scholarly journals Isolation and Identification of Endophytic Bacteria from Ficus variegata Blume as Antibacterial Compounds Producer

2016 ◽  
Vol 2 (3) ◽  
pp. 116-128
Author(s):  
Shinta Leonita ◽  
Maria Bintang ◽  
Fachriyan Hasmi Pasaribu
Keyword(s):  
16S Rrna ◽  
Endophytic Bacteria ◽  
Host Plants ◽  
Morphological Analysis ◽  
Bacterial Culture ◽  
Acid Ethyl Ester ◽  
Nonanoic Acid ◽  
Isolation And Identification ◽  
Antibacterial Compounds ◽  
Potential Activity

Endophytic bacteria can produce antibacterial compounds. Their existence in the medicinal plant of Ficus variegata Blume enables the production of bioactive compounds similar to those contained by the host plants. The purpose of this study was to isolate and identify endophytic bacteria from F. variegata which is potential to produce antibacterial compounds. The methods used include isolation of endophytic bacteria from leaves, stem, aerial root, and fruit of F. variegata plants. Antibacterial activity assay was done against four types of bacteria i.e. Staphylococcus aureus, Bacillus subtillis, Escherichia coli, and Psedomonas aeruginosa. Identification of endophytic bacteria was conducted based on morphological analysis, biochemical test, and molecular analysis of 16S rRNA. Endophytic bacterial culture was extracted by ethyl acetate and analyzed by GC-MS. A total of 29 isolates of endophytic bacteria were obtained from F. variegata. The BH2 isolate was found to have potential activity. Analysis of 16S rRNA showed that BH2 isolate was related to Pseudomonas aeruginosa strain SV1 with 99 % identity. The result of GC-MS analysis showed that the antibacterial compound was Nonanoic acid ethyl ester

scholarly journals Investigating the anti-acne potential of endophytic bacterial extracts isolated from Mangifera casturi in indigenous South Borneo, Indonesia

2020 ◽  
Vol 1 (2) ◽  
pp. 54-63
Author(s):  
Julius Riyanto ◽  
Sogandi
Keyword(s):  
16S Rrna ◽  
Endophytic Bacteria ◽  
Propionibacterium Acnes ◽  
Pcr Amplification ◽  
Rrna Gene ◽  
Disc Diffusion ◽  
Potential Growth ◽  
Antibacterial Compounds ◽  
Potential Activity ◽  
Sequence Similarities

Endophytic bacteria are beneficial microorganisms living in the tis-sues system of various parts of a plant, including fruits, leaves, twigs, and roots. The bacteria are stated as forming colonies without caus-ing any damage to the plant. Thus, this study aimed at isolating endo-phytic bacterial from the leaves, barks, and fruits of Kasturi plant (Mangifera casturi), screening its endophytic bacteria, determining the potential of those endophytic bacteria, identifying 16S rRNA and analyzing potential growth of the bacteria. The isolated endophytic bacteria appeared to show potential activity against pathogenic bac-teria Propionibacterium acnes with disc-diffusion methods. Besides, the observations on bacterial activities showed isolate L2, S2 and F4 isolated from leaves, bark and fruits, respectively, as the most potent producers of antibacterial compounds. Technically, those activities were indicated by the formation of clear zones. Molecular identifica-tion was investigated by applying PCR amplification on 16S rRNA gene. Furthermore, the isolate L2 was identified as Enterobacter clo-acae with 99% sequence similarities; however, isolates S2 and F4 were identified as Escherichia coli. Therefore, these findings sug-gested that the identified strains would contribute to any further searches for new sources of anti-acne substances.

scholarly journals Isolation and Characterization of Endophytic Bacteria from Tembelekan (Lantana camara L.) as Antibacterial Compounds Producer

2015 ◽  
Vol 2 (2) ◽  
pp. 86-98
Author(s):  
Dina Dyah Saputri ◽  
Maria Bintang ◽  
Fachriyan H Pasaribu
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Endophytic Bacteria ◽  
Pathogenic Bacteria ◽  
Lantana Camara ◽  
Rrna Gene ◽  
Antibacterial Compounds ◽  
Isolation And Characterization ◽  
Ms Analysis

