No pervasive relationship between species size and local abundance trends

Although there is some evidence that larger species could be more prone to population declines, the potential role of size traits in determining changes in community composition has been underexplored in global-scale analyses. Here, we combine a large cross-taxon assemblage time series database (BioTIME) with multiple trait databases to show that there is no clear correlation within communities between size traits and changes in abundance over time, suggesting that there is no consistent tendency for larger species to be doing proportionally better or worse than smaller species at local scales.

Long-term changes in populations of rainforest birds in the Australia Wet Tropics bioregion: A climate-driven biodiversity emergency

Many authors have suggested that the vulnerability of montane biodiversity to climate change worldwide is significantly higher than in most other ecosystems. Despite the extensive variety of studies predicting severe impacts of climate change globally, few studies have empirically validated the predicted changes in distribution and population density. Here, we used 17 years (2000–2016) of standardised bird monitoring across latitudinal/elevational gradients in the rainforest of the Australian Wet Tropics World Heritage Area to assess changes in local abundance and elevational distribution. We used relative abundance in 1977 surveys across 114 sites ranging from 0-1500m above sea level and utilised a trend analysis approach (TRIM) to investigate elevational shifts in abundance of 42 species. The local abundance of most mid and high elevation species has declined at the lower edges of their distribution by >40% while lowland species increased by up to 190% into higher elevation areas. Upland-specialised species and regional endemics have undergone dramatic population declines of almost 50%. The “Outstanding Universal Value” of the Australian Wet Tropics World Heritage Area, one of the most irreplaceable biodiversity hotspots on Earth, is rapidly degrading. These observed impacts are likely to be similar in many tropical montane ecosystems globally.

Gamma diversity and under-sampling together generate patterns in beta-diversity

Beta diversity represents how species in the regional pool segregate among local communities and hence forms a link between local and regional species diversities. Therefore, the magnitude of beta diversity and its variation across geographic gradients can provide insights into mechanisms of community assembly. Along with limits on local or regional level diversities, effects of local abundance that lead to under-sampling of the regional species pool are important determinants of estimated beta diversity. We explore the effects of regional species pools, abundance distributions, and local abundance to show that patterns in beta diversity as well as the mean of species abundance distribution have distinct outcomes, depending on limits on species pools and under-sampling. We highlight the effect of under-sampling in some established relationships between gamma diversity and beta diversity using graphical methods. We then use empirical data on ant communities across an elevational gradient in the Eastern Himalayas to demonstrate a shift from effect of reduction in species pool to under-sampling at mid-elevations. Our results show that multiple processes with contrasting effects simultaneously affect patterns in beta diversity across geographic gradients.

Phylogenetic dependence of plant-soil feedback promotes rare species in a subtropical forest

The widespread observation that rare species have stronger conspecific plant-soil feedback (PSF) than common species raises more questions than answers on how rare species can possibly win the dance with abundant species. Here, we test soil feedback effect of phylogenetically related species on seedlings of contrasting local abundance in a subtropical forest. The results showed that although rare species suffered strong negative PSF in soils of conspecifics or phylogenetically close relatives, no such feedback was found in the soils of distant relatives. In contrast, although common species had weak conspecific PSF, they suffered consistently strong heterospecific soil feedback. These mechanisms ensure that rare species would fare well in the neighborhood of phylogenetically distant heterospecifics but do poorly under their close relatives, while common species perform relatively well in their own neighborhood but poorly in others’. This phylogenetic conservatism in PSF facilitates the persistence of rare species in a community.

Co-Density Distribution Maps for Advanced Molecule Colocalization and Co-Distribution Analysis

Cellular and subcellular spatial colocalization of structures and molecules in biological specimens is an important indicator of their co-compartmentalization and interaction. Presently, colocalization in biomedical images is addressed with visual inspection and quantified by co-occurrence and correlation coefficients. However, such measures alone cannot capture the complexity of the interactions, which does not limit itself to signal intensity. On top of the previously developed density distribution maps (DDMs), here, we present a method for advancing current colocalization analysis by introducing co-density distribution maps (cDDMs), which, uniquely, provide information about molecules absolute and relative position and local abundance. We exemplify the benefits of our method by developing cDDMs-integrated pipelines for the analysis of molecules pairs co-distribution in three different real-case image datasets. First, cDDMs are shown to be indicators of colocalization and degree, able to increase the reliability of correlation coefficients currently used to detect the presence of colocalization. In addition, they provide a simultaneously visual and quantitative support, which opens for new investigation paths and biomedical considerations. Finally, thanks to the coDDMaker software we developed, cDDMs become an enabling tool for the quasi real time monitoring of experiments and a potential improvement for a large number of biomedical studies.

