scholarly journals Diazotrophic <i>Trichodesmium</i> impact on UV–Vis radiance and pigment composition in the western tropical South Pacific

2018 ◽  
Vol 15 (16) ◽  
pp. 5249-5269 ◽  
Author(s):  
Cécile Dupouy ◽  
Robert Frouin ◽  
Marc Tedetti ◽  
Morgane Maillard ◽  
Martine Rodier ◽  
...  

Abstract. We assessed the influence of the marine diazotrophic cyanobacterium Trichodesmium on the bio-optical properties of western tropical South Pacific (WTSP) waters (18–22∘ S, 160∘ E–160∘ W) during the February–March 2015 OUTPACE cruise. We performed measurements of backscattering and absorption coefficients, irradiance, and radiance in the euphotic zone with a Satlantic MicroPro free-fall profiler and took Underwater Vision Profiler 5 (UPV5) pictures for counting the largest Trichodesmium spp. colonies. Pigment concentrations were determined by fluorimetry and high-performance liquid chromatography and picoplankton abundance by flow cytometry. Trichome concentration was estimated from pigment algorithms and validated by surface visual counts. The abundance of large colonies counted by the UVP5 (maximum 7093 colonies m−3) was well correlated to the trichome concentrations (maximum 2093 trichomes L−1) with an aggregation factor of 600. In the Melanesian archipelago, a maximum of 4715 trichomes L−1 was enumerated in pump samples (3.2 m) at 20∘ S, 167 30∘ E. High Trichodesmium abundance was always associated with absorption peaks of mycosporine-like amino acids (330, 360 nm) and high particulate backscattering, but not with high Chl a fluorescence or blue particulate absorption (440 nm). Along the west-to-east transect, Trichodesmium together with Prochlorococcus represented the major part of total chlorophyll concentration; the contribution of other groups were relatively small or negligible. The Trichodesmium contribution to total chlorophyll concentration was the highest in the Melanesian archipelago around New Caledonia and Vanuatu (60 %), progressively decreased to the vicinity of the islands of Fiji (30 %), and reached a minimum in the South Pacific Gyre where Prochlorococcus dominated chlorophyll concentration. The contribution of Trichodesmium to zeaxanthin was respectively 50, 40 and 20 % for these regions. During the OUTPACE cruise, the relationship between normalized water-leaving radiance (nLw) in the ultraviolet and visible and chlorophyll concentration was similar to that found during the BIOSOPE cruise in the eastern tropical Pacific. Principal component analysis (PCA) of OUTPACE data showed that nLw at 305, 325, 340, 380, 412 and 440 nm was strongly correlated to chlorophyll and zeaxanthin, while nLw at 490 and 565 nm exhibited lower correlations. These results, as well as differences in the PCA of BIOSOPE data, indicated that nLw variability in the greenish blue and yellowish green during OUTPACE was influenced by other variables associated with Trichodesmium presence, such as backscattering coefficient, phycoerythrin fluorescence and/or zeaxanthin absorption, suggesting that Trichodesmium detection should involve examination of nLw in this spectral domain.

2018 ◽  
Author(s):  
Cécile Dupouy ◽  
Robert Frouin ◽  
Marc Tedetti ◽  
Morgane Maillard ◽  
Martine Rodier ◽  
...  

