Study on floral traits and seed setting in parental lines of hybrid rice during early ahu and kharif seasons

2018 ◽  
Vol 78 (3) ◽  
Author(s):  
Aradhana Phukan ◽  
P. K. Barua ◽  
D. Sarma ◽  
S. D. Deka
Keyword(s):  
Seed Set ◽  
Flag Leaf ◽  
Pollen Dispersal ◽  
Pollen Sterility ◽  
Leaf Length ◽  
Floral Traits ◽  
Opening Angle ◽  
Leaf Angle ◽  
Seed Setting ◽  
Parental Lines

Two CMS lines, IR 58025A and IR 68888A along with their maintainers and two fertility restorers, LuitR and IR 36R, were evaluated for flower and plant characters during early ahu (February-June) and kharif (July-November) seasons. IR 58025A showed longer stigmata and styles, and higher spikelet Length/Breadth (L/B) ratio while IR 68888A showed broader stigmata and wider glume opening angle in both the seasons. IR 68888A also exhibited higher pollen sterility during early ahu. IR 36R was characterized with broad anthers. LuitR showed longer and broader anthers with more pollen than others. Plant height, flag leaf length, flag leaf width and area were higher in IR 36R. Panicle exsertion was complete in pollen parents whereas it was 78-80% in CMS lines. The widest flag leaf angle was found in IR 58025B during early Ahu and in IR 36R during kharif. Kharif season was more favourable for growth of the plants with higher seed set percentage while floral traits of the CMS lines were better expressed in early Ahu. Manipulation of the seeding sequence of the parental lines in early Ahu is warranted for better seed set provided the seed crop escapes heavy premonsoon showers during reproductive stage. IR 68888A/LuitR was a good combination for pollen dispersal and seed setting.

New plant type trait characterization and development of core set among indica and tropical japonica genotypes of rice

2018 ◽  
Vol 16 (6) ◽  
pp. 504-512 ◽  
Author(s):  
B. Jyothi ◽  
B. Divya ◽  
L. V. Subba Rao ◽  
P. Laxmi Bhavani ◽  
P. Revathi ◽  
...  
Keyword(s):  
Flag Leaf ◽  
Hierarchical Cluster ◽  
Genetic Distances ◽  
Leaf Length ◽  
Leaf Angle ◽  
Plant Type ◽  
Breeding Programs ◽  
Core Set ◽  
Type Traits ◽  
Flag Leaf Length

AbstractThis study was conducted to characterize new plant type (NPT) traits among 650 genetically diverse rice genotypes of tropical japonica and indica and to establish an initial core set for NPT traits. Analysis of variance revealed highly significant differences among the genotypes for all the traits assessed except flag length and width and leaf angles. Dendrogram categorized the genotypes into five distinct duration groups. Genotypes viz., Pumphamah, IRGC5097, IRGC37015, IRGC43741, IRGC50448, IRGC53089, IRGC39111, IRGC18021, Haorei Machang, IRGC44069, IRGC8269, Thangmoi, IRGC33130 and IRGC29772 were identified as possessing strong culm. Long panicles with a length of more than 35 cm were found in IRGC8269, IRGC9147, IRGC14694, IRGC19642, IRGC27435, IRGC39111, IRGC31051, IRGC26011and IRGC25892. Ideal leaf angle of NPT genotypes of 5°, 10° and 20° of flag leaf, 1st and 2nd leaves was not found in any genotype but with a combination of 5°, 10° and 10° was observed in IRGC63102 and IRGC66644. NPT flag leaf length and width of 50 and 2 cm, respectively, was seen in ‘Kemenya Kepeu’ and ‘IRGC29772’. High grain number of more than 350 was observed in IRGC53089, IRGC31063 and Azhoghi. A total of 72 genotypes were found with a combination of one or more ideal plant type traits of which, hierarchical cluster analysis based on genetic distances selected 32 as NPT core set. This core set will serve as an ideal genetic resource for breeding programs aimed at NPT development.

scholarly journals Eco-geographic variation of common wild rice - Oryza ru?pogon Griff. in Sri Lanka

