scholarly journals Field Screening of Arabica Coffee Genotypes against Coffee White Stem Borer <em>(Xylotrechus quadripes) </em>and Leaf Rust <em>(Hemileia vastatrix</em>) Infestation in Kaski, Nepal

2021 ◽  
Author(s):  
Lok Aryal
Keyword(s):  
Leaf Rust ◽  
Stem Borer ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
Field Screening

scholarly journals Stability of Arabica coffee genotype (Coffea arabica L.) against leaf rust (Hemileia vastatrix)

2021 ◽  
Vol 748 (1) ◽  
pp. 012002
Author(s):  
Sabam Malau ◽  
Albiner Siagian ◽  
Maria Rumondang Sihotang
Keyword(s):  
Leaf Rust ◽  
Block Design ◽  
Research Result ◽  
Dry Season ◽  
Environment Interaction ◽  
Rust Disease ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
Coffee Leaf Rust ◽  
Rust Severity

Abstract Coffee is now experiencing a serious threat from fungus Hemileia vastatrix which caused epidemic of rust disease in America, Africa, and Asia. As solution, the use of resistant cultivars is the best way. However, interaction between genotype and environment can change the rank of genotypes that shows instability of these genotypes against leaf rust. Purpose of this research was to study stability of genotypes of Arabica coffee against coffee leaf rust. A field experiment was arranged as factorial randomized complete block design with 2 factors (genotypes and climate zones) with three replication. The observed parameters were branch rust incidence, leaf rust incidence, and leaf rust severity. This research result showed significant genotype x environment interaction in all variables. Length of dry season is the most important factor affecting coffee leaf rust because it had the highest correlation coefficient with leaf rust severity (r = 0.662**). Less length of dry season should be the first criteria for selection of coffee farms. The most desired genotype was G7 which performed low leaf rust severity (7.71%) and had a stable resistance indicated by the same leaf rust severity in all environments and 6 SMg. Due to the significant interaction between genotypes and the environment, the genotype to be planted in a region must be tested in that region first.

scholarly journals Ekspresi β -1,3 glukanase dan kitinase pada tanaman kopi arabika (Coffea arabica L.) tahan dan rentan karat daun Expression of β-1,3 glucanase and chitinase of arabica coffee (Coffea arabica L.) resistant and susceptible against leaf rust disease

2016 ◽  
Vol 72 (2) ◽  
Author(s):  
Asmini BUDIANI ◽  
I SUSANTI ◽  
Surip MAWARDI ◽  
D A SANTOSO ◽  
. SISWANTO
Keyword(s):  
Leaf Rust ◽  
Coffea Arabica ◽  
Rt Pcr ◽  
Rust Disease ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
E Coli ◽  
Genes Encoding ◽  
Pcr Products ◽  
Coffea Arabica L