Abstract. We assessed the influence of the marine diazotrophic cyanobacterium Trichodesmium on the bio-optical properties of South West tropical Pacific waters (18–22° S, 160° E–160° W) during the February–March 2015 OUTPACE cruise. We performed measurements of backscattering and absorption coefficients, irradiance, and radiance, in the euphotic zone, and took Underwater Vision Profiler 5 (UPV5) pictures for counting the largest Trichodesmium spp. colonies. Pigment concentrations were determined by fluorimetry and by high performance liquid chromatography and picoplankton abundance by flow cytometry. Trichome concentration was estimated from pigment algorithms and validated by surface visual counts. In result, the large colonies were well correlated to the trichome concentration estimates (though with a large factor of 600 to 900, due to aggregation processes). Large Trichodesmium abundance was always associated with particulate absorption at a peak of mycosporine-like amino acid absorption, and high particulate backscattering, but not with high fluorescence, high chlorophyll-a concentration, or blue particulate absorption in the water column. Along the West to East transect, Trichodesmium together with Prochlorococcus represented the major part of total chlorophyll and the other groups were negligible. Trichodesmium contribution to chlorophyll was the highest in the Melanesian Archipelago around New Caledonia and Vanuatu, progressively decreased to the vicinity of the Fiji Islands, and reached a minimum in the South Pacific gyre where the contribution of Prochlorococcus was maximum. At the frontal LDB, Trichodesmium and Prochlorococcus has almost same contributions. The relationship between normalized water-leaving radiance, in the ultraviolet and visible domains, nLw, and chlorophyll was generally similar to that found in the Eastern tropical at BIOSOPE. Principal component analysis (PCA) of OUTPACE data showed that nLw were strongly correlated to chlorophyll except in the green and yellow domains. These results, as well as differences in the PCA of BIOSOPE data, suggested that nLw variability in the green and yellow during OUTPACE was influenced by other variables, associated with Trichodesmium presence as the backscattering coefficient, phycoerythrin fluorescence, and/or zeaxanthin absorption. Trichodesmium detection should then involve examination of nLw at the green and yellow wavelengths.


2018 ◽  
Vol 69 (4) ◽  
pp. 249-255
Author(s):  
Aliu Sali ◽  
Dukagjin Zeka ◽  
Shukri Fetahu ◽  
Imer Rusinovci ◽  
Hans-Peter Kaul

Summary The objective of this work was to investigate the effect of selenium (Se) on the biomass production and the contents of photosynthetically active pigments. The pot experiment included two maize genotypes: hybrid 408BC originating from Croatia and a local maize population from Kosovo. The doses of Se applied were 0, 1.30, 6.57, 13, and 26 mg kg−1. The lowest Se dose (1.30 mg Se kg−1) had a positive effect on shoot and root biomass production as well as on the contents of chlorophyll b (Chl-b), total chlorophyll, and carotenoids (just for the hybrid). Chlorophyll a (Chl-a) was reduced with increasing Se doses, whereas chlorophyll b (Chl-b) and total chlorophyll further increased with medium Se doses. The highest Se dose strongly reduced biomass and the contents of photosynthetically active pigments. Chl-a and carotenoids positively correlated with shoot (for both genotypes) and root (for the hybrid) biomass, whereas no correlation was observed between Chl-b and biomass. Low amounts of Se application are favorable for biomass production and chlorophyll and carotenoids contents, whereas high amounts of Se application negatively affect both.


2012 ◽  
Vol 39 (7) ◽  
pp. 588 ◽  
Author(s):  
Júlio Osório ◽  
Maria Leonor Osório ◽  
Anabela Romano

We investigated the use of spectral reflectance techniques to monitor the physiological responses of Ceratonia siliqua L. seedlings exposed to different levels of water availability under normal (25 : 18°C, day : night) and elevated (32 : 21°C, day : night) temperatures. Three spectral reflectance indices (photochemical reflectance index, PRI; water index, WI; red edge position, REP) were measured along with water status, chlorophyll fluorescence and chlorophyll concentration variables in the leaves of well watered, moderately stressed, severely stressed and rehydrated plants under each temperature regime. The PSII effective photochemical efficiency (φ2) and the intrinsic efficiency of open PSII centres (F′v/F′m) correlated significantly with PRI, and these three variables loaded heavily onto the same principal component of a three-factor principal component analysis solution. Water concentration (WC) and the succulence index (SI) were more strongly correlated with WI than either water potential (ΨPD) or relative water content (RWC). Accordingly, WI, WC and SI were combined in the second principal component, and ΨPD and RWC in the third. Our results provide clear evidence for interaction between water availability and temperature in the WI and the PRI response segments of the reflectance curves. Elevated temperature inhibited the recovery of WI spectral segments more than that of the PRI segments in SS plants. REP showed a strongly positive linear relationship with leaf total chlorophyll concentration across all water and temperature treatment combinations. PRI, WI and REP are therefore reliable markers that can be used to monitor φ2, WC and total chlorophyll concentration, respectively, in C. siliqua seedlings under drought and temperature stress.