2018 ◽  
Vol 1 (02) ◽  
pp. 36-43
Author(s):  
S Sandamal ◽  
A Tennakoon ◽  
D Ratnasekera ◽  
DABN Amarasekera ◽  
B Marambe
Keyword(s):  
Sri Lanka ◽  
Phenotypic Diversity ◽  
Flag Leaf ◽  
Morphological Diversity ◽  
Population Based ◽  
Leaf Length ◽  
Oryza Rufipogon ◽  
Conservation Strategies ◽  
Leaf Angle ◽  
Flag Leaf Length

Wild species of rice (Oryza) have superior agronomic characteristics to be incorporated in rice breeding programs worldwide.  Population studies of wild relatives of rice in Sri Lanka has not being well documented despite a few of attempts. In the present study, phenotypic diversity of Oryza rufipogon populations exist in Sri Lanka were characterized based on nine quantitative morphological traits. Populations (P1, P2, P3, P4 and P5) were established in a common-garden and were characterized. The results revealed moderate phenotypic diversity among O. rufipogon populations studied. However, flag leaf length and awn length were the most variable traits while plant height, flag leaf angle, flag leaf panicle neck length and spikelet angle were the least variable traits. O. rufipogon can be simply distinguished using flag leaf length and width, panicle branching type and distance from panicle base to lowest spikelet insertion. The dendrogram results indicated that four main clusters are at a similarity level of 98.73, showing the diversely related populations with a high identity based on higher similarity values. P1 and P2 populations grouped together by forming the first cluster. The second, third and fourth clusters consisted of P3, P5 and P4 populations, respectively. One population from first cluster and P3, P5 and P4 populations can be used for conservation. This study highlights the phenotypic diversity of O. rufipogon populations existing in Sri Lanka across the geographic locations and Knowledge on such morphological diversity provides opportunities to design conservation strategies and the potentials of using particular population based on breeding objectives.  

scholarly journals Effect of flag leaf length of erect panicle rice on the canopy structure and biomass production after heading

2021 ◽  
pp. 1-10
Author(s):  
Yuki Makino ◽  
Yoshihiro Hirooka ◽  
Koki Homma ◽  
Rintaro Kondo ◽  
Tian-Sheng Liu ◽  
...  
Keyword(s):  
Biomass Production ◽  
Flag Leaf ◽  
Canopy Structure ◽  
Leaf Length ◽  
Flag Leaf Length

Spikelet fertility and heat shock transcription factor (Hsf) gene responses to heat stress in tolerant and susceptible rice (Oryza sativa L.) genotypes

2019 ◽  
Vol 157 (04) ◽  
pp. 283-299 ◽  
Author(s):  
C. Malumpong ◽  
S. Cheabu ◽  
C. Mongkolsiriwatana ◽  
W. Detpittayanan ◽  
A. Vanavichit
Keyword(s):  
Heat Stress ◽  
Pollen Germination ◽  
Seed Set ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Pollen Viability ◽  
Spikelet Fertility ◽  
Anther Dehiscence ◽  
Spikelet Sterility ◽  
Plant Parts

AbstractThe reproductive stage of rice is the most sensitive to heat stress, which can lead to spikelet sterility. Thus, heat-tolerant and heat-susceptible genotypes were used to investigate their differences in terms of phenotypic responses and expression changes of Hsf genes at the pre-flowering stage under heat stress. Results clearly showed that panicles had the highest temperature compared with other plant parts under both natural and heated conditions. However, the temperatures of tolerant and susceptible genotypes were not significantly different. In terms of spikelet fertility, the tolerant lines M9962 and M7988 had high seed set because their anther dehiscence, pollen viability and pollen germination were only slightly affected. In contrast, the susceptible line Sinlek showed severe effects at all steps of fertilization, and the pollen viability of M7766 was slightly affected under heat stress but was more affected in terms of anther dehiscence and pollen germination. Both susceptible lines showed dramatically decreased seed set. In addition, the expression of six HsfA genes in the flag leaves and spikelets at the R2 stage of plants under heat stress showed different responses. Notably, expression of the HsfA2a gene was predominantly upregulated in the flag leaf and spikelets under heat stress in M9962. Therefore, it can be concluded that heat stress has severe effects on the stamen, and that different genotypes have different susceptibilities to heat stress.

