultivars

Molecules ◽

10.3390/molecules24112053 ◽

2019 ◽

Vol 24 (11) ◽

pp. 2053 ◽

Cited By ~ 2

Author(s):

Yaoyao Peng ◽

Karen Suzanne Bishop ◽

Siew Young Quek

Keyword(s):

New Zealand ◽

Essential Oil ◽

Essential Oils ◽

Extraction Method ◽

Compositional Analysis ◽

Extraction Methods ◽

Essential Oil Composition ◽

Oil Composition ◽

Active Compounds ◽

Initial Comparison

Feijoa is an aromatic fruit and the essential oil from feijoa peel could be a valuable by-product in the juicing industry. An initial comparison of the essential oil extraction methods, steam-distillation and hydro-distillation, was conducted. The volatile compounds in the essential oils from four feijoa cultivars were identified and semi-quantified by GC-MS and the aroma active compounds in each essential oil were characterized using SPME-GC-O-MS. Hydro-distillation, with a material to water ratio of 1:4 and an extraction time of 90 min, was the optimized extraction method for feijoa essential oil. The Wiki Tu cultivar produced the highest essential oil yield among the four selected cultivars. A total of 160 compounds were detected, among which 90 compounds were reported for the first time in feijoa essential oils. Terpenes and esters were dominant compounds in feijoa essential oil composition and were also major contributors to feijoa essential oil aroma. Key aroma active compounds in feijoa essential oils were α-terpineol, ethyl benzoate, (Z)-3-hexenyl hexanoate, linalool, (E)-geraniol, 2-undecanone, 3-octanone, α-cubebene, and germacrene D. This is the first report on the optimization of the extraction method and the establishment of the aroma profile of feijoa essential oils, with a comparison of four New Zealand grown cultivars.

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