2020 ◽  
Vol 8 (5) ◽  
pp. 311 ◽  
Author(s):  
Ario Damar ◽  
Franciscus Colijn ◽  
Karl-Juergen Hesse ◽  
Fery Kurniawan

In this study, the composition and distribution of phytoplankton pigments and its relation to nutrients and light was investigated, and an elaboration of using it as a proxy for phytoplankton group composition followed, in different nutrient-level tropical bays of Indonesia. Phytoplankton pigment analysis by using High Performance Liquid Chromatographer (HPLC) resulted in a set of pigments of chlorophyll-a (Chl-a), chlorophyll-b (Chl-b), chlorophyll-c (Chl-c), lutein, zeaxanthin, fucoxanthin, peridinin, diadinoxanthin, and ß-carotene. Linear multi regression and multivariate principal component analysis (PCA) showed that algae pigments correlate positively with nutrients and are not significantly correlated with underwater light and water transparency, suggesting important roles of nutrients for phytoplankton development in tropical estuaries. There were differences in total algae pigment concentration between bays (p < 0.005), showing that the eutrophic system of Jakarta Bay was the highest (mean of 10.55 μg L−1), Lampung Bay was the second highest (mean of 3.37 μg L−1), and the lowest were the oligotrophic waters of Semangka Bay (mean of 0.80 μg L−1). At all bays studied, high nutrient sites, which were located in the river mouths and inner part of the bay, were always characterized by high phytoplankton pigment concentration. Pigment composition had a high correlation with phytoplankton composition: diatoms with fucoxanthin, dinoflagellates with peridinin and Chl-c, and Chlorophyceae with Chl-b and lutein. This conformity suggests that algae pigments can be used as a biomarker for phytoplankton group determination along with microscopic species identification.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6896
Author(s):  
Joape Ginigini ◽  
Gaël J. Lecellier ◽  
Mael Nicolas ◽  
Mohammed Nour ◽  
Edouard Hnawia ◽  
...  

BackgroundDifferent parts of the treeCalophyllum inophyllumL. (nuts, leaves, roots, bark, fruits, nut oil and resin) are used as traditional medicines and cosmetics in most of the Pacific Islands. The oil efficiency as a natural cure and in traditional cosmetics has been largely described throughout the South Pacific, which led us to investigateC. inophyllum’s chemical and genetic diversity. A correlative study of the nut resin and leaf DNA from three distinct archipelagos in the South Pacific was carried out in order to identify diversity patterns inC. inophyllumacross the South Pacific.MethodsCalophyllum inophyllumplants were sampled from French Polynesia, New Caledonia and Fiji. We extracted tamanu oil (nut oil) resin for chemo-diversity studies and sampled leaf tissues for genetic studies. We applied an analysis method designed for small quantities (at a microscale level), and used High Performance Liquid Chromatography (HPLC) to establish the chemo-diversity of tamanu oil resin. In-house standards were co-eluted for qualitative determination. Genetic diversity was assessed using chloroplast barcoding markers (the Acetyl-CoA carboxylase (accD) gene and the psaA-ycf3 intergenic spacer region).ResultsOur HPLC analysis revealed 11 previously known tamanu oil constituents, with variability among plant samples. We also isolated and characterized two new neoflavonoids from tamanu oil resin namely, tamanolide E1 and E2 which are diastereoisomers. Although genetic analysis revealed low genetic variation, our multivariate analysis (PCA) of the tamanu oil resin chemical profiles revealed differentiation among geographic regions.ConclusionWe showed here that chromatographic analysis using formalized in-house standards of oil resin compounds for co-elution studies against oil resin samples could identify patterns of variation among samples ofC. inophyllum,and discriminate samples from different geographical origins.


