Influence of carbon source on arylsulfatase derepression in Pseudomonas C12B

Compared with growth on citrate, growth of Pseudomonas C12B with acetate as a carbon source resulted in approximately a four- to six-fold reduction in arylsulfatase activity irrespective of the sulfur source utilized to derepress arylsulfatase formation. Similarly, when O-acetyl-L-serine, oxaloacetate, malate, or α-ketoglutarate served as carbon sources in place of acetate, a reduction in arylsulfatase levels also occurred to varying degrees Trivial explanations for these results have been ruled out but efforts to provide an explanation for the inhibitory effect of acetate were unsuccessful. Some evidence suggests that growth on acetate may generate the formation of a substance which inactivates or irreversibly inhibits the enzyme.

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Isolation and characterization of a heterotrophic nitrifier from coke plant wastewater

Water Science & Technology ◽

10.2166/wst.2012.120 ◽

2012 ◽

Vol 65 (11) ◽

pp. 2084-2090 ◽

Cited By ~ 11

Author(s):

YuXiang Liu ◽

YaQing Li ◽

YongKang Lv

Keyword(s):

Wastewater Treatment ◽

Carbon Source ◽

Coke Plant ◽

Carbon Sources ◽

Treatment Plant ◽

Inhibitory Effect ◽

Nitrite Accumulation ◽

Meat Extract ◽

Ammonium Removal ◽

Isolation And Characterization

This study investigated some factors affecting ammonium removal and nitrite accumulation by Alcaligenes faecalis C16, which was isolated from the activated sludge of a coking wastewater treatment plant. Nitrite was produced from ammonium only in the presence of citrate, acetate, meat extract, peptone or ethanol. The highest amount of nitrite was found with citrate as carbon source. A. faecalis C16 could not use glucose, fructose, sucrose and methanol. Under the optimum conditions of initial pH 6.0, C/N 14, 30 °C and 120 rpm, a maximum nitrite accumulation of 28.29 mg/L NO2−-N was achieved when the organism grew with citrate in four days. Nitrite accumulation increased with the increase of NH4+-N. Furthermore, A. faecalis C16 was shown to have phenol-degrading capacity during ammonium removal. Metabolism of phenol resulted in acidification of the media, which is not favorable for nitrification, whereas many other carbon sources made the medium more alkaline. However, no inhibitory effect by phenol was observed when phenol and acetate were used as mixed carbon source at different phenol/sodium acetate (P/S) ratios and their pH values were all controlled above 9.2 or P/S ratios below 5:5. These results suggested that A. faecalis C16 has some potential application in industrial wastewater treatment systems.

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Generation and Phenotypic Characterization of Aspergillus nidulans Methylisocitrate Lyase Deletion Mutants: Methylisocitrate Inhibits Growth and Conidiation

Applied and Environmental Microbiology ◽

10.1128/aem.71.9.5465-5475.2005 ◽

2005 ◽

Vol 71 (9) ◽

pp. 5465-5475 ◽

Cited By ~ 32

Author(s):

Matthias Brock

Keyword(s):

Carbon Source ◽

Aspergillus Nidulans ◽

Isocitrate Dehydrogenase ◽

Genomic Sequence ◽

Competitive Inhibition ◽

Carbon Sources ◽

Inhibitory Effect ◽

Phenotypic Characterization ◽

Deletion Mutants ◽

Main Carbon Source

ABSTRACT Propionate is a very abundant carbon source in soil, and many microorganisms are able to use this as the sole carbon source. Nevertheless, propionate not only serves as a carbon source for filamentous fungi but also acts as a preservative when added to glucose containing media. To solve this contradiction between carbon source and preservative effect, propionate metabolism of Aspergillus nidulans was studied and revealed the methylcitrate cycle as the responsible pathway. Methylisocitrate lyase is one of the key enzymes of that cycle. It catalyzes the cleavage of methylisocitrate into succinate and pyruvate and completes the α-oxidation of propionate. Previously, methylisocitrate lyase was shown to be highly specific for the substrate (2R,3S)-2-methylisocitrate. Here, the identification of the genomic sequence of the corresponding gene and the generation of deletion mutants is reported. Deletion mutants did not grow on propionate as sole carbon and energy source and were severely inhibited during growth on alternative carbon sources, when propionate was present. The strongest inhibitory effect was observed, when glycerol was the main carbon source, followed by glucose and acetate. In addition, asexual conidiation was strongly impaired in the presence of propionate. These effects might be caused by competitive inhibition of the NADP-dependent isocitrate dehydrogenase, because the Ki of (2R,3S)-2-methylisocitrate, the product of the methylcitrate cycle, on NADP-dependent isocitrate dehydrogenase was determined as 1.55 μM. Other isomers had no effect on enzymatic activity. Therefore, methylisocitrate was identified as a potential toxic compound for cellular metabolism.

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Effect of carbon source on Phenobarbital metabolism by Rhizopus stolonifer

International Journal of Pharmaceutical Sciences and Nanotechnology ◽

10.37285/ijpsn.2010.3.2.17 ◽

2010 ◽

Vol 3 (2) ◽

pp. 1022-1027

Author(s):

Kavitha K ◽

Asha S ◽

Hima Bindu T.V.L ◽

Vidyavathi M

Keyword(s):

Carbon Source ◽

High Performance ◽

Carbon Sources ◽

In Vitro Models ◽

Rhizopus Stolonifer ◽

Safety And Efficacy ◽

Alternative Systems ◽

Toxicological Studies ◽

Microbial Model

The safety and efficacy of a drug is based on its metabolism or metabolite formed. The metabolism of drugs can be studied by different in vitro models, among which microbial model became popular. In the present study, eight microbes were screened for their ability to metabolize phenobarbital in a manner comparable to humans with a model to develop alternative systems to study human drug metabolism. Among the different microbes screened, a filamentous fungi Rhizopus stolonifer metabolized phenobarbital to its metabolite which is used for further pharmacological and toxicological studies. The transformation of phenobarbital was identified by high- performance liquid chromatography (HPLC). Interestingly, Rhizopus stolonifer sample showed an extra metabolite peak at 3.11min. compared to its controls. The influence of different carbon sources in media used for growth of fungus, on metabolite production was studied, to find its effect in production of metabolite as the carbon source may influence the growth of the cell.

