The Sustainability of Bison Production in North America: A Scoping Review

The American bison (Bison bison) is iconic of the Great Plains of North America, yet the genus has had to overcome near extinction in the recent past prior to being re-established for food production. This scoping review summarizes the literature on the Plains Bison as a large ruminant species adequate for modern-day meat production in order to evaluate the species’ appropriateness as a sustainable meat source and to identify knowledge gaps hindering the sustainability evaluation of bison production. To date, we can anecdotally assume that bison husbandry could contribute to sustainability based on its positive contribution to biodiversity, physiological robustness, economically higher price per kg, and nutritive values, despite their decreased growth and performance rates compared to beef cattle. However, targeted and system-based research is required in order to unequivocally assess the sustainability of bison production in North America.

Stearoyl-CoA Desaturase Activity and Gene Expression in the Adipose Tissue of Buffalo Bulls Was Unaffected by Diets with Different Fat Content and Fatty Acid Profile

Research on diet effects on buffalo meat quality may be critical to assess its possible consumption benefits in human nutrition. This study investigated, in growing buffalo bulls, the effects of two diets differing in total fat content and fatty acid profile on the activity and gene expression of Stearoyl-CoA Desaturase (SCD) in the adipose tissue and on meat quality. Twenty buffalo bulls, 6 months old, were randomly assigned to the two dietary treatments until slaughtering (about 400 kg body weight). No significant difference between the groups was observed for chemical composition, fatty acid profile and CLAs content of Longissimus thoracis as well as for the SCD gene expression. Such results seem to be in contrast with similar studies performed on other ruminant species, but confirm that important differences occur between buffalo and bovine species, such as the lower content in fat of buffalo meat. Our results also confirm that specific studies should be performed on buffalo, also in terms of the metabolic pathways activated by different diets.

Trichuriasis in Selected Deer (Cervidae) Species: A Geographical Perspective

Trichuris spp. are endoparasites found in a wide range of mammalian species. Some of these host species include humans, non-human primates, dogs, cats, pigs, wild ruminants and domesticated ruminants. However, it had been noted that Trichuris are host specific, therefore the parasites that infects wild ruminant species may be transmitted to domesticated animals such as cattle, sheep and goat. Thus, the aim of this review was to identify species of Trichuris that parasitise deer species and to categorise the prevalence of this disease at various geographical locations. It must be noted that the prevalence and intensity of this parasite within deer species was low and rarely showed any signs of clinical disease. However, deer can be a source of infection to domesticated ruminants that may be housed in closed proximity. The review is divided into several sections based on the geographical location of the deer species. In summary, the review shows that most of the identification of various species of Trichuris in deer is based on morphological techniques. However, the use of molecular techniques in the identification of various species of Trichuris is more accurate. In closing, there is a need for more molecular investigations to be done in identifying the species of Trichuris that are present in deer living in the neo-tropical region.

Ongoing Assessment of the Molecular Evolution of Peste Des Petits Ruminants Virus Continues to Question Viral Origins

Understanding the evolution of viral pathogens is critical to being able to define how viruses emerge within different landscapes. Host susceptibility, which is spread between different species and is a contributing factor to the subsequent epidemiology of a disease, is defined by virus detection and subsequent characterization. Peste des petits ruminants virus is a plague of small ruminant species that is a considerable burden to the development of sustainable agriculture across Africa and much of Asia. The virus has also had a significant impact on populations of endangered species in recent years, highlighting its significance as a pathogen of high concern across different regions of the globe. Here, we have re-evaluated the molecular evolution of this virus using novel genetic data to try and further resolve the molecular epidemiology of this disease. Viral isolates are genetically characterized into four lineages (I−IV), and the historic origin of these lineages is of considerable interest to the molecular evolution of the virus. Our re-evaluation of viral emergence using novel genome sequences has demonstrated that lineages I, II and IV likely originated in West Africa, in Senegal (I) and Nigeria (II and IV). Lineage III sequences predicted emergence in either East Africa (Ethiopia) or in the Arabian Peninsula (Oman and/or the United Arab Emirates), with a paucity of data precluding a more refined interpretation. Continual refinements of evolutionary emergence, following the generation of new data, is key to both understanding viral evolution from a historic perspective and informing on the ongoing genetic emergence of this virus.

Occurrence of malformed calves in April - May 2021 indicates an unnoticed 2020 emergence of Schmallenberg virus in Denmark

During the European emergence of Schmallenberg virus (SBV) in 2011, examination of Culicoides spp. showed that SBV infected midges were present across Denmark. However, SBV associated malformations in ruminant species have not been reported in Denmark. In April 2021, seven calves with severe congenital generalized arthrogryposis and reduced body weight originating from a narrow region of the Jutlandic peninsula were submitted for examination. Analysis of fetal brain tissue for SBV viral RNA and pleural effusion for fetal anti-SBV antibodies identified SBV as the cause of the congenital syndrome. Backwards calculation from the calving dates indicated the occurrence of an unnoticed emergence of SBV in Denmark from early August 2020 and during the late summer and autumn. As SBV associated malformations may lead to dystocia urging for fetotomy or Cesarean section, veterinarians performing obstetric intervention are first line personnel in recognition of SBV emergence in domestic ruminants.