Author(s):  
Firmansyah A. ◽  
Winingsih W. ◽  
Soebara Y S

Analysis of natural product remain challenging issues for analytical chemist, since natural products are complicated system of mixture. The most popular methods of choice used for quality control of raw material and finished product are high performance liquid chromatography (HPLC), gas chromatography (GC) and mass spectrometry (MS). The utilization of FTIR-ATR (Fourier Transform Infrared-Attenuated Total Reflectance) method in natural product analysis is still limited. This study attempts to expand the use of FTIR spectroscopy in authenticating Indonesian coffee powder.The coffee samples studied were taken from nine regions in Indonesia, namely Aceh Gayo, Flores, Kintamani, Mandheling, Papua, Sidikalang, Toraja, Kerinci and Lampung.The samples in the form of coffee bean from various regions were powdered . The next step conducted was to determine the spectrum using the FTIR-ATR (Attenuated Total Reflectance) using ZnSe crystal of 8000 resolution. Spectrum samples, then, were analyzed using chemometrics. The utilized chemometric model was the principal component analysis (PCA) and cluster analysis (CA). Based on the chemometric analysis, there are similarities between Aceh Gayo coffee with Toraja coffee, Mandailing coffee, Kintamani coffee and Flores coffee. Sidikalang coffee has a similarity to Flores coffee; Papua coffee has a similarity to Sidikalang coffee; Lampung coffee has a similarity to Sidikalang coffee, while Kerinci coffee has a similarity to Papua coffee.


Toxins ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 434
Author(s):  
Pascaline Bahati ◽  
Xuejun Zeng ◽  
Ferdinand Uzizerimana ◽  
Ariunsaikhan Tsoggerel ◽  
Muhammad Awais ◽  
...  

In the food industry, microbiological safety is a major concern. Mycotoxin patulin represents a potential health hazard, as it is heat-resistant and may develop at any stage during the food chain, especially in apple-based products, leading to severe effects on human health, poor quality products, and profit reductions. The target of the study was to identify and characterize an excellent adsorbent to remove patulin from apple juice efficiently and to assess its adsorption mechanism. To prevent juice fermentation and/or contamination, autoclaving was involved to inactivate bacteria before the adsorption process. The HPLC (high-performance liquid chromatography) outcome proved that all isolated strains from kefir grains could reduce patulin from apple juice. A high removal of 93% was found for juice having a 4.6 pH, 15° Brix, and patulin concentration of 100 μg/L by Lactobacillus kefiranofacien, named JKSP109, which was morphologically the smoothest and biggest of all isolates in terms of cell wall volume and surface area characterized by SEM (Scanning electron microscopy) and TEM (transmission electron microscopy). C=O, OH, C–H, and N–O were the main functional groups engaged in patulin adsorption indicated by FTIR (Fourier transform–infrared). E-nose (electronic nose) was performed to evaluate the aroma quality of the juices. PCA (Principal component analysis) results showed that no significant changes occurred between control and treated juice.


Molecules ◽  
2021 ◽  
Vol 26 (6) ◽  
pp. 1546
Author(s):  
Ioanna Dagla ◽  
Anthony Tsarbopoulos ◽  
Evagelos Gikas

Colistimethate sodium (CMS) is widely administrated for the treatment of life-threatening infections caused by multidrug-resistant Gram-negative bacteria. Until now, the quality control of CMS formulations has been based on microbiological assays. Herein, an ultra-high-performance liquid chromatography coupled to ultraviolet detector methodology was developed for the quantitation of CMS in injectable formulations. The design of experiments was performed for the optimization of the chromatographic parameters. The chromatographic separation was achieved using a Waters Acquity BEH C8 column employing gradient elution with a mobile phase consisting of (A) 0.001 M aq. ammonium formate and (B) methanol/acetonitrile 79/21 (v/v). CMS compounds were detected at 214 nm. In all, 23 univariate linear-regression models were constructed to measure CMS compounds separately, and one partial least-square regression (PLSr) model constructed to assess the total CMS amount in formulations. The method was validated over the range 100–220 μg mL−1. The developed methodology was employed to analyze several batches of CMS injectable formulations that were also compared against a reference batch employing a Principal Component Analysis, similarity and distance measures, heatmaps and the structural similarity index. The methodology was based on freely available software in order to be readily available for the pharmaceutical industry.