Summary Leaf rust disease caused by Hemileia vastatrix is considered to be one of the most important diseases on arabica coffee plantation. In order to understand the mechanism underlying resistance of arabica coffee against leaf rust disease, this research was aimed to study expression of β-1,3 glucanase (GLU) and chitinase (CHI) genes in the arabica coffee S1934 and  BLP10 that have been reported respectively as a resistant and susceptible varieties to H. vastatrix. The two varieties were essayed against H. vastatrix, and an RT-PCR (Reverse Transcriptase Polymerase Chain Reaction) using total RNAs  from the S1934 and BLP10, both inoculated with H. vastatrix and uninnoculated was carried out for studying the expression of GLU and CHI. Two primer pairs were designed to amplify the conserved region of GLU and CHI. Amplification products were sequenced and the nucleotide sequences were subjected to BlastX analysis. The result of bioassay confirmed that arabica coffee S1934 was resistant to H. vastatrix, while BLP10 was susceptible.   β-1,3 glucanase was expressed in all of the four samples, the inoculated and uninnoculated S1934, and BLP10 in different degree. S1934 expressed higher GLU compared to BLP10. In the inoculated S1934 the expression of this gene was higher compared to that of the uninoculated one. Expression of CHI was detected only in the S1934, both inoculated and uninoculated. Sequence analysis confirmed that the RT-PCR products were exon regions of genes encoding β-1,3 glucanase dan chitinase respectively. Both of the cDNA fragment have been cloned in E.coli.  Ringkasan Karat daun yang disebabkan oleh jamur Hemileia vastatrix merupakan salah satu penyakit penting pada perkebunan kopi arabika. Untuk memahami mekanisme ketahanan kopi arabika terhadap karat daun, penelitian ini bertujuan untuk mempelajari ekspresi gen β-1,3 glukanase dan kitinase pada varietas kopi arabika S1934 yang dilaporkan tahan karat daun dan varietas BLP10 yang termasuk rentan karat daun. Untuk itu kedua varietas diuji kembali ketahanannya terhadap H. vastatrix melalui bioesai dan dilakukan RT-PCR menggunakan RNA total dari S1934 dan BLP10, baik yang diinokulasi dengan H. vastatrix maupun yang tidak diinokulasi, untuk mempelajari ekspresi gen GLU dan CHI. Dua pasang primer spesifik dirancang untuk mengamplifikasi daerah konservatif kedua gen  tersebut. Hasil amplifikasi disekuen dan dianalisis menggunakan program BlastX. Hasil bioesai mengkonfirmasi bahwa S1934 tahan terhadap H. vastatrix, sedangkan  BLP10 rentan.  β-1,3 glukanase diekspresikan pada kedua varietas, baik yang diinokulasi maupun yang tidak diinokulasi, namun dengan tingkat ekspresi yang sedikit berbeda. Varietas S1934 mengekspresikan β-1,3 glukanase lebih tinggi dibandingkan dengan BLP10. Ekspresi gen tersebut pada S1934 yang diinokulasi lebih tinggi dibandingkan dengan yang tidak diinokulasi. Sedangkan kitinase hanya diekspresikan pada varietas S1934. Hasil sekuensing dan analisis DNA mengkonfirmasi bahwa sekuen hasil RT-PCR merupakan bagian ekson dari gen penyandi β-1,3 glukanase dan kitinase. Kedua fragmen tersebut telah diklon pada E. coli.

scholarly journals Polyphenol Content and Enhancing Plant resistance of Lowland Arabica Coffee

2020 ◽  
Vol 142 ◽  
pp. 01006
Author(s):  
Distiana Wulanjari ◽  
Ketut Anom Wijaya ◽  
Muhammad Ghufron Rosyady ◽  
Ali Wafa
Keyword(s):  
Leaf Rust ◽  
Plant Resistance ◽  
Mineral Elements ◽  
Disease Suppression ◽  
Mineral Element ◽  
Polyphenol Content ◽  
Rust Disease ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
Coffee Cultivation

The production of arabica coffee in Indonesia is still low because of leaf rust disease suppression caused by Hemileia vastatrix. Basically, it can produce well in the overlapping zone (1000-1500 masl). This potential can be used as basic for intensifying arabica coffee cultivation to the lowland. For anticipation steps to reduce the spread of leaf rust can be done by increasing the production of polyphenol as plant resistance. The addition of mineral element such as silica, boron, iodine, calcium, and potassium can stimulate the synthesis of plant polyphenol. In this research, five minerals above were tested into 7 treatment with single factor RCBD, that is without additional of the mineral element, 150 mg L-1 Si, 300 mg L-1 B, 3000 mg L-1 Ca, 20.000 mg L-1 K, 300 mg L-1 I, and the combination/mix of five mineral elements. The laboratory analysis shows that calcium able to produce the highest polyphenol, but it is not a real difference with silica. The polyphenol that synthesized by Si, I, and K was able to reduce the leaf rust incidence until 78,13%, while Ca can reduce the incidence up to 71,88%.

scholarly journals Ekspresi β -1,3 glukanase dan kitinase pada tanaman kopi arabika (Coffea arabica L.) tahan dan rentan karat daun Expression of β-1,3 glucanase and chitinase of arabica coffee (Coffea arabica L.) resistant and susceptible against leaf rust disease

