The impact of damage‐associated molecular patterns on the neurotransmitter release and gene expression in the ex vivo rat carotid body

2020 ◽  
Vol 105 (9) ◽  
pp. 1634-1647 ◽  
Author(s):  
Souren Mkrtchian ◽  
Jessica Kåhlin ◽  
Marta Gómez‐Galán ◽  
Anette Ebberyd ◽  
Takashi Yoshitake ◽  
...  
2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Federico Tinarelli ◽  
Elena Ivanova ◽  
Ilaria Colombi ◽  
Erica Barini ◽  
Edoardo Balzani ◽  
...  

Abstract Background DNA methylation has emerged as an important epigenetic regulator of brain processes, including circadian rhythms. However, how DNA methylation intervenes between environmental signals, such as light entrainment, and the transcriptional and translational molecular mechanisms of the cellular clock is currently unknown. Here, we studied the after-hours mice, which have a point mutation in the Fbxl3 gene and a lengthened circadian period. Methods In this study, we used a combination of in vivo, ex vivo and in vitro approaches. We measured retinal responses in Afh animals and we have run reduced representation bisulphite sequencing (RRBS), pyrosequencing and gene expression analysis in a variety of brain tissues ex vivo. In vitro, we used primary neuronal cultures combined to micro electrode array (MEA) technology and gene expression. Results We observed functional impairments in mutant neuronal networks, and a reduction in the retinal responses to light-dependent stimuli. We detected abnormalities in the expression of photoreceptive melanopsin (OPN4). Furthermore, we identified alterations in the DNA methylation pathways throughout the retinohypothalamic tract terminals and links between the transcription factor Rev-Erbα and Fbxl3. Conclusions The results of this study, primarily represent a contribution towards an understanding of electrophysiological and molecular phenotypic responses to external stimuli in the Afh model. Moreover, as DNA methylation has recently emerged as a new regulator of neuronal networks with important consequences for circadian behaviour, we discuss the impact of the Afh mutation on the epigenetic landscape of circadian biology.


PLoS ONE ◽  
2015 ◽  
Vol 10 (4) ◽  
pp. e0122904 ◽  
Author(s):  
Dominique de Seny ◽  
Gaël Cobraiville ◽  
Edith Charlier ◽  
Sophie Neuville ◽  
Laurence Lutteri ◽  
...  

Toxins ◽  
2019 ◽  
Vol 11 (11) ◽  
pp. 662 ◽  
Author(s):  
Amel Ben Lagha ◽  
Amy Howell ◽  
Daniel Grenier

Aggregatibacter actinomycetemcomitans is a Gram-negative bacterium that has been strongly associated with localized aggressive periodontitis. The capacity of A. actinomycetemcomitans to produce a leukotoxin (LtxA) that activates pyroptosis in macrophages and induces the release of endogenous danger signals is thought to play a key role in the disease process. The aim of the present study was to investigate the effects of cranberry proanthocyanidins (PACs) on gene expression and cytotoxic activities of LtxA. We showed that cranberry PACs dose-dependently attenuate the expression of genes making up the leukotoxin operon, including ltxB and ltxC, in the two strains of A. actinomycetemcomitans tested. Cranberry PACs (≥62.5 µg/mL) protected macrophages against the cytotoxic effect of purified LtxA. Moreover, cranberry PACs reduced caspase-1 activation in LtxA-treated macrophages and consequently decreased the release of both IL-1β and IL-18, which are known as damage-associated molecular patterns (DAMPs) and contribute to the progression of periodontitis by increasing cell migration and osteoclastogenesis. In addition, cranberry PACs reduced the expression of genes encoding the P2X7 receptor and NALP3 (NACHT, LRR and PYD domains-containing protein 3), which play key roles in pore formation and cell death. Lastly, cranberry PACs blocked the binding of LtxA to macrophages and consequently reduced the LtxA-mediated cytotoxicity. In summary, the present study showed that cranberry PACs reduced LtxA gene expression in A. actinomycetemcomitans and neutralized the cytolytic and pro-inflammatory responses of human macrophages treated with LtxA. Given these properties, cranberry PACs may represent promising molecules for prevention and treatment of the aggressive form of periodontitis caused by A. actinomycetemcomitans.