Author(s):  
Marta Oliveira ◽  
Sílvia Capelas ◽  
Cristina Delerue-Matos ◽  
Simone Morais

Grilling activities release large amounts of hazardous pollutants, but information on restaurant grill workers’ exposure to polycyclic aromatic hydrocarbons (PAHs) is almost inexistent. This study assessed the impact of grilling emissions on total workers’ exposure to PAHs by evaluating the concentrations of six urinary biomarkers of exposure (OHPAHs): naphthalene, acenaphthene, fluorene, phenanthrene, pyrene, and benzo(a)pyrene. Individual levels and excretion profiles of urinary OHPAHs were determined during working and nonworking periods. Urinary OHPAHs were quantified by high-performance liquid-chromatography with fluorescence detection. Levels of total OHPAHs (∑OHPAHs) were significantly increased (about nine times; p ≤ 0.001) during working comparatively with nonworking days. Urinary 1-hydroxynaphthalene + 1-hydroxyacenapthene and 2-hydroxyfluorene presented the highest increments (ca. 23- and 6-fold increase, respectively), followed by 1-hydroxyphenanthrene (ca. 2.3 times) and 1-hydroxypyrene (ca. 1.8 times). Additionally, 1-hydroxypyrene levels were higher than the benchmark, 0.5 µmol/mol creatinine, in 5% of exposed workers. Moreover, 3-hydroxybenzo(a)pyrene, biomarker of exposure to carcinogenic PAHs, was detected in 13% of exposed workers. Individual excretion profiles showed a cumulative increase in ∑OHPAHs during consecutive working days. A principal component analysis model partially discriminated workers’ exposure during working and nonworking periods showing the impact of grilling activities. Urinary OHPAHs were increased in grill workers during working days.


Metabolites ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 165
Author(s):  
Chanel J. Pretorius ◽  
Fidele Tugizimana ◽  
Paul A. Steenkamp ◽  
Lizelle A. Piater ◽  
Ian A. Dubery

The first step in crop introduction—or breeding programmes—requires cultivar identification and characterisation. Rapid identification methods would therefore greatly improve registration, breeding, seed, trade and inspection processes. Metabolomics has proven to be indispensable in interrogating cellular biochemistry and phenotyping. Furthermore, metabolic fingerprints are chemical maps that can provide detailed insights into the molecular composition of a biological system under consideration. Here, metabolomics was applied to unravel differential metabolic profiles of various oat (Avena sativa) cultivars (Magnifico, Dunnart, Pallinup, Overberg and SWK001) and to identify signatory biomarkers for cultivar identification. The respective cultivars were grown under controlled conditions up to the 3-week maturity stage, and leaves and roots were harvested for each cultivar. Metabolites were extracted using 80% methanol, and extracts were analysed on an ultra-high performance liquid chromatography (UHPLC) system coupled to a quadrupole time-of-flight (qTOF) high-definition mass spectrometer analytical platform. The generated data were processed and analysed using multivariate statistical methods. Principal component analysis (PCA) models were computed for both leaf and root data, with PCA score plots indicating cultivar-related clustering of the samples and pointing to underlying differential metabolic profiles of these cultivars. Further multivariate analyses were performed to profile differential signatory markers, which included carboxylic acids, amino acids, fatty acids, phenolic compounds (hydroxycinnamic and hydroxybenzoic acids, and associated derivatives) and flavonoids, among the respective cultivars. Based on the key signatory metabolic markers, the cultivars were successfully distinguished from one another in profiles derived from both leaves and roots. The study demonstrates that metabolomics can be used as a rapid phenotyping tool for cultivar differentiation.


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