Drone Surveys Revealed Bottom-Up, And Not Top-Down, Effects On The Marsh Deer Local Abundance

Context: Spatial variation in large herbivore populations can be highly affected by the availability of resources (bottom-up) but modulated by the presence of predators (top-down). Studying the relative influence of these forces has been a major topic of interest in ecological and conservation research, while it has also been challenging to sample large herbivores. Objective: i) Explore the use of spatiotemporally replicated drone-based counts analysed with N-mixture models to estimate abundance of large herbivores. ii) Evaluate the relative influence of bottom-up (forage and water) and top-down (jaguars) processes on the local abundance of the threatened marsh deer.Methods: We conducted spatiotemporally replicated drone flights in the dry season of Pantanal wetland (Brazil) and imagery was reviewed by either one or two observers. We fitted counts using N-mixture models (for single and double observer protocols) and modelled local abundance in relation to vegetation greenness, distance to water bodies, and jaguar density.Results: We found a positive relationship of marsh deer local abundance with vegetation greenness, a negative relationship with distance to water, but no relation with jaguar density. Individuals were concentrated in the lower and wetter region, even though it is the area expected to be more lethal from jaguar predation.Conclusions: Bottom-up processes are shaping the distribution of marsh deer in the dry season; the benefits of accessing high-quality areas outweigh predation risk from jaguars. Spatiotemporally replicated drone-based counts may serve as an accessible and cost-effective protocol for large herbivores abundance estimation and monitoring while accounting for imperfect detection.

Intraspecific Abundance–Occupancy–Patchiness Relations in the Intertidal Benthic Macrofauna of a Cool-Temperate North Sea Mudflat

The macroecological variable of patchiness (Lloyd’s Ip index of patchiness, P) has recently been shown to be related inter- and intraspecifically to those of abundance (numbers m−2, A), and occupancy (% occurrence in samples, O) in lower latitude seagrass macrofaunas. For the first time in higher latitudes, intraspecific relationships between three spatial variables were investigated in the intertidal mudflat macrobenthos of the Scolt Head barrier island, southern North Sea (53° N, 01° E). Sampling was conducted between early July and late September 2009–2013 using 710-µm mesh for sample processing. Strong positive interspecific A-O and negative interspecific P-O and P-A relationships were present. Two of the most numerous and widespread assemblage components, however, occurred with effectively constant occupancy (Peringia ulvae, 100%, and Tubificoides benedii, 93%) across the whole 20-ha locality and therefore could not show intraspecific relationships of occupancy with other macroecological metrics. These two apart, only one other dominant species failed to show a significant positive intraspecific A-O relationship; no species showed significant P-A relations of any form; and only two showed the negative P-O ones that have been described elsewhere. The intraspecific A-O patterns appear to contrast with those of an earlier study at another North Sea locality (the Dutch Wadden Sea), although differences are more apparent than real, but the Scolt Head fauna showed fewer intraspecific P-O and P-A relations than those characterising similar circumstances in the two lower-latitude localities previously investigated. Neither developmental mode nor variation in local abundance appears to influence these patterns. A-O-P relations therefore seem widespread but may be subject to latitudinal modification.

Conservation of Non-Pest Whiteflies and Natural Enemies of the Cabbage Whitefly Aleyrodes proletella on Perennial Plants for Use in Non-Crop Habitats

Aleyrodes proletella causes severe economic damage to several Brassica crops. Its naturally occurring enemies often immigrate late in the season or appear in low numbers on cabbage. This field study aims to permanently increase the local abundance of A. proletella’s natural enemies by providing the non-pest whitefly Aleyrodes lonicerae as an alternative and overwintering host/prey. Therefore, the population dynamics of natural enemies on different perennial herbaceous plants pre-infested with A. lonicerae were determined at two field locations over two winter periods. Most A. lonicerae colonized (on average 166.22 puparia per m²) and overwintered (342.19 adults per m²) on wood avens Geum urbanum. Furthermore, the abundance of A. proletella main parasitoid Encarsia tricolor (28.50 parasitized puparia per m²) and spiders (12.13 per m²) was 3–74 times and 3–14 times higher, respectively, on G. urbanum compared to the other experimental plants. Conclusively, G. urbanum pre-infested with A. lonicerae permanently promoted natural enemies of A. proletella by serving as shelter, reproduction, and overwintering habitat. A potential implementation of G. urbanum in conservation biological control strategies (e.g., tailored flower strips, hedgerows) against A. proletella are discussed and suggestions for future research are given.

Long-term changes in populations of rainforest birds in the Australia Wet Tropics bioregion: a climate-driven biodiversity emergency

Many authors have suggested that the vulnerability of montane biodiversity to climate change worldwide is significantly higher than in most other ecosystems. Despite the extensive variety of studies predicting severe impacts of climate change globally, few studies have empirically validated the predicted changes in distribution and population density . Here, we used 17 years of bird monitoring across latitudinal/elevational gradients in the rainforest of the Australian Wet Tropics World Heritage Area to assess changes in local abundance and distribution. We used relative abundance in 1977 surveys across 114 sites ranging from 0-1500m above sea level and utilised a trend analysis approach (TRIM) to investigate elevational shifts in abundance of 42 species between 2000 – 2016. The local abundance of most mid and high elevation species has declined at the lower edges of their distribution by >40% while lowland species increased by up to 190% into higher elevation areas. Upland-specialised species and regional endemics have undergone dramatic population declines of almost 50%. The “Outstanding Universal Value” of the Australian Wet Tropics World Heritage Area, one of the most irreplaceable biodiversity hotspots on Earth, is rapidly degrading. These observed impacts are likely to be similar in many tropical montane ecosystems globally.