Blood ◽  
2006 ◽  
Vol 108 (12) ◽  
pp. 3801-3807 ◽  
Author(s):  
Angelina Jane Mosley ◽  
Kiran N. Meekings ◽  
Corinna McCarthy ◽  
Dawn Shepherd ◽  
Vincenzo Cerundolo ◽  
...  

AbstractThe dynamics of human T-lymphotropic virus type-1 (HTLV-1) provirus expression in vivo are unknown. There is much evidence to suggest that HTLV-1 gene expression is restricted: this restricted gene expression may contribute to HTLV-1 persistence by limiting the ability of the HTLV-1–specific CD8+ cell immune response to clear infected cells. In this study, we tested the hypothesis that derepression of HTLV-1 gene expression would allow an increase in CD8+ cell–mediated lysis of HTLV-1–infected cells. Using histone deacetylase enzyme inhibitors (HDIs) to hyperacetylate histones and increase HTLV-1 gene expression, we found that HDIs doubled Tax expression in naturally infected lymphocytes after overnight culture. However, the rate of CD8+ cell–mediated lysis of Tax-expressing cells ex vivo was halved. HDIs appeared to inhibit the CD8+ cell–mediated lytic process itself, indicating a role for the microtubule-associated HDAC6 enzyme. These observations indicate that HDIs may reduce the efficiency of cytotoxic T-cell (CTL) surveillance of HTLV-1 in vivo. The impact of HDIs on HTLV-1 proviral load in vivo cannot be accurately predicted because of the widespread effects of these drugs on cellular processes; we therefore recommend caution in the use of HDIs in nonmalignant cases of HTLV-1 infection.


2021 ◽  
Vol 22 (15) ◽  
pp. 7853
Author(s):  
Athanassios Fragoulis ◽  
Kristina Biller ◽  
Stephanie Fragoulis ◽  
Dennis Lex ◽  
Stefan Uhlig ◽  
...  

qRT-PCR still remains the most widely used method for quantifying gene expression levels, although newer technologies such as next generation sequencing are becoming increasingly popular. A critical, yet often underappreciated, problem when analysing qRT-PCR data is the selection of suitable reference genes. This problem is compounded in situations where up to 25% of all genes may change (e.g., due to leukocyte invasion), as is typically the case in ARDS. Here, we examined 11 widely used reference genes for their suitability in commonly used models of acute lung injury (ALI): ventilator-induced lung injury (VILI), in vivo and ex vivo, lipopolysaccharide plus mechanical ventilation (MV), and hydrochloric acid plus MV. The stability of reference gene expression was determined using the NormFinder, BestKeeper, and geNorm algorithms. We then proceeded with the geNorm results because this is the only algorithm that provides the number of reference genes required to achieve normalisation. We chose interleukin-6 (Il‑6) and C-X-C motif ligand 1 (Cxcl-1) as the genes of interest to analyse and demonstrate the impact of inappropriate normalisation. Reference gene stability differed between the ALI models and even within the subgroup of VILI models, no common reference gene index (RGI) could be determined. NormFinder, BestKeeper, and geNorm produced slightly different, but comparable results. Inappropriate normalisation of Il-6 and Cxcl1 gene expression resulted in significant misinterpretation in all four ALI settings. In conclusion, choosing an inappropriate normalisation strategy can introduce different kinds of bias such as gain or loss as well as under- or overestimation of effects, affecting the interpretation of gene expression data.


2021 ◽  
Vol 8 ◽  
Author(s):  
Katarzyna Skowron-Kandzia ◽  
Marcin Tomsia ◽  
Halina Koryciak-Komarska ◽  
Danuta Plewka ◽  
Patrycja Wieczorek ◽  
...  

