Abstract
A novel Gram-stain negative, asporogenous, slimy, rod-shaped, non-motile bacterium was isolated from the root samples collected from rice field located in Ilsan, South Korea. Phylogenetic analysis of the 16S rRNA sequence of the bacterium revealed a close proximity to Tianweitania sediminis Z8T (96.5%) followed by genera Mesorhizobium (96.4-95.6%), Aquabacterium (95.9-95.7%), Rhizobium (95.8%) and Ochrobactrum (95.6%). Strain ROOL2T produced white slime on R2A agar plates and grew optimally at 30℃ in the presence of 1-6% (w/v) NaCl and at pH 7.5. The major respiratory quinone was ubiquinone-10 and the major cellular fatty acids were C18 :1ω7c, summed feature 4 (comprising iso-C17:1 I and/or anteiso-C17:1 B) and summed feature 8 (comprising C18:1ω6c and/or C18:1ω7c). The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylmethylethanolamine, phosphatidylglycerol, one unidentified aminolipid and two unidentified lipids. The assembled draft genome of strain ROOL2T had 28 contigs with N50 values of 656,326 nt, total length of 4,894,583 bp and a DNA G+C content of 61.5%. The average amino acid identity (AAI) values of strain ROOL2T against the genomes of related members belonging to the same family were below 68%, is below the suggested threshold for genera boundaries. The ANI and dDDH values between the strain ROOL2T and the type strains of phylogenetically related species were 61.8-76.3% and 19.4-21.1%, respectively. Strain ROOL2T only produced carotenoid-type pigment when grown on LB agar but doesn’t produced slime material, in opposite they produced slime materials on R2A and doesn’t produces carotenoid-type pigments. The slime layer protects its inhabitants from environmental dangers such as desiccation and antibiotics. Strain ROOL2T produced indole acetic acid (IAA) in the presence of tryptophan. Bacterial IAA is a crucial phytohormone in plant growth and development. Striking gene clusters for indole-3-glycerol phosphatase and tryptophan synthase were found in the genome of strain ROOL2T. The genotypic and phenotypic characteristics indicated that strain ROOL2T represents a novel genus belonging the family Phyllobacteriaceae, for which the name Oryzicola mucosus gen. nov., sp. nov. is proposed. The type strain is ROOL2T (KCTC 82711T = NBRC 114717T).