Endophytic bacteria are microorganisms that live in the internal tissues of plants and have symbiotic mutualism with their host plants. Endophytic bacteria may produce secondary metabolites that can be developed for medical, agricultural, and industrial purposes. Lantana camara is a medicinal plant that has therapeutic potential to treat a variety of diseases such as fever, tuberculosis, rheumatism, asthma, and skin disease. The purpose of this study was to isolate and characterize endophytic bacteria from Lantana camara which has potential to produce antibacterial compounds. The method of this research include isolation of endophytic bacteria of Lantana camara. Antibacterial activity assay was done against four types of pathogenic bacteria i.e. Bacillus cereus, Escherichia coli, Staphylococcus aureus, and Salmonella enteritidis. Characterization of endophytic bacteria was by 16S rRNA gene analysis and identification of antibacterial compounds by GC-MS analysis. Isolation of endophytic bacteria from Lantana camara resulted in BT22 as a potential isolate. Analysis of 16S rRNA gene showed that the BT22 isolate was similar to Bacillus amyloliquefaciens YB-1402 with 99% identity. The results of GC-MS analysis showed some antibacterial compounds such as: Cyclohexanone, 2-[2-(1,3-dithiolan-2-yl)propyl]-6-methyl-3-(1-methylethyl), Octadecane (CAS) n-Octadecane and Tetracosane (CAS) n-Tetracosane.

scholarly journals Isolasi dan Karakterisasi Bakteri Endofit dari Tanaman Binahong dan Katepeng China

2014 ◽  
Vol 3 (2) ◽  
Author(s):  
Desriani Desriani ◽  
Ukhradia Maharaniq Safira ◽  
Maria Bintang ◽  
Akhmad Rivai ◽  
Puspita Lisdiyanti
Keyword(s):  
Staphylococcus Aureus ◽  
Pseudomonas Aeruginosa ◽  
Bacillus Cereus ◽  
Endophytic Bacteria ◽  
Pathogenic Bacteria ◽  
Clear Zone ◽  
Antibacterial Compounds ◽  
Cassia Alata ◽  
Potential Activity ◽  
Medical Effect

AbstrakBakteri endofit merupakan mikroorganisme menguntungkan yang berinteraksi dengan tanaman inang tanpa menyebabkan gangguan atau kerusakan pada tanaman.Beberapa studi menunjukkan bahwa bakteri endofit tertentu dapat memproduksi senyawa kimia yang memiliki efek bagi kesehatan, terutama bakteri endofit yang diisolasi dari tanaman obat.Binahong (Anredera cordifolia) dan Ketepeng Cina (Cassia alata) merupakan tanaman obat yang telah diketahui memiliki beberapa khasiat.Tujuan dari penelitian ini ialah mengisolasi dan mengkarakterisasi bakteri endofit dari kedua tanaman tersebut melalui uji antibakteriterhadap tiga jenis bakteri patogen manusia (Pseudomonas aeruginosa, Staphylococcus aureus, dan Bacillus cereus). Metode: Jumlah bakteri endofit yang berhasil diisolasi dari dua tanaman tersebut berjumlah 73 isolat (37 isolat dari Binahong dan 36 isolat dari Ketepeng Cina). Hasil: Berdasarkan uji antibakteri terhadap tiga bakteri patogen diperoleh 16 isolat bakteri endofit yang memiliki aktivitas potensial (ditandai dengan terbentuknya zona hambat), yaitu 1 isolat dari Ketepeng Cina (terhadap Pseudomonas aeruginosa) dan 15 isolat dari Binahong. Pembahasan: Terbentuknya zona hambat mengindikasikan kemungkinan adanya senyawa kimia yang memiliki efek antibakteri.Kata kunci: bakteri endofit, Anredera cordifolia, Cassia alata, antibakteri.AbstractEndophytic bacteria is a beneficial microorganism that interacts with plant without causing any harm to the host. Most studies showed that certain endophytic bacteria can produce chemical compound which have medical effect, especially endophytic bacteria isolated from medicinal plant. Binahong (Anrederacordifolia) and KetepengCina (Cassia alata) are several of medicinal plants potential to be used for medical purpose. Methods: The objective of this study was to isolate and to characterize endophytic bacteria from both plants through antibacterial activity test against to three kinds of human pathogenic bacteria (Pseudomonas aeruginosa, Staphylococcus aureus, and Bacillus cereus). Results: total isolated endophytic bacteria from both plants are 73 isolates (37 isolates from Binahong and 36 isolates from KetepengCina). There were 16 isolates have potential activity (indicated by clear zone), one isolate from KetepengCina and 15 isolates from Binahong. Discussion: The formed clear zone indicates antibacterial compounds produced by endophyticbacteriatested. Further research is needed to identify the type of antibacterial compounds produced.Keywords:endophytic bacteria, Anrederacordifolia, Cassia alata, antibacterial.