2016 ◽  
Vol 72 (2) ◽  
Author(s):  
Asmini BUDIANI ◽  
I SUSANTI ◽  
Surip MAWARDI ◽  
D A SANTOSO ◽  
. SISWANTO
Keyword(s):  
Leaf Rust ◽  
Coffea Arabica ◽  
Rt Pcr ◽  
Rust Disease ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
E Coli ◽  
Genes Encoding ◽  
Pcr Products ◽  
Coffea Arabica L

Summary Leaf rust disease caused by Hemileia vastatrix is considered to be one of the most important diseases on arabica coffee plantation. In order to understand the mechanism underlying resistance of arabica coffee against leaf rust disease, this research was aimed to study expression of β-1,3 glucanase (GLU) and chitinase (CHI) genes in the arabica coffee S1934 and  BLP10 that have been reported respectively as a resistant and susceptible varieties to H. vastatrix. The two varieties were essayed against H. vastatrix, and an RT-PCR (Reverse Transcriptase Polymerase Chain Reaction) using total RNAs  from the S1934 and BLP10, both inoculated with H. vastatrix and uninnoculated was carried out for studying the expression of GLU and CHI. Two primer pairs were designed to amplify the conserved region of GLU and CHI. Amplification products were sequenced and the nucleotide sequences were subjected to BlastX analysis. The result of bioassay confirmed that arabica coffee S1934 was resistant to H. vastatrix, while BLP10 was susceptible.   β-1,3 glucanase was expressed in all of the four samples, the inoculated and uninnoculated S1934, and BLP10 in different degree. S1934 expressed higher GLU compared to BLP10. In the inoculated S1934 the expression of this gene was higher compared to that of the uninoculated one. Expression of CHI was detected only in the S1934, both inoculated and uninoculated. Sequence analysis confirmed that the RT-PCR products were exon regions of genes encoding β-1,3 glucanase dan chitinase respectively. Both of the cDNA fragment have been cloned in E.coli.  Ringkasan Karat daun yang disebabkan oleh jamur Hemileia vastatrix merupakan salah satu penyakit penting pada perkebunan kopi arabika. Untuk memahami mekanisme ketahanan kopi arabika terhadap karat daun, penelitian ini bertujuan untuk mempelajari ekspresi gen β-1,3 glukanase dan kitinase pada varietas kopi arabika S1934 yang dilaporkan tahan karat daun dan varietas BLP10 yang termasuk rentan karat daun. Untuk itu kedua varietas diuji kembali ketahanannya terhadap H. vastatrix melalui bioesai dan dilakukan RT-PCR menggunakan RNA total dari S1934 dan BLP10, baik yang diinokulasi dengan H. vastatrix maupun yang tidak diinokulasi, untuk mempelajari ekspresi gen GLU dan CHI. Dua pasang primer spesifik dirancang untuk mengamplifikasi daerah konservatif kedua gen  tersebut. Hasil amplifikasi disekuen dan dianalisis menggunakan program BlastX. Hasil bioesai mengkonfirmasi bahwa S1934 tahan terhadap H. vastatrix, sedangkan  BLP10 rentan.  β-1,3 glukanase diekspresikan pada kedua varietas, baik yang diinokulasi maupun yang tidak diinokulasi, namun dengan tingkat ekspresi yang sedikit berbeda. Varietas S1934 mengekspresikan β-1,3 glukanase lebih tinggi dibandingkan dengan BLP10. Ekspresi gen tersebut pada S1934 yang diinokulasi lebih tinggi dibandingkan dengan yang tidak diinokulasi. Sedangkan kitinase hanya diekspresikan pada varietas S1934. Hasil sekuensing dan analisis DNA mengkonfirmasi bahwa sekuen hasil RT-PCR merupakan bagian ekson dari gen penyandi β-1,3 glukanase dan kitinase. Kedua fragmen tersebut telah diklon pada E. coli.

scholarly journals Resistance Variability of Arabica Coffee Genotypes (Coffea arabica L.) to Leaf Rust Disease (Hemileia vastatrix)

2019 ◽  
Vol 6 (2) ◽  
pp. 69
Author(s):  
Sabam Malau
Keyword(s):  
Leaf Rust ◽  
Genotypic Variation ◽  
Leaf Length ◽  
Rust Disease ◽  
Hemileia Vastatrix ◽  
Resistance Level ◽  
Design Data ◽  
Arabica Coffee ◽  
Nested Design ◽  
North Sumatra

