Thermal Behavior of Ceramic Bodies Based on Estonian Clay from the Arumetsa Deposit with Oil Shale Ash and Clinker Dust Additives

The thermal behavior of green clay samples from the Arumetsa and Füzérradvány deposits (Hungary) and the influence of two new types of Estonian oil shale (OS) ashes and cement bypass dust (clinker dust) additives on it were the objectives of this study. Thermal and thermo-dilatometric analysis methods were applied using a Setaram Setsys 1750 thermoanalyzer coupled with a Pfeiffer Omnistar spectrometer and a Setaram Setsys 1750 CS Evolution dilatometer. The kinetic parameters were calculated based on the differential isoconversional method of Friedman. The results of the thermal analysis of clays and blends indicated the emission of physically bound water at 200–250 °C. At temperatures from 200–250 °C to 550–600 °C the release of water is caused by oxidation of organic matter and dehydroxylation of different clay minerals like illite, illite-smectite, mica and kaolin. From blends, in addition, also from the decomposition of portlandite. The emission of CO2 at these temperatures was a result of the oxidation of organic matter contained in the clays. In the temperature range from 550–600 °C to 800–900 °C, the mass loss was caused by ongoing dehydroxylation processes in clay minerals but was mainly due to the decomposition of the carbonates contained in the OS ashes and clinker dust. These processes were accompanied by contraction and expansion of the ceramic bodies with the corresponding changes in the SSA and porosity values of the samples. Therefore, the decomposition of the clays took place in one step which blends in two steps. At first, dehydroxylation of the clay minerals occurs, followed by decomposition of the carbonates. The value of the conversion-dependent activation energy E along the reaction progress α varied for the Arumetsa and illitic clay between 75–182 and 9–206 kJ mol−1, respectively. For the blends based on Arumetsa and illitic clay, the activation energy of the first step varied between 14–193 and 5–205 kJ mol−1, and for the second step, it was between 15–390 and 135–235 kJ mol−1, respectively, indicating the complex mechanism of the processes.

Genome Assemblies of the Warthog and Kenyan Domestic Pig Provide Insights into Suidae Evolution and Candidate Genes for African Swine Fever Tolerance

As warthog (Phacochoerus africanus) has innate immunity against African swine fever (ASF), it is critical to understanding the evolutionary novelty of warthog to explain its specific ASF resistance. Here, we present two completed new genomes of one warthog and one Kenyan domestic pig, as the fundamental genomic references to decode the genetic mechanism on ASF tolerance. Our results indicated, multiple genomic variations, including gene losses, independent contraction and expansion of specific gene families, likely moulded warthog's genome to adapt the environment. Importantly, the analysis of presence and absence of genomic sequences revealed that, the warthog genome had a DNA sequence absence of the lactate dehydrogenase B (LDHB) gene on chromosome 2 compared to the reference genome. The overexpression and siRNA of LDHB indicated that its inhibition on the replication of ASFV. The Combining with large scale sequencing data of 123 pigs from all over world, contraction and expansion of TRIM genes families revealed that TRIM family genes in the warthog genome were potentially responsible for its tolerance to ASF. Our results will help further improve the understanding of genetic resistance ASF in pigs.

Quantum Theory of Gravity and Arthur Eddingtons Fundamental Theory

For the first time, the article presents the Quantum Theory of Gravity, covering not only the microcosm of elementary particles, but also the macrocosm of planets, stars and black holes. This relational approach to gravity was consistently presented in Arthur Eddington's monograph “Fundamental Theory”. In the theory of quantum gravity proposes to consider instead of gravity holes in the curved space-time of Einstein's general relativity, gravitational funnels formed by the rotation of planets, stars and galaxies in a dark matter halo. The change in the gravitational potential in the funnels occurs instantly in all areas of the gravitational funnel space in accordance with the pressure gradient described by the Euler-Bernoulli equation for superfluid continuous media. The new cosmological theory represents the evolution of the universe and dark holes without a singularity. The disordered alternation of the processes of contraction and expansion of individual regions of the infinite Universe realizes the circulation of baryonic and dark matter, which allows it to exist indefinitely, bypassing the state of equilibrium. Numerical modeling allows us to assert that the theory of quantum gravity is the most reliable of the three generally accepted theories of gravity.