Human amniotic cells (hAC) exhibit characteristics of undifferentiated cells and immunomodulatory properties. Recognition of the relationship between amniotic cells and components of the extracellular matrix is an important condition for their ex vivo preparation and further successful clinical application in regenerative medicine and transplantology. Laminin 332 (LN-332), as a natural component of the basement membrane of amniotic epithelial cells and a ligand for integrin receptors, may strongly influence the phenotype and fate of amniotic cells. We investigated the impact of recombinant LN-332 on hAC viability and expression of markers for pluripotency, early differentiation, adhesion, and immunomodulatory properties. During 14 days of culture, hAC were quantified and qualified by light microscopy, immunohistochemistry, immunocytochemistry, and flow cytometry. Gene expression was assessed with real-time polymerase chain reaction (RT-PCR) arrays and compared with differentiated cells originated from the three germ layers. LN-332 caused an over 2-fold increase in the total number of hAC, accompanied by a 75% reduction of SSEA-4-positive cells and an increase in HLA-ABC-positive cells. In particular, we observed that the presence of laminin 332 in the medium of a short-time culture modifies the effect of culture duration on hAC, enhancing time-dependent inhibition of expression of certain genes, including pluripotency and differentiation markers, laminin 332 subunits (which may be part of self-regulation of LN-332 synthesis by amniotic cells), and integrins. The changes observed in hAC were more distinct with respect to differentiated mesenchymal cells, resulting in more comparable phenotypes than those represented by differentiated endo- and ectodermal cells. We concluded that laminin 332 present in the culture medium influences to a certain extent proliferation, adhesion, and differentiation of amniotic cells in culture.


2022 ◽  
Vol 15 (1) ◽  
Author(s):  
No-Joon Song ◽  
Carter Allen ◽  
Anna E. Vilgelm ◽  
Brian P. Riesenberg ◽  
Kevin P. Weller ◽  
...  

Abstract Background Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) causes coronavirus disease 2019 (COVID-19) through direct lysis of infected lung epithelial cells, which releases damage-associated molecular patterns and induces a pro-inflammatory cytokine milieu causing systemic inflammation. Anti-viral and anti-inflammatory agents have shown limited therapeutic efficacy. Soluble CD24 (CD24Fc) blunts the broad inflammatory response induced by damage-associated molecular patterns via binding to extracellular high mobility group box 1 and heat shock proteins, as well as regulating the downstream Siglec10-Src homology 2 domain–containing phosphatase 1 pathway. A recent randomized phase III trial evaluating CD24Fc for patients with severe COVID-19 (SAC-COVID; NCT04317040) demonstrated encouraging clinical efficacy. Methods Using a systems analytical approach, we studied peripheral blood samples obtained from patients enrolled at a single institution in the SAC-COVID trial to discern the impact of CD24Fc treatment on immune homeostasis. We performed high dimensional spectral flow cytometry and measured the levels of a broad array of cytokines and chemokines to discern the impact of CD24Fc treatment on immune homeostasis in patients with COVID-19. Results Twenty-two patients were enrolled, and the clinical characteristics from the CD24Fc vs. placebo groups were matched. Using high-content spectral flow cytometry and network-level analysis, we found that patients with severe COVID-19 had systemic hyper-activation of multiple cellular compartments, including CD8+ T cells, CD4+ T cells, and CD56+ natural killer cells. Treatment with CD24Fc blunted this systemic inflammation, inducing a return to homeostasis in NK and T cells without compromising the anti-Spike protein antibody response. CD24Fc significantly attenuated the systemic cytokine response and diminished the cytokine coexpression and network connectivity linked with COVID-19 severity and pathogenesis. Conclusions Our data demonstrate that CD24Fc rapidly down-modulates systemic inflammation and restores immune homeostasis in SARS-CoV-2-infected individuals, supporting further development of CD24Fc as a novel therapeutic against severe COVID-19.


Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 1416-1416
Author(s):  
Katayoun Rezvani ◽  
Stephan Mielke ◽  
Yasemin Kilical ◽  
Bipin Savani ◽  
Keyvan Keyvanfar ◽  
...  

Abstract Data on the impact of regulatory T cells (Tregs) on GVHD following SCT in man is conflicting, possibly due to differences in techniques used to characterize them. We studied reconstitution of CD4+CD25+Foxp3+ T cells in the first 150 days following a T-depleted allogeneic SCT by surface phenotyping, Foxp3 gene expression and functional assays to characterize their post-transplant origin and pattern of recovery relating these findings to GVHD. Although there was a direct correlation between Foxp3 gene expression and CD4+CD25+ T cells in healthy donors the ratio between CD4+CD25+ T cell numbers and Foxp3 gene expression was more variable after SCT. In a longitudinal post-transplant study in 12 patients with leukemia, the Foxp3 copy number and CD4+CD25+ T cells were strongly correlated in 5. In 4 patients CD4+CD25+ and CD4+CD25+CD69+ T cells were disproportionately increased compared with Foxp3 gene expression, corresponding temporally with the development of acute GVHD and suggesting expansion of effector T cells. In 3 patients who did not develop clinically significant GVHD, the ratio of Foxp3 gene expression to CD25 fraction of CD4+ T cells was disproportionately high suggesting that Treg may have expanded or upregulated Foxp3 gene copy numbers. Treg reconstitution was slow in the first 45 days after SCT, lagging behind CD3 recovery but reaching normal levels by day 120. High day 30 Foxp3 gene expression inversely correlated with grade II–IV aGVHD (p = 0.02) and with severity of cGVHD. Chimerism analysis was performed on sorted CD4+CD25+ and CD4+CD25− T cell fractions from 7 patients on day120 samples. In most patients, the expanded Treg population was enriched in cells of donor origin. These results support strategies to prevent GVHD by increasing post-transplant Treg recovery by adoptive transfer of ex-vivo expanded Treg. Conversely, the absence of Treg together with lymphopenia-driven T cell expansion may offer a window of opportunity for boosting GVL effects by vaccination in the first few weeks after transplantation. Figure Figure


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 1128-1128
Author(s):  
Jean-Francois Boucher ◽  
Marie-Pierre Cayer ◽  
Lucie Boyer ◽  
Réal Lemieux ◽  
Chantal Proulx ◽  
...  