scholarly journals Isolation and Identification of Endophytic Bacteria from the Roots of the Endangered Plant Ostrya rehderiana

2020 ◽  
Vol 23 (01) ◽  
pp. 82-86
Author(s):  
Taihe Xiang
Keyword(s):  
Sequence Analysis ◽  
Growth And Development ◽  
Endophytic Bacteria ◽  
Morphological Analysis ◽  
Endangered Plant ◽  
Rhizobium Strain ◽  
Isolation And Identification ◽  
16S Rdna Sequence ◽  
16S Rdna Sequence Analysis ◽  
In The Wild

Ostrya rehderiana Chun, one of the most endangered species in China mainly because of difficult transplantation, is distributed in Western Tianmu Mountain of the Zhejiang Province in China. There are presently only five plants still remaining in the wild. Since plant endophytes affect the growth and development of the host plant either directly or indirectly, in this study, we adopted the tissue block separation method to isolate 22 endophytic bacteria strains from the roots of O. rehderiana, with 10 strains from wild O. rehderiana and 12 from O. rehderiana plantations. From morphological analysis and 16S rDNA sequence analysis, 6 known genera were identified from the 22 strains. Among the isolated strains, eight were Bacillus (the dominant endophytic bacteria in the root of O. rehderiana), six were Paenibacillus, three were Agrobacterium, three were Paraburkholderia, one was Rhizobium, and one was Pseudomonas. Both wild and plantation O. rehderiana contained Bacillus, Paenibacillus and Paraburkholderia, which presumably could promote the growth of O. rehderiana. Besides, the Rhizobium strain isolated from wild O. rehderiana might be beneficial to the growth of O. rehderiana, but the Agrobacterium strains from the plantations might impair the growth of O. rehderiana. © 2020 Friends Science Publishers

scholarly journals Isolasi Bakteri Endofit dari Tanaman Sirih Hijau (Piper betle L.) dan Potensinya sebagai Penghasil Senyawa Antibakteri

2017 ◽  
Vol 1 (1) ◽  
pp. 51-57
Author(s):  
Ukhradiya Magharaniq Safira ◽  
Fachriyan Hasmi Pasaribu ◽  
Maria Bintang
Keyword(s):  
Escherichia Coli ◽  
Endophytic Bacteria ◽  
Host Plants ◽  
Salmonella Enteritidis ◽  
Pathogenic Bacteria ◽  
Chemical Compounds ◽  
Inhibition Zone ◽  
Piper Betle ◽  
Antibacterial Effects ◽  
Potential Activity

Endophytic bacteria are beneficial microorganisms that interact with host plants without causing disruption or damage to the host. Some studies suggest that certain endophytic bacteria can produce chemical compounds that have an effect on health, especially endophytic bacteria isolated from medicinal plants. Green betel (Piper betle L.) is a medicinal plant that has been used for years and has many benefits. The purposes of this study are to isolating and screening of endophytic bacteria from green betel against four pathogenic bacteria (Staphylococcus aureus, Escherichia coli, Bacillus cereus and Salmonella enteritidis). The number of endophytic bacteria that has been isolated are 14 isolates. Based on the screening results, three isolates of endophytic bacteria have potential activity (characterized by the formation of inhibition zone) against S. aureus. The inhibition zone may indicate that those isolates produce compounds that have antibacterial effects. Those isolates are AS1, BS1 and BS2. The biggest inhibition zone showed by BS1, so it can be concluded that BS1 is the most potential isolate as a novel source of antibacterial compound.