scholarly journals Uncovering genomic regions controlling plant architectural traits in hexaploid wheat using different GWAS models

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ali Muhammad ◽  
Jianguo Li ◽  
Weichen Hu ◽  
Jinsheng Yu ◽  
Shahid Ullah Khan ◽  
...  
Keyword(s):  
Plant Height ◽  
Genome Wide Association Study ◽  
Flag Leaf ◽  
Significant Snps ◽  
Complex Trait ◽  
Leaf Length ◽  
Candidate Snps ◽  
A Genome ◽  
Multiple Environments ◽  
Architectural Traits

AbstractWheat is a major food crop worldwide. The plant architecture is a complex trait mostly influenced by plant height, tiller number, and leaf morphology. Plant height plays a crucial role in lodging and thus affects yield and grain quality. In this study, a wheat population was genotyped by using Illumina iSelect 90K single nucleotide polymorphism (SNP) assay and finally 22,905 high-quality SNPs were used to perform a genome-wide association study (GWAS) for plant architectural traits employing four multi-locus GWAS (ML-GWAS) and three single-locus GWAS (SL-GWAS) models. As a result, 174 and 97 significant SNPs controlling plant architectural traits were detected by ML-GWAS and SL-GWAS methods, respectively. Among these SNP makers, 43 SNPs were consistently detected, including seven across multiple environments and 36 across multiple methods. Interestingly, five SNPs (Kukri_c34553_89, RAC875_c8121_1490, wsnp_Ex_rep_c66315_64480362, Ku_c5191_340, and tplb0049a09_1302) consistently detected across multiple environments and methods, played a role in modulating both plant height and flag leaf length. Furthermore, candidate SNPs (BS00068592_51, Kukri_c4750_452 and BS00022127_51) constantly repeated in different years and methods associated with flag leaf width and number of tillers. We also detected several SNPs (Jagger_c6772_80, RAC875_c8121_1490, BS00089954_51, Excalibur_01167_1207, and Ku_c5191_340) having common associations with more than one trait across multiple environments. By further appraising these GWAS methods, the pLARmEB and FarmCPU models outperformed in SNP detection compared to the other ML-GWAS and SL-GWAS methods, respectively. Totally, 152 candidate genes were found to be likely involved in plant growth and development. These finding will be helpful for better understanding of the genetic mechanism of architectural traits in wheat.

scholarly journals Detection of QTLs for Outcrossing-Related Traits in CSSL Population Derived from Primitive Japonica Accession Ludao in the Genetic Background of O. sativa spp. Japonica Restorer C-bao Using RSTEP-LRT Method

Agronomy ◽  
2019 ◽  
Vol 10 (1) ◽  
pp. 28
Author(s):  
Lal Bux ◽  
Dalu Li ◽  
Muhammad Faheem ◽  
Nour Ali ◽  
Muzafar Hussain Sirohi ◽  
...  
Keyword(s):  
Seed Production ◽  
Hybrid Rice ◽  
Oryza Sativa L ◽  
Flag Leaf ◽  
Leaf Angle ◽  
Ratio Test ◽  
Phenotypic Variance ◽  
Rice Seed ◽  
Hybrid Seed Production ◽  
Cms Line

The outcrossing traits in rice (Oryza sativa L.) affect the yield of hybrid seed production. Using a cytoplasmic male sterile (CMS) line with good outcrossing traits, such as short flag leaf length (FLL), narrow flag leaf width (FLW), wide flag leaf angle (FLA), and elongated panicle neck length (PNL), for hybrid rice seed production, it is possible to avoid the procedure of cutting flag leaves and make the supplementary pollination feasible by machine. In this study, a japonica restorer C-bao as the receptor parent and a primitive japonica accession Ludao as the donor parent were used to construct a chromosome segment substitution line (CSSL) population. The CSSL population was used to detect quantitative trait loci (QTLs) for the four outcrossing traits using a likelihood ratio test based on the stepwise regression (RSTEP-LRT) method. The CSSL population constructed consisted of 163 lines covering 90.7% of the donor genome. Among the seven QTLs detected in the CSSL population, four QTLs were detected in both years. qFLL-4 explained 6.70% of the two-year-averaged phenotypic variance, and the alleles from Ludao decreased FLL 5.1 cm. qFLA-1.1 and qFLA-1.2 explained 7.85% and 21.29% of the 2-year-averaged phenotypic variance respectively, and the alleles from Ludao increased FLA 17.38° and 31.50°. qPNL-8 explained 8.87% of the 2-year-averaged phenotypic variance, and the alleles from Ludao increased PNL 4.44 cm. These favorable alleles identified could be used to improve the outcrossing traits of parents for hybrid rice seed production in rice.