Infection and transmission of SARS-CoV-2 and its alpha variant in pregnant white-tailed deer

SARS-CoV-2, a novel Betacoronavirus, was first reported circulating in human populations in December 2019 and has since become a global pandemic. Recent history involving SARS-like coronavirus outbreaks (SARS-CoV and MERS-CoV) have demonstrated the significant role of intermediate and reservoir hosts in viral maintenance and transmission cycles. Evidence of SARS-CoV-2 natural infection and experimental infections of a wide variety of animal species has been demonstrated, and in silico and in vitro studies have indicated that deer are susceptible to SARS-CoV-2 infection. White-tailed deer (Odocoileus virginianus) are amongst the most abundant, densely populated, and geographically widespread wild ruminant species in the United States. Human interaction with white-tailed deer has resulted in the occurrence of disease in human populations in the past. Recently, white-tailed deer fawns were shown to be susceptible to SARS-CoV-2. In the present study, we investigated the susceptibility and transmission of SARS-CoV-2 in adult white-tailed deer. In addition, we examined the competition of two SARS-CoV-2 isolates, representatives of the ancestral lineage A (SARS-CoV-2/human/USA/WA1/2020) and the alpha variant of concern (VOC) B.1.1.7 (SARS-CoV-2/human/USA/CA_CDC_5574/2020), through co-infection of white-tailed deer. Next-generation sequencing was used to determine the presence and transmission of each strain in the co-infected and contact sentinel animals. Our results demonstrate that adult white-tailed deer are highly susceptible to SARS-CoV-2 infection and can transmit the virus through direct contact as well as vertically from doe to fetus. Additionally, we determined that the alpha VOC B.1.1.7 isolate of SARS-CoV-2 outcompetes the ancestral lineage A isolate in white-tailed deer, as demonstrated by the genome of the virus shed from nasal and oral cavities from principal infected and contact animals, and from virus present in tissues of principal infected deer, fetuses and contact animals.

De Novo Transcriptome Assembly, Functional Annotation and SSR Marker Discovery of Qinling Takin (Budorcas taxicolor bedfordi)

The takin (Budorcas taxicolor) is an endemic ruminant species belonging to the bovine family. The International Union for Conservation of Nature (IUCN) has listed it as an endangered and vulnerable species. However, little is known about its molecular characterization since it lacks a reference genome. This study used RNA sequencing followed by de novo assembly, annotation and simple sequence repeats (SSRs) prediction to assess the transcriptome of Qinling takin (Budorcas taxicolor bedfordi) muscles. In total, 21,648 unigenes with an N50 and mean length of 1388 bp and 817 bp, respectively, were successfully detected and annotated against the public databases (NR, GO, KEGG, and EggNOG). Furthermore, 6222 SSRs were identified using the MIcroSAtellite (MISA) identification tool software. Taken together, these findings will provide valuable information for genetic, genomic, and evolutionary studies on takin.

Metagenomic analysis reveals rumen microbiota alteration of the yak at different stages of growth

The Yak (Bos grunniens) is a unique ruminant species that is crucially important to agriculture in the Tibetan plateau. Variation of microorganism communities in the yak rumen is of great interest because of possible links to environmentally and economically important traits. In this study, we performed histological and microbial analyses of the yak rumen at 5 stages of growth: 1 day, 20 days, 60 days, 15 months, and 5 years of age. Tissue slices and metagenomics sequencing were used. The rumen index increased gradually from 1 day to 5 years of age. These were significant differences in rumen index between the 60d, 15m, and 5y group (p < 0.05). Compared with other time points, the thickness of muscularis along with length and width of rumen papillae at 60 d,15 m, and 5 years of age increased and differed (p < 0.05), respectively. At the phylum level, Bacteroidetes and Firmicutes were the phyla with the highest abundance in all the age groups. A total of 115,401 genes were annotated on the CAZy database. Glycoside Hydrolase (GH) had the highest relative abundance, followed by Glycosyl Transferase (GT), and Carbohydrate-binding Modules (CBM). There were significant variations for the microbial species and CAZys within the five groups. Taken together, the morphology and microbiota in the yak rumen changed at various stages of growth and likely played a significant role in the absorption of nutrients. This study provides new insights into the function of yak rumen microbiota and physiologic adaptations in plateau animals.

Brucellosis in Iranian buffalo: prevalence and diagnostic methods

The water buffalo (Bubalus bubalis) in Iran represent an important source of meat and milk products with high biological value. Given the importance of water buffalo in Iran and the prevalence of brucellosis as one of the most important zoonotic diseases in this ruminant species, this study summarized available data on history, epidemiology, diagnosis, and control of brucellosis in water buffalo from previous studies that have been carried out in Iran. According to the documented data, there are three main groups of Iranian buffalo, including the Khuzestan ecotype (Khuzestan province); the Azary ecotype (Western/ Eastern Azarbaijan and Ardabil provinces); and the North ecotype (Gylan and Mazandaran provinces). Preliminary studies conducted on Iranian buffaloes either by serological or molecular tools reported that buffaloes' infection occurred due to natural exposure to a wild strain of Brucella abortus and Brucella melitensis. Previous studies dealing with brucellosis in Iranian buffalo are next to none. This review notifies the importance of reliable and detailed epidemiological investigations of Iranian buffaloes through continuous monitoring systems of the health status of buffalo populations. Continuous test and slaughter strategy, vaccination, and re-planning of veterinary activities are required to mitigate buffalo's role in disseminating and maintaining brucellosis in Iran.