scholarly journals Biocontrol potential; antifungal activity and plant growth promoting activities of endophytic bacteria from Raphanus sativus

2021 ◽  
Vol 12 (2) ◽  
pp. 1143-1150
Author(s):  
Lavanya J ◽  
Chanthosh S ◽  
Reshma Shrii ◽  
Viknesh V ◽  
Deepika S ◽  
...  
Keyword(s):  
16S Rrna ◽  
Plant Growth ◽  
Raphanus Sativus ◽  
Endophytic Bacteria ◽  
Effective Strain ◽  
Pathogenic Fungi ◽  
Plant Diseases ◽  
Plant Pathogenic Fungi ◽  
Plant Growth Promoting ◽  
Growth Promoting

The study was aimed to find an alternate approach for chemicals used in agriculture to avoid microbial infections. Fungal pathogens cause different types of plant diseases and affect a majority of edible crops by destroying the tissues of the plant in a direct or indirect mechanism. So, an alternative approach led to the development of biocontrol agents using endophytic  bacteria. A total of 8 endophytic bacteria were isolated from the root, stem, and leaves of radish (Raphanus sativus). The antagonistic activity of these bacteria against the 2 isolated plant pathogenic fungi was determined in vitro. Two out of eight bacteria showed more than 50% inhibitory activity against one fungus, were further characterized using the 16s rRNA sequencing method. On the basis of the phylogenetic tree of the 16s rRNA method, the endophytic bacterial samples were identified as Tonsilliphilus suis  and Exiguobacterium aurantiacum against plant pathogenic Aspergillus flavus  isolated from Raphanus sativus, which makes them highly suitable as an alternative for chemical fertilizers to provide resistance to plant pathogenic fungi. The cell wall degrading activities such as protease activity, amylase activity, and plant growth-promoting properties such as Hydrogen cyanide (HCN), Indole acetic acid (IAA), ammonia production of these endophytic bacteria were evaluated. The results show that T. suis  is the most effective strain for radish growth development.

scholarly journals Isolation and Identification of Resistant Bacteria from Petroleum Producing Vicinity by Gene Amplification and Sequencing

2021 ◽  
pp. 1-8
Author(s):  
O. Aleruchi ◽  
O. Obire
Keyword(s):  
16S Rrna ◽  
Phylogenetic Study ◽  
Resistant Bacteria ◽  
Rrna Gene ◽  
Bacterial Isolates ◽  
Antibiotic Resistant Bacteria ◽  
Isolation And Identification ◽  
Antibiotic Resistant ◽  
Disinfection Process ◽  
Adaptive Mechanisms

This investigation focuses on molecular identification of antibiotic resistant bacteria isolated from petroleum producing vicinity using 16S rRNA sequencing based technique. The bacterial 16s rRNA gene sequences were amplified using polymerase chain reaction, sequenced,  characterized and compared by using primers which has been compared to national center for biotechnology information (NCBI) sequence database. The presence of the plasmid mediated antibiotic resistance determinants CTX-M and QNRB genes in the bacterial isolates were analyzed. A total of four bacterial isolates that were resistant to all the antibiotic agents used were identified molecularly. The BLAST results showed 100 % similarity and phylogenetic study indicated that the genes were evolutionarily related to Morganella morganii, Pseudomonas xiamenensis, Chryseobacterium cucumeris and Staphylococcus sp., respectively. The genes obtained were submitted to the NCBI gene bank and were assigned accession number; MN094330, MN094331, MN094332 and MN094333, respectively. CTX-M and QNRB genes were however absent in the bacterial isolates. The result identified some peculiar abilities of the bacterial isolates to be resistant to antibiotics and suggests a correlation with resistance and hydrocarbon utilizing bacteria. The level of resistance could be as a result of the disinfection process during wastewater treatment procedure or the same adaptive mechanisms possessed by the isolates to control the hydrocarbon concentration in their cell. The study also clearly indicates that these wastewaters, when discharged into the environment directly may pose a risk for the spread of antibiotic resistant bacteria.