Abstract The future viability of ex vivo cell therapies will dependent largely on the optimization of culture processes leading to adequate cell production in a reasonable culture time. Toward this, we have previously reported that the megakaryocyte (MK) differentiation and the yield of MK and platelets produced ex vivo can be enhanced by culturing cord blood (CB) CD34+ cells at 39°C (Biotechnol Bioeng, 2004, 88). We are now working at better characterizing and identifying the mechanism(s) responsible for this phenomenon. First, we investigated whether this effect on cell expansion and differentiation was gradual, or whether it was rapidly induced. CB CD34+ cells were cultured in a media promoting MK differentiation at 39°C for various length of time before being placed at 37°C for a total of 14 days. Though it varied between samples, a minimum period of 4 days was required to observe most of the impacts, with the full qualitative and quantitative impacts obtained after an incubation of 7 days. Next, we analyzed the impact of the culture temperature on the cell cycle kinetics of CB cells. In short, cells grown at 39°C had a reduced mean doubling time during the first week of culture caused by a reduction in time spend in the G1 phase. This was evidenced by a, 1) decreased proportion of cells in G1 (P<0.05) and increased proportion in the S/G2/M phases (S/G2/M of 39.7±2.7% vs 37.3±1.9% (P=0.05)), 2) similar mitotic indexes (%G/M2, P=0.3), 3) comparable viability as determined by annexinV/PI staining (P=0.4) and, 4) increased BrdU incorporation in the first 5 days of culture (+6.9 ±0.7%, P<0.03 (n=2)). Next, we investigated whether transcription factors (TF) normally involved in MK differentiation could be implicated in the increased and accelerated MK differentiation observed at 39°C. The expression of 3 key MK TFs (NF-E2,GATA-1 and Fli-1) was assessed by quantitative PCR (Q-PCR) in cultures of CB CD34+ cells under conditions favoring MK differentiation, at 37 and 39°C. Although no major perturbations were detected, their maximal expression levels were reached faster at 39°C. These differences appear to be a consequence rather than the cause of the increased MK differentiation seen at 39°C, since these correlated with the earlier apparition of immature CD41+ MK and mature CD42+ MK in 39°C cultures. To identify other candidate genes, we used microarray analysis (Affymetrix, U133A 2.0) to compare the gene expression repertoire of CD41+-MK cultured at 39°C or 37°C for 7 days. Analysis of 2 experiments identified a total of 239 genes differentially expressed (116 upregulated). This gene list was corroborated by Q-PCR, which confirmed the changes in expression of 10 of 12 genes. Interestingly, PDGF-a, a cytokine reported to promote MK expansion, was among the genes whose expression was found increased at 39°C by 2.8-fold. Hence, we tested whether addition of PDGF to culture at 37°C could recapitulate the increased and/or accelerated MK differentiation kinetic seen at 39°C. However, PDGF failed to increase MK output at 37°C and had little impact on MK differentiation (n=3). In summary, our results link the increased CB cell expansion and accelerated differentiation kinetics observed at 39°C to a shortening of the G1 phase. Although culture of CB MK at 39°C leads to significant differences in gene expression profile, it had a minimal impact on key MK TFs. Present work is aimed at identifying the mechanism(s) responsible for the shorter time required for CB cells to progress or exit the G1 phase.


2020 ◽  
Vol 12 (1) ◽  
Author(s):  
Sylwia Wasiak ◽  
Kim E. Dzobo ◽  
Brooke D. Rakai ◽  
Yannick Kaiser ◽  
Miranda Versloot ◽  
...  

Abstract Background Patients with cardiovascular disease (CVD) and type 2 diabetes (DM2) have a high residual risk for experiencing a major adverse cardiac event. Dysregulation of epigenetic mechanisms of gene transcription in innate immune cells contributes to CVD development but is currently not targeted by therapies. Apabetalone (RVX-208) is a small molecule inhibitor of bromodomain and extra-terminal (BET) proteins—histone acetylation readers that drive pro-inflammatory and pro-atherosclerotic gene transcription. Here, we assess the impact of apabetalone on ex vivo inflammatory responses of monocytes from DM2 + CVD patients. Results Monocytes isolated from DM2 + CVD patients and matched controls were treated ex vivo with apabetalone, interferon γ (IFNγ), IFNγ + apabetalone or vehicle and phenotyped for gene expression and protein secretion. Unstimulated DM2 + CVD monocytes had higher baseline IL-1α, IL-1β and IL-8 cytokine gene expression and Toll-like receptor (TLR) 2 surface abundance than control monocytes, indicating pro-inflammatory activation. Further, DM2 + CVD monocytes were hyper-responsive to stimulation with IFNγ, upregulating genes within cytokine and NF-κB pathways > 30% more than control monocytes (p < 0.05). Ex vivo apabetalone treatment countered cytokine secretion by DM2 + CVD monocytes at baseline (GROα and IL-8) and during IFNγ stimulation (IL-1β and TNFα). Apabetalone abolished pro-inflammatory hyper-activation by reducing TLR and cytokine gene signatures more robustly in DM2 + CVD versus control monocytes. Conclusions Monocytes isolated from DM2 + CVD patients receiving standard of care therapies are in a hyper-inflammatory state and hyperactive upon IFNγ stimulation. Apabetalone treatment diminishes this pro-inflammatory phenotype, providing mechanistic insight into how BET protein inhibition may reduce CVD risk in DM2 patients.


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