<p>Coffee leaf rust disease (<em>Hemileia vastatrix</em>) causes large damage to Arabica coffee plantation in Asia, Africa, and America.  In Indonesia, particularly in North Sumatra, the resistance level of Arabica coffee genotypes is still unknown. The objective of this research was to determine the resistance variability of Arabica coffee genotypes to leaf rust disease and its relation to leaf morphology.  A total of 84 genotypes grown in North Sumatra were selected in November 2015 and 2016, and December 2017 using a nested design.  Data were analyzed using nested design, correlation, stepwise regression, and cluster hierarchy analysis. The result showed that the G56 genotype performed the most resistant to leaf rust disease, with a severity of 5.21%.  The severity of leaf rust disease has high genotypic variation, low heritability, and high genetic advance.  Leaf morphological ratios showed moderate to high genotypic variation and heritability.  The severity of leaf rust (y) significantly correlated with the ratio of leaf length to leaf area (x<sub>1</sub>) and the ratio of leaf length to leaf width (x<sub>2</sub>) with the equation y = 2.04 + 62.48x<sub>1 </sub>- 3.95x<sub>2,</sub> and multiple correlation coefficients R = 0.470 **. By using the leaf rust severity and the two ratios in the cluster analysis, these 84 genotypes were grouped into five clusters.  The result showed that several Arabica coffee genotypes with a high level of resistance to leaf rust disease are potential to be further developed.</p>

scholarly journals Influence of Environmental Conditions and Genetic Background of Arabica Coffee (C. arabica L) on Leaf Rust (Hemileia vastatrix) Pathogenesis

2017 ◽  
Vol 8 ◽  
Author(s):  
Lucile Toniutti ◽  
Jean-Christophe Breitler ◽  
Hervé Etienne ◽  
Claudine Campa ◽  
Sylvie Doulbeau ◽  
...  
Keyword(s):  
Leaf Rust ◽  
Environmental Conditions ◽  
Genetic Background ◽  
Hemileia Vastatrix ◽  
Arabica Coffee

Variability of Genotypes of Arabica Coffee (Coffea arabica L.) in Coffee Leaf Rust (Hemileia vastatrix)

2020 ◽  
Vol 8 (1) ◽  
pp. 21
Author(s):  
Sabam Malau
Keyword(s):  
Cluster Analysis ◽  
Leaf Rust ◽  
Genotypic Variation ◽  
Leaf Length ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
Nested Design ◽  
Coffee Leaf Rust ◽  
Rust Severity ◽  
Resistant Genotypes

Coffee leaf rust (Hemileia vastatrix) caused large damage on Arabica coffee in Asia, Africa, and America. The resistant genotypes released to farmers in Brazil were developed from the existing cultivars. However, the cultivars of Arabica coffee existing in North Sumatra Province of Indonesia is not yet researched to find resistant genotypes. The goal of this reseach was to determine variability of coffee leaf rust and leaf morphology. In total of 84 genotypes growing in this Province were selected using nested design. Data was analyzed using nested design, correlation, stepwise regression, and hierarchical cluster analysis. This research revealed leaf rust severity had high genotypic variation, low heritability, and high genetic adveance. Ratios of leaf morhology showed moderate to high genotypic variation and heritabilities. Leaf rust severity (y) significantly correlated with both ratio of leaf length with leaf area (x1) and ratio of leaf length with leaf width (x2) with equation y = 2,04 + 62,48x1 3,95x2 with coefficient of multiple correlation R = 0,470**. By using leaf rust severity and these two ratios in cluster analysis, one cluster comprised 18 genotypes with medium leaf rust severity. It could be concluded that resistant genotypes of Arabica coffee might be possible to develop from the existing cultivars. Leaf rust severity might not be used as selection parameter in breeding for leaf rust resistance.

scholarly journals Pengujian sifat unggul beberapa klon harapan kopi arabika di kebun percobaan Andungsari, Jawa Timur (Testing for superior traits of some arabica coffee promising clones at Andungsari research station, East Java)