scholarly journals First Detection of Pathogenic Escherichia coli Isolates Associated With Donkey Foals’ Diarrhea in Northern China

2020 ◽  
Author(s):  
Liu Wen-qiang ◽  
Xia Nan ◽  
Zhang Jing-wen ◽  
Wang Ren-hu ◽  
Jiang Gui-miao
Keyword(s):  
Escherichia Coli ◽  
16S Rrna ◽  
Virulence Factors ◽  
Influence Factor ◽  
Genetic Relationships ◽  
Northern China ◽  
Multi Drug Resistance ◽  
Rrna Gene ◽  
Isolation And Identification ◽  
Antibiotics Sensitivity

ABSTRACTObjectiveThe aim of this study was to identify the biological features, influence factor and Genome-wide properties of pathogenic donkey Escherichia coli (DEC) isolates associated with severe diarrhea in Northern China.MethodsThe isolation and identification of DEC isolates were carried out by the conventional isolation、automatic biochemical analysis system、serotype identification、16S rRNA test、animal challenge and antibiotics sensitivity examination. The main virulence factors were identified by PCR. The complete genomic re-sequence and frame-sequence were analyzed.Results216 strains of DEC were isolated from diarrhea samples, conforming to the bacterial morphology and biochemical characteristics of E.coli. The average size of the pure culture was 329.4 nm×223.5 nm. Agglutination test showed that O78 (117/179, 65.4%) was the dominant serotype and ETEC(130/216, 60.1%) was the dominant pathogenic type. Noticeable pathogenic were observed in 9 of 10 (90%) randomly selected DEC isolates caused the death of test mice (100%, 5/5) within 6h∼48h, 1 of 10 (10%) isolates caused the death of test mice (40%, 2/5) within 72h. Our data confirmed that DEC plays an etiology role in dirarrea/death case of donkey foal. Antibiotics sensitivity test showed significant susceptibility to DEC isolates were concentrated in Nor、EFT、ENR、CIP and AMK,while the isolates with severe antibiotic resistance was AM、TE、APR、FFC、RL and CN. Multi-drug resistance was also observed. A total of 15 virulence gene fragments were determined from DEC(n=30) including OMPA (73%), safD (77%), traTa (73%), STa(67%), EAST1 (67%), astA (63%), kspII (60%), irp2 (73%), iucD (57%), eaeA (57%), VAT (47%), iss (33%), cva (27%), ETT2 (73%) and K88 (60%) respectively. More than 10 virulence genes from 9 of 30(30%) DEC strains were detected, while 6 of 30(20%) DEC strains detected 6 virulence factors. phylogenetic evolutionary tree of 16S rRNA gene from different isolates shows some variability. The original data volume obtained from the genome re-sequencing of DEC La18 was 2.55G and Genome framework sequencing was carried out to demonstrate the predicted functions and evolutionary direction and genetic relationships with other animal E.coli.ConclusionsThese findings provide firstly fundamental data that might be useful in further study of the role of DEC and provide a new understanding of the hazards of traditional colibacillosis due to the appear of new production models.

scholarly journals Antibacterial Compounds from Glycosmis puberula Twigs

2014 ◽  
Vol 9 (12) ◽  
pp. 1934578X1400901
Author(s):  
Cholpisut Tantapakul ◽  
Tawanun Sripisut ◽  
Wisanu Maneerat ◽  
Thunwadee Ritthiwigrom ◽  
Surat Laphookhieo
Keyword(s):  
Antibacterial Activities ◽  
Gram Negative Bacteria ◽  
Isolation And Identification ◽  
Gram Positive ◽  
Antibacterial Compounds ◽  
Gram Negative ◽  
Spectroscopic Analyses ◽  
Phytochemical Investigation ◽  
Reported Data

The first phytochemical investigation of Glycosmis puberula twigs led to the isolation and identification of a new quinolone alkaloid, glycosmispuberulone (1), along with ten known compounds (2–11). The structures were elucidated by spectroscopic analyses and comparison with previously reported data. Their antibacterial activities against Gram-positive and Gram-negative bacteria were also evaluated.

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