Filament Eruption Driving EUV Loop Contraction and Then Expansion above a Stable Filament

We analyze the observations of EUV loop evolution associated with the filament eruption located at the border of an active region (AR). The event SOL2013-03-16T14:00 was observed with a large difference in view point by the Solar Dynamics Observatory and Solar Terrestrial Relations Observatory. The filament height is fitted with the sum of a linear and exponential function. These two phases point to different physical mechanisms such as tether-cutting reconnection and a magnetic instability. While no X-ray emission is reported, this event presents classical eruption features like separation of double ribbons and the growth of flare loops. We report the migration of the southern foot of the erupting filament flux rope due to the interchange reconnection with encountered magnetic loops of a neighboring AR. Parallel to the erupting filament, a stable filament remains in the core of the AR. The specificity of this eruption is that coronal loops, located above the nearly joining ends of the two filaments, first contract in phase, then expand and reach a new stable configuration close to the one present at the eruption onset. Both contraction and expansion phases last around 20 minutes. The main difference with previous cases is that the PIL bent about 180° around the end of the erupting filament because the magnetic configuration is at least tripolar. These observations are challenging for models that interpreted previous cases of loop contraction within a bipolar configuration. New simulations are required to broaden the complexity of the configurations studied.

Comparative and phylogenetic analyses of eleven complete chloroplast genomes of Dipterocarpoideae

Background In South-east Asia, Dipterocarpoideae is predominant in most mature forest communities, comprising around 20% of all trees. As large quantity and high quality wood are produced in many species, Dipterocarpoideae plants are the most important and valuable source in the timber market. The d-borneol is one of the essential oil components from Dipterocarpoideae (for example, Dryobalanops aromatica or Dipterocarpus turbinatus) and it is also an important traditional Chinese medicine (TCM) formulation known as “Bingpian” in Chinese, with antibacterial, analgesic and anti-inflammatory effects and can enhance anticancer efficiency. Methods In this study, we analyzed 20 chloroplast (cp) genomes characteristics of Dipterocarpoideae, including eleven newly reported genomes and nine cp genomes previously published elsewhere, then we explored the chloroplast genomic features, inverted repeats contraction and expansion, codon usage, amino acid frequency, the repeat sequences and selective pressure analyses. At last, we constructed phylogenetic relationships of Dipterocarpoideae and found the potential barcoding loci. Results The cp genome of this subfamily has a typical quadripartite structure and maintains a high degree of consistency among species. There were slightly more tandem repeats in cp genomes of Dipterocarpus and Vatica, and the psbH gene was subjected to positive selection in the common ancestor of all the 20 species of Dipterocarpoideae compared with three outgroups. Phylogenetic tree showed that genus Shorea was not a monophyletic group, some Shorea species and genus Parashorea are placed in one clade. In addition, the rpoC2 gene can be used as a potential marker to achieve accurate and rapid species identification in subfamily Dipterocarpoideae. Conclusions Dipterocarpoideae had similar cp genomic features and psbM, rbcL, psbH may function in the growth of Dipterocarpoideae. Phylogenetic analysis suggested new taxon treatment is needed for this subfamily indentification. In addition, rpoC2 is potential to be a barcoding gene to TCM distinguish.