scholarly journals Genetic Divergence in Indigenous Wild and Cultivated Rice Species of Manipur Valley

ISRN Genetics ◽  
2013 ◽  
Vol 2013 ◽  
pp. 1-6 ◽  
Author(s):  
K. Medhabati ◽  
K. Rajiv Das ◽  
M. Rohinikumar ◽  
H. Sunitibala ◽  
Th. Dikash Singh
Keyword(s):  
Genetic Divergence ◽  
Wild Rice ◽  
Flag Leaf ◽  
Cluster Formation ◽  
Leaf Length ◽  
Cultivated Rice ◽  
And Performance ◽  
Flag Leaf Length ◽  
The Individual ◽  
Hybridization Programme

Genetic divergence of 32 indigenous rice germplasms and five wild rice of which three from Manipur and two wild rice procured from IRRI, Philippines was investigated using Mahalanobis, D2 statistic. Based on twelve agromorphological characters, the thirty-seven germplasms both wild and cultivated were grouped into five clusters based on the relative magnitudes of D2 values following Tocher's method of cluster formation. Based on the rank totals, the characters which contributed maximum towards genetic divergence in the present studies were grain yield/plant, spikelet/panicle, 100 grain weight, grain length, days to 50% flowering, ear bearing tillers/plant, and flag leaf length. In the present study, maximum intercluster distance was estimated between cluster III and (D2=14.09) which was closed followed by clusters II and V (D2=12.50). On the basis of their greater intercluster distance, high value of cluster mean according to the character to be improved and performance of the individual germplasms for the character, the germplasms could be used in hybridization programme for improvement of different plant characters in the rice germplasms of Manipur.

Nitrogen effect on the growth and yield contributing characters of Binadhan-19

2020 ◽  
Vol 04 (02) ◽  
pp. 157-164
Author(s):  
M. B. Akter ◽  
N. Nahar ◽  
M. S. Rana ◽  
M. N. Hasan ◽  
M. B. Rayhan
Keyword(s):  
Flag Leaf ◽  
Block Design ◽  
Leaf Length ◽  
Grain Weight ◽  
Growth And Yield ◽  
Superior Performance ◽  
Nitrogen Effect ◽  
Matter Production ◽  
Four Levels ◽  
Flag Leaf Length

The experiment was conducted at the BINA sub-station, Rahmatpur, Barishal, during the period from April 2020 to August 2020 to investigate the effect of nitrogen on the yield of transplant Aus rice cv. Binadhan-19. The experiment comprised four levels of nitrogen viz (a) N0 (zero nitrogen), (b) N1 (90 kg N/ha), (c) N2 (110 kg N/ha) and (d) N3 (130 kg N/ha). Nitrogen fertilizer was applied at two splits. The experiment was laid out in a randomized complete block design with three replications. Results revealed that plant height, effective tiller, non-effective tiller, flag leaf length, filled gran, unfilled grain and 1000 grain weight were increased with increasing nitrogen doses till 110 kg N ha-1. Furthermore, the highest grain weight was recorded in 110 kg N ha-1 due to superior performance of yield contributing characters of BInadhan-19. A positive correlation was found between grain yield and total dry matter production. The experimental results concluded that 110 kg N ha-1 would be the best dose for higher gain yield in Binadhan-19 in aus season.

scholarly journals Enhanced Expression of QTL qLL9/DEP1 Facilitates the Improvement of Leaf Morphology and Grain Yield in Rice

