scholarly journals Structure and expression analysis of seven salt-related ERF genes of Populus

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e10206
Author(s):  
Juanjuan Huang ◽  
Shengji Wang ◽  
Xingdou Wang ◽  
Yan Fan ◽  
Youzhi Han
Keyword(s):  
Abiotic Stress ◽  
Stress Tolerance ◽  
Expression Pattern ◽  
Target Genes ◽  
Abiotic Stress Tolerance ◽  
Critical Role ◽  
Plant Stress ◽  
Regulation Mechanism ◽  
Rna Seq ◽  
Go Annotation

Ethylene response factors (ERFs) are plant-specific transcription factors (TFs) that play important roles in plant growth and stress defense and have received a great amount of attention in recent years. In this study, seven ERF genes related to abiotic stress tolerance and response were identified in plants of the Populus genus. Systematic bioinformatics, including sequence phylogeny, genome organisation, gene structure, gene ontology (GO) annotation, etc. were detected. Expression-pattern of these seven ERF genes were analyzed using RT-qPCR and cross validated using RNA-Seq. Data from a phylogenetic tree and multiple alignment of protein sequences indicated that these seven ERF TFs belong to three subfamilies and contain AP2, YRG, and RAYD conserved domains, which may interact with downstream target genes to regulate the plant stress response. An analysis of the structure and promoter region of these seven ERF genes showed that they have multiple stress-related motifs and cis-elements, which may play roles in the plant stress-tolerance process through a transcriptional regulation mechanism; moreover, the cellular_component and molecular_function terms associated with these ERFs determined by GO annotation supported this hypothesis. In addition, the spatio-temporal expression pattern of these seven ERFs, as detected using RT-qPCR and RNA-seq, suggested that they play a critical role in mediating the salt response and tolerance in a dynamic and tissue-specific manner. The results of this study provide a solid basis to explore the functions of the stress-related ERF TFs in Populus abiotic stress tolerance and development process.

scholarly journals Mining Fiskeby III and Mandarin (Ottawa) Expression Profiles to Understand Iron Stress Tolerant Responses in Soybean

2021 ◽  
Vol 22 (20) ◽  
pp. 11032
Author(s):  
Jamie A. O’Rourke ◽  
Michael J. Morrisey ◽  
Ryan Merry ◽  
Mary Jane Espina ◽  
Aaron J. Lorenz ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Iron Deficiency ◽  
Gene Silencing ◽  
Stress Tolerance ◽  
Abiotic Stresses ◽  
Yield Loss ◽  
Abiotic Stress Tolerance ◽  
Iron Stress ◽  
Rna Seq ◽  
Virus Induced Gene Silencing

The soybean (Glycine max L. merr) genotype Fiskeby III is highly resistant to a multitude of abiotic stresses, including iron deficiency, incurring only mild yield loss during stress conditions. Conversely, Mandarin (Ottawa) is highly susceptible to disease and suffers severe phenotypic damage and yield loss when exposed to abiotic stresses such as iron deficiency, a major challenge to soybean production in the northern Midwestern United States. Using RNA-seq, we characterize the transcriptional response to iron deficiency in both Fiskeby III and Mandarin (Ottawa) to better understand abiotic stress tolerance. Previous work by our group identified a quantitative trait locus (QTL) on chromosome 5 associated with Fiskeby III iron efficiency, indicating Fiskeby III utilizes iron deficiency stress mechanisms not previously characterized in soybean. We targeted 10 of the potential candidate genes in the Williams 82 genome sequence associated with the QTL using virus-induced gene silencing. Coupling virus-induced gene silencing with RNA-seq, we identified a single high priority candidate gene with a significant impact on iron deficiency response pathways. Characterization of the Fiskeby III responses to iron stress and the genes underlying the chromosome 5 QTL provides novel targets for improved abiotic stress tolerance in soybean.

scholarly journals Molecular Abiotic Stress Tolerans Strategies: From Genetic Engineering to Genome Editing Era

2020 ◽  
Author(s):  
Sinan Meriç ◽  
Alp Ayan ◽  
Çimen Atak
Keyword(s):  
Abiotic Stress ◽  
Genetic Engineering ◽  
Stress Tolerance ◽  
Genome Editing ◽  
Target Genes ◽  
Abiotic Stress Tolerance ◽  
Industrial Applications ◽  
Genomic Engineering ◽  
Transporter Protein ◽  
Abiotic Stress Factors