Spatial and temporal anoxia in single-osculum Halichondria panicea demosponge explants studied with planar optodes

The water flow through sponges is regulated by their contractile behaviour including contraction and expansion of the aquiferous system, which leads to shifting oxygen levels in the sponge interior. Still, knowledge of spatial and temporal anoxia in sponges is lacking, but important in elucidating interactions between sponge hosts and their microbiomes. We combined 2-D luminescence lifetime imaging of oxygen with simultaneous time-lapse recordings of the sponge exhalant opening (osculum) to unveil temporal as well as spatial oxygen dynamics caused by contractile behaviour in single-osculum explants of the demosponge Halichondria panicea. The present study reveals an intrinsic concentric deoxygenation pattern in explants during episodes of osculum contraction generating an oxygen gradient with increasing concentrations towards the explant periphery. Four sponge explants faced 25 episodes with substantial changes in internal oxygen and anoxia which prevailed for 4.4 h of the total 92.0 h observation period. The 2-D images revealed that the total area of the explant experiencing anoxia during periods of osculum contraction–expansion varied between 0.01 and 13.22% and was on average 7.4 ± 4.4% for all sponge explants. Furthermore, oxygen respiration, as approximated by the rate of change of oxygen concentration during deoxygenation of the explant interior, was similar throughout the oxic parts of the explant base. The resolved 2-D dynamics provide an unprecedented insight into the internal O2 distribution of sponges and complement the traditional point measurements of oxygen sensors.

Chloroplast Genome Sequencing, Comparative Analysis, and Discovery of Unique Cytoplasmic Variants in Pomegranate (Punica granatum L.)

Here we report on comprehensive chloroplast (cp) genome analysis of 16 pomegranate (Punica granatum L.) genotypes representing commercial cultivars, ornamental and wild types, through large-scale sequencing and assembling using next-generation sequencing (NGS) technology. Comparative genome analysis revealed that the size of cp genomes varied from 158,593 bp (in wild, “1201” and “1181”) to 158,662 bp (cultivar, “Gul-e-Shah Red”) among the genotypes, with characteristic quadripartite structures separated by a pair of inverted repeats (IRs). The higher conservation for the total number of coding and non-coding genes (rRNA and tRNA) and their sizes, and IRs (IR-A and IR-B) were observed across all the cp genomes. Interestingly, high variations were observed in sizes of large single copy (LSC, 88,976 to 89,044 bp) and small single copy (SSC, 18,682 to 18,684 bp) regions. Although, the structural organization of newly assembled cp genomes were comparable to that of previously reported cp genomes of pomegranate (“Helow,” “Tunisia,” and “Bhagawa”), the striking differences were observed with the Lagerstroemia lines, viz., Lagerstroemia intermedia (NC_0346620) and Lagerstroemia speciosa (NC_031414), which clearly confirmed previous findings. Furthermore, phylogenetic analysis also revealed that members outside the genus Punica were clubbed into a separate clade. The contraction and expansion analysis revealed that the structural variations in IRs, LSC, and SSC have significantly accounted for the evolution of cp genomes of Punica and L. intermedia over the periods. Microsatellite survey across cp genomes resulted in the identification of a total of 233 to 234 SSRs, with majority of them being mono- (A/T or C/G, 164–165 numbers), followed by di- (AT/AT or AG/CT, 54), tri- (6), tetra- (8), and pentanucleotides (1). Furthermore, the comparative structural variant analyses across cp genomes resulted in the identification of many varietal specific SNP/indel markers. In summary, our study has offered a successful development of large-scale cp genomics resources to leverage future genetic, taxonomical, and phylogenetic studies in pomegranate.

The genome of Nautilus pompilius illuminates eye evolution and biomineralization

Nautilus is the sole surviving externally shelled cephalopod from the Palaeozoic. It is unique within cephalopod genealogy and critical to understanding the evolutionary novelties of cephalopods. Here, we present a complete Nautilus pompilius genome as a fundamental genomic reference on cephalopod innovations, such as the pinhole eye and biomineralization. Nautilus shows a compact, minimalist genome with few encoding genes and slow evolutionary rates in both non-coding and coding regions among known cephalopods. Importantly, multiple genomic innovations including gene losses, independent contraction and expansion of specific gene families and their associated regulatory networks likely moulded the evolution of the nautilus pinhole eye. The conserved molluscan biomineralization toolkit and lineage-specific repetitive low-complexity domains are essential to the construction of the nautilus shell. The nautilus genome constitutes a valuable resource for reconstructing the evolutionary scenarios and genomic innovations that shape the extant cephalopods.