2019 ◽  
Vol 20 (4) ◽  
pp. 866 ◽  
Author(s):  
Xue Fu ◽  
Jing Xu ◽  
Mengyu Zhou ◽  
Minmin Chen ◽  
Lan Shen ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Molecular Design ◽  
Flag Leaf ◽  
Leaf Shape ◽  
Leaf Length ◽  
Yield Potential ◽  
High Yield ◽  
Global Food Security ◽  
Germplasm Collections ◽  
Introgressed Segment

In molecular breeding of super rice, it is essential to isolate the best quantitative trait loci (QTLs) and genes of leaf shape and explore yield potential using large germplasm collections and genetic populations. In this study, a recombinant inbred line (RIL) population was used, which was derived from a cross between the following parental lines: hybrid rice Chunyou84, that is, japonica maintainer line Chunjiang16B (CJ16); and indica restorer line Chunhui 84 (C84) with remarkable leaf morphological differences. QTLs mapping of leaf shape traits was analyzed at the heading stage under different environmental conditions in Hainan (HN) and Hangzhou (HZ). A major QTL qLL9 for leaf length was detected and its function was studied using a population derived from a single residual heterozygote (RH), which was identified in the original population. qLL9 was delimitated to a 16.17 kb region flanked by molecular markers C-1640 and C-1642, which contained three open reading frames (ORFs). We found that the candidate gene for qLL9 is allelic to DEP1 using quantitative real-time polymerase chain reaction (qRT-PCR), sequence comparison, and the clustered regularly interspaced short palindromic repeat-associated Cas9 nuclease (CRISPR/Cas9) genome editing techniques. To identify the effect of qLL9 on yield, leaf shape and grain traits were measured in near isogenic lines (NILs) NIL-qLL9CJ16 and NIL-qLL9C84, as well as a chromosome segment substitution line (CSSL) CSSL-qLL9KASA with a Kasalath introgressed segment covering qLL9 in the Wuyunjing (WYJ) 7 backgrounds. Our results showed that the flag leaf lengths of NIL-qLL9C84 and CSSL-qLL9KASA were significantly different from those of NIL-qLL9CJ16 and WYJ 7, respectively. Compared with NIL-qLL9CJ16, the spike length, grain size, and thousand-grain weight of NIL-qLL9C84 were significantly higher, resulting in a significant increase in yield of 15.08%. Exploring and pyramiding beneficial genes resembling qLL9C84 for super rice breeding could increase both the source (e.g., leaf length and leaf area) and the sink (e.g., yield traits). This study provides a foundation for future investigation of the molecular mechanisms underlying the source–sink balance and high-yield potential of rice, benefiting high-yield molecular design breeding for global food security.

SELECTION FOR SEED SET IN NONINBRED AND PARTLY INBRED POPULATIONS OF ALFALFA

1977 ◽  
Vol 57 (3) ◽  
pp. 873-881 ◽  
Author(s):  
R. MICHAUD ◽  
T. H. BUSBICE
Keyword(s):  
Medicago Sativa ◽  
Seed Set ◽  
Exponential Model ◽  
Seed Setting ◽  
Medicago Sativa L ◽  
Selection For ◽  
Inbred Populations ◽  
The Relationship ◽  
Advanced Generation ◽  
Coefficient Of Inbreeding

Alfalfa (Medicago sativa L.) is a highly heterozygous cross-pollinating species, and most breeding efforts have been conducted on noninbred populations. The purpose of this study was to determine whether greater breeding progress could be made by selecting within partly inbred populations rather than within noninbred ones. One hundred and twenty F1 (noninbred) and 120 S1 (partly inbred) plants that were issued from crossing and selfing four alfalfa clones were evaluated for self-fertility. The most self-fertile 10% of the plants from each family were selected in each population. The selected plants within each level of inbreeding were intercrossed to produce an advanced generation in which the effectiveness of the selection was evaluated. Selection increased both self- and cross-fertility in the advanced generation. Selection was more effective at the F1 level than at the S1 level. Fertility was reduced drastically by inbreeding. The average self-fertility of the S1’s was only about 7% of the cross-fertility of their parental clones. An exponential model was proposed to describe the relationship between seed setting and the coefficient of inbreeding in the developing zygote. This model explained 95% of the variation among 11 unselected populations having differing levels of inbreeding.

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