In last decades, plants were increasingly subjected to multiple environmental abiotic stress factors as never before due to their stationary nature. Excess urbanization following the intense industrial applications introduced combinations of abiotic stresses as heat, drought, salinity, heavy metals etc. to plants in various intensities. Technological advancements brought novel biotechnological tools to the abiotic stress tolerance area as an alternative to time and money consuming traditional crop breeding activities as well as they brought vast majority of the problem themselves. Discoveries of single gene (as osmoprotectant, detoxyfying enzyme, transporter protein genes etc.) and multi gene (biomolecule synthesis, heat shock protein, regulatory transcription factor and signal transduction genes etc.) targets through functional genomic approaches identified abiotic stress responsive genes through EST based cDNA micro and macro arrays. In nowadays, genetic engineering and genome editing tools are present to transfer genes among different species and modify these target genes in site specific, even single nuclotide specific manner. This present chapter will evaluate genomic engineering approaches and applications targeting these abiotic stress tolerance responsive mechanisms as well as future prospects of genome editing applications in this field.

scholarly journals Lysine, Lysine-Rich, Serine, and Serine-Rich Proteins: Link Between Metabolism, Development, and Abiotic Stress Tolerance and the Role of ncRNAs in Their Regulation

2020 ◽  
Vol 11 ◽  
Author(s):  
P. B. Kavi Kishor ◽  
Renuka Suravajhala ◽  
Guddimalli Rajasheker ◽  
Nagaraju Marka ◽  
Kondle Kavya Shridhar ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Tolerance ◽  
Plant Development ◽  
Abiotic Stresses ◽  
Abiotic Stress Tolerance ◽  
Expression Patterns ◽  
Critical Role ◽  
Large Body ◽  
Sr Proteins ◽  
Plant Metabolism

Lysine (Lys) is indispensable nutritionally, and its levels in plants are modulated by both transcriptional and post-transcriptional control during plant ontogeny. Animal glutamate receptor homologs have been detected in plants, which may participate in several plant processes through the Lys catabolic products. Interestingly, a connection between Lys and serotonin metabolism has been established recently in rice. 2-Aminoadipate, a catabolic product of Lys appears to play a critical role between serotonin accumulation and the color of rice endosperm/grain. It has also been shown that expression of some lysine-methylated proteins and genes encoding lysine-methyltransferases (KMTs) are regulated by cadmium even as it is known that Lys biosynthesis and its degradation are modulated by novel mechanisms. Three complex pathways co-exist in plants for serine (Ser) biosynthesis, and the relative preponderance of each pathway in relation to plant development or abiotic stress tolerance are being unfolded slowly. But the phosphorylated pathway of L-Ser biosynthesis (PPSB) appears to play critical roles and is essential in plant metabolism and development. Ser, which participates indirectly in purine and pyrimidine biosynthesis and plays a pivotal role in plant metabolism and signaling. Also, L-Ser has been implicated in plant responses to both biotic and abiotic stresses. A large body of information implicates Lys-rich and serine/arginine-rich (SR) proteins in a very wide array of abiotic stresses. Interestingly, a link exists between Lys-rich K-segment and stress tolerance levels. It is of interest to note that abiotic stresses largely influence the expression patterns of SR proteins and also the alternative splicing (AS) patterns. We have checked if any lncRNAs form a cohort of differentially expressed genes from the publicly available PPSB, sequence read archives of NCBI GenBank. Finally, we discuss the link between Lys and Ser synthesis, catabolism, Lys-proteins, and SR proteins during plant development and their myriad roles in response to abiotic stresses.

scholarly journals Get Together: The Interaction between Melatonin and Salicylic Acid as a Strategy to Improve Plant Stress Tolerance

Agronomy ◽  
2020 ◽  
Vol 10 (10) ◽  
pp. 1486
Author(s):  
Alfonso Albacete
Keyword(s):  
Salicylic Acid ◽  
Abiotic Stress ◽  
Stress Tolerance ◽  
Stress Responses ◽  
Abiotic Stress Tolerance ◽  
Plant Stress ◽  
Future Research ◽  
Biotic And Abiotic Stress ◽  
Plant Stress Responses ◽  
Action Model

Both melatonin and salicylic acid (SA) have been demonstrated to play multiple functions in plant physiological processes and biotic and abiotic stress responses. So far, these regulatory molecules have been separately studied despite sharing a common biosynthetic precursor and their similar physiological actions and stress regulation signals. The review published in Agronomy by Hernández-Ruiz and Arnao entitled “Relationship of melatonin and salicylic acid in biotic/abiotic stress responses” highlights the coincidences and similarities of both regulatory molecules via a thorough literature search and proposes an action model for their interaction in plant stress responses. Despite the undeniable interest and potential impact of this view, it has been focused only on coincident regulatory aspects of SA and melatonin, and the antioxidant-mediated model of interaction that has been proposed is rather speculative and needs to be mechanistically demonstrated. Nevertheless, the mentioned review leads to future research on the melatonin-SA crosstalk to improve biotic and abiotic stress tolerance, which is of utmost importance to ensure food production in the actual age of pandemics and for the upcoming climate crisis scenario.