2012 ◽  
Vol 28 (2) ◽  
pp. 62-71 ◽  
Author(s):  
Retno Hulupi ◽  
Surip Mawardi ◽  
Yusianto Yusianto
Keyword(s):  
Leaf Rust ◽  
Genetic Resistance ◽  
Research Station ◽  
Rust Disease ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
Yielding Ability ◽  
Planting Material ◽  
Better Than ◽  
Cup Quality

One of the major diseases which limiting production in arabica coffee is the leaf rust caused by the fungus Hemileia vastatrix, B et Br. Selection and testing on thirteen promising arabica coffee clones were carried out at endemic area for leaf rust disease, Andungsari Research Station, for six fruiting times. The aims of these test were to find out superior planting material as clone with genetic resistance to leaf rust. As the beverage commodities, criterium selections for superiority clone besides resistant to leaf rust and yielding ability of more than 1,5 ton/ha also must be excellent in cup quality. Under this consideration, BP 416 A clone showed as the best high yielding ability i.e. 1,595 kg/ha and stable, besides resistant to leaf rust disease compared to the other clones tested. This clone had good cup quality, better than earlier released variety such as USDA 762 and S 795 although was not better than Andungsari 1 that were planted in the same location. The best physical bean characteristics was obtained on BP 513 A clone wich is derived from S 795 x Caturra red, having 89.2% of normal bean and 18.3% outurn characteristics. However, due to lower yielding and more susceptible to leaf rust, this clone could not be classified as superior clone.

scholarly journals Correlation Between Secondary Metabolites of Leaf and the Resistance to Leaf Rust (Hemileia vastatrix) on Several Arabica Coffee Clones

2019 ◽  
Vol 4 (2) ◽  
pp. 71
Author(s):  
Gatot Subroto ◽  
Dwi Erwin Kusbianto ◽  
Sholeh Avivi ◽  
Slameto Slameto ◽  
Setiyono Setiyono
Keyword(s):  
Antioxidant Activity ◽  
Secondary Metabolites ◽  
Leaf Rust ◽  
Phenolic Content ◽  
Plant Metabolites ◽  
Hemileia Vastatrix ◽  
Arabica Coffee ◽  
Randomized Design ◽  
Coffee Plants ◽  
The Relationship

Indicator of coffee resistance to leaf rust attack (Hemileia vastatrix) is needed to select superior coffee plants resistant to biotic stress. This study aims to find the relationship between the content of secondary metabolites and the intensity of leaf rust attack, so that it becomes a reference in the selection of future coffee plants. The experimental design used was a completely randomized design (CRD) with several coffee clones as a treatment. This test tested 5 Arabica coffee clones consisting of Komasti, Maragogik, Usda, Andong sari, and HDT clones. Each consists of 3 replications, and each replication consists of 2 sample plants. Observations were made by observing the intensity of the attack, and plant metabolites such as phenolic content, flavonoids and antioxidant activity were observed when the leaves had been attacked by Hemileia vastatrix. Correlation of leaf rust attack levels with phenolic content, flavonoids and antioxidant activity showed a relationship between each observation variable. Flavonoid content in certain conditions can be used as an indicator to get Arabica coffee plants that are resistant to the attack of leaf rust.

First report of Rinamba opacicollis Cameron (Hymenoptera: Braconidae, Doryctinae) in India as parasitoid of coffee stem borer, Xylotrechus quadripes (Chevrolat) (Coleoptera: Cerambycidae)

ENTOMON ◽  
2020 ◽  
Vol 44 (4) ◽  
pp. 311-314
Author(s):  
A. Roobakkumar ◽  
H.G. Seetharama ◽  
P. Krishna Reddy ◽  
M.S. Uma ◽  
A. P. Ranjith
Keyword(s):  
Integrated Control ◽  
Host Record ◽  
Stem Borer ◽  
Arabica Coffee ◽  
First Report ◽  
The World ◽  
First Time

Rinamba opacicollis Cameron (Hymenoptera: Braconidae) was collected from Chikkamagaluru, Karnataka, India for the first time from the larvae of white stem borer, Xylotrechus quadripes Chevrolat infesting arabica coffee. Its role in the biological or integrated control of X. quadripes remains to be evaluated. White stem borer could be the first host record of this parasitoid all over the world.

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