scholarly journals ROS Regulation Mechanism for Mitigation of Abiotic Stress in Plants

2021 ◽  
Author(s):  
Asha Kumari ◽  
Mahendar Singh Bhinda ◽  
Sachin Sharma ◽  
Manoj Kumar Chitara ◽  
Ashim Debnath ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Tolerance ◽  
Hydroxyl Radicals ◽  
Stress Responses ◽  
Abiotic Stress Tolerance ◽  
Regulation Mechanism ◽  
Abiotic And Biotic Stress ◽  
Ros Scavenging ◽  
Antioxidant Defense Systems ◽  
Careful Manipulation

Plants respond to various stresses during their lifecycle among which abiotic stress is the most severe one comprising heat, cold, drought, salinity, flooding, etc. which take a heavy toll on crop yield worldwide in every corresponding year. ROS has a dual role in abiotic stress mechanisms where, at high levels, they are toxic to cells while at the same time, the same molecule can function as a signal transducer that activates a local as well as a systemic plant defense response against stress. The most common ROS species are Hydrogen peroxide (H2O2), Superoxide anions (O2-), Hydroxyl radicals (OH-), and Singlet oxygen (1O2) which are results of physiological metabolism often controlled by enzymatic and non-enzymatic antioxidant defense systems. ROS generally accumulate in plants during abiotic and biotic stress conditions resulting in oxidative damage which ultimately leads to programmed cell death. Many ROS scavenging pathways have been well studied against stress responses. Through careful manipulation of ROS levels in plants, we can enhance stress tolerance in plants under unfavorable environmental conditions. This chapter presents an overview of ROS regulation in plants and the essential enzymes involved in the abiotic stress tolerance mechanisms which are thoroughly discussed below.

Calcium-Dependent Protein Kinases (CDPK) in Abiotic Stress Tolerance

2018 ◽  
Vol 34 (2) ◽  
pp. 259-265 ◽  
Author(s):  
Hemant B Kardile ◽  
◽  
Vikrant ◽  
Nirmal Kant Sharma ◽  
Ankita Sharma ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Tolerance ◽  
Protein Kinases ◽  
Abiotic Stress Tolerance ◽  
Calcium Dependent ◽  
Dependent Protein ◽  
Calcium Dependent Protein Kinases

Roles of Nitric Oxide in Conferring Multiple Abiotic Stress Tolerance in Plants and Crosstalk with Other Plant Growth Regulators

2021 ◽  
Author(s):  
Rajesh Kumar Singhal ◽  
Hanuman Singh Jatav ◽  
Tariq Aftab ◽  
Saurabh Pandey ◽  
Udit Nandan Mishra ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
Abiotic Stress ◽  
Plant Growth ◽  
Stress Tolerance ◽  
Plant Growth Regulators ◽  
Growth Regulators ◽  
Abiotic Stress Tolerance

scholarly journals Genome-Wide Identification and Expression Profiling of the PDI Gene Family Reveals Their Probable Involvement in Abiotic Stress Tolerance in Tomato (Solanum lycopersicum L.)

Genes ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 23
Author(s):  
Antt Htet Wai ◽  
Muhammad Waseem ◽  
A B M Mahbub Morshed Khan ◽  
Ujjal Kumar Nath ◽  
Do Jin Lee ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Gene Family ◽  
Stress Tolerance ◽  
Solanum Lycopersicum ◽  
Expression Profiling ◽  
Abiotic Stress Tolerance ◽  
Dependent Manner ◽  
Solanum Lycopersicum L ◽  
Genome Wide ◽  
Protein Disulfide

Protein disulfide isomerases (PDI) and PDI-like proteins catalyze the formation and isomerization of protein disulfide bonds in the endoplasmic reticulum and prevent the buildup of misfolded proteins under abiotic stress conditions. In the present study, we conducted the first comprehensive genome-wide exploration of the PDI gene family in tomato (Solanum lycopersicum L.). We identified 19 tomato PDI genes that were unevenly distributed on 8 of the 12 tomato chromosomes, with segmental duplications detected for 3 paralogous gene pairs. Expression profiling of the PDI genes revealed that most of them were differentially expressed across different organs and developmental stages of the fruit. Furthermore, most of the PDI genes were highly induced by heat, salt, and abscisic acid (ABA) treatments, while relatively few of the genes were induced by cold and nutrient and water deficit (NWD) stresses. The predominant expression of SlPDI1-1, SlPDI1-3, SlPDI1-4, SlPDI2-1, SlPDI4-1, and SlPDI5-1 in response to abiotic stress and ABA treatment suggested they play regulatory roles in abiotic stress tolerance in tomato in an ABA-dependent manner. Our results provide new insight into the structure and function of PDI genes and will be helpful for the selection of candidate genes involved in fruit development and abiotic stress tolerance in tomato.

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