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Inhibition of Yeast Growth by Tryptamine and Recovery with Tryptophan

Current Bioactive Compounds ◽

10.2174/1573407214666180713094152 ◽

2020 ◽

Vol 16 (1) ◽

pp. 48-52 ◽

Cited By ~ 1

Author(s):

Chandrika Kadkol ◽

Ian Macreadie

Keyword(s):

Saccharomyces Cerevisiae ◽

Carbon Source ◽

Competitive Inhibition ◽

Yeast Species ◽

Inhibitory Effect ◽

The Body ◽

Inhibitory Effects ◽

Trna Synthetases ◽

Fermentative Growth ◽

Biogenic Monoamine

Background: Tryptamine, a biogenic monoamine that is present in trace levels in the mammalian central nervous system, has probable roles as a neurotransmitter and/or a neuromodulator and may be associated with various neuropsychiatric disorders. One of the ways tryptamine may affect the body is by the competitive inhibition of the attachment of tryptophan to tryptophanyl tRNA synthetases. Methods: This study has explored the effects of tryptamine on growth of six yeast species (Saccharomyces cerevisiae, Candida glabrata, C. krusei, C. dubliniensis, C. tropicalis and C. lusitaniae) in media with glucose or ethanol as the carbon source, as well as recovery of growth inhibition by the addition of tryptophan. Results: Tryptamine was found to have an inhibitory effect on respiratory growth of all yeast species when grown with ethanol as the carbon source. Tryptamine also inhibited fermentative growth of Saccharomyces cerevisiae, C. krusei and C. tropicalis with glucose as the carbon source. In most cases the inhibitory effects were reduced by added tryptophan. Conclusion: The results obtained in this study are consistent with tryptamine competing with tryptophan to bind mitochondrial and cytoplasmic tryptophanyl tRNA synthetases in yeast: effects on mitochondrial and cytoplasmic protein synthesis can be studied as a function of growth with glucose or ethanol as a carbon source. Of the yeast species tested, there is variation in the sensitivity to tryptamine and the rescue by tryptophan. The current study suggests appropriate yeast strains and approaches for further studies.

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Denitrification Control in a Recirculating Aquaculture System—A Simulation Study

Processes ◽

10.3390/pr8101306 ◽

2020 ◽

Vol 8 (10) ◽

pp. 1306

Author(s):

Pedro Almeida ◽

Laurent Dewasme ◽

Alain Vande Wouwer

Keyword(s):

Carbon Source ◽

Carbon Sources ◽

Aquatic Organisms ◽

Operating Conditions ◽

Toxic Substances ◽

Recirculating Aquaculture System ◽

Treatment Technology ◽

Tuning Method ◽

Recirculating Aquaculture ◽

Aquaculture System

The recirculating aquaculture system (RAS) is a land-based water treatment technology, which allows for farming aquatic organisms, such as fish, by reusing the water in the production (often less than 5%). This technology is based on the use of filters, either mechanical or biological, and can, in principle, be used for any species grown in aquaculture. Due to the low recirculation rate, ammonia accumulates in the system and must be converted into nitrate using nitrification reactors. Although less toxic for fish, nitrate can also be further reduced into nitrogen gas by the use of denitrification biofilters which may create several issues, such as incomplete denitrification, resulting in toxic substances, such as nitrite and nitric oxide, or a waste of carbon source in excess. Control of the added quantity of carbon source in the denitrification biofilter is then mandatory to keep nitrate/nitrite concentrations under toxic levels for fish and in accordance with local effluent regulations, and to reduce costs related to wasted organic carbon sources. This study therefore investigates the application of different control methodologies to a denitrification reactor in a RAS. To this end, a numerical simulator is built to predict the RAS behavior and to allow for the comparison of different control approaches, in the presence of changes in the operating conditions, such as fish density and biofilter removal efficiency. First, a classical proportional-integral-derivative (PID) controller was designed, based on an SIMC tuning method depending on the amount of ammonia excreted by fish. Then, linearizing and cascade controllers were considered as possible alternatives.

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Myricetin as an Antivirulence Compound Interfering with a Morphological Transformation into Coccoid Forms and Potentiating Activity of Antibiotics against Helicobacter pylori

International Journal of Molecular Sciences ◽

10.3390/ijms22052695 ◽

2021 ◽

Vol 22 (5) ◽

pp. 2695

Author(s):

Paweł Krzyżek ◽

Paweł Migdał ◽

Emil Paluch ◽

Magdalena Karwańska ◽

Alina Wieliczko ◽

...

Keyword(s):

Helicobacter Pylori ◽

Biofilm Formation ◽

Inhibitory Effect ◽

Morphological Transformation ◽

High Tendency ◽

Minimal Inhibitory Concentrations ◽

Coccoid Form ◽

Stomach Diseases ◽

Fold Reduction ◽

H Pylori

Helicobacter pylori, a gastric pathogen associated with a broad range of stomach diseases, has a high tendency to become resistant to antibiotics. One of the most important factors related to therapeutic failures is its ability to change from a spiral to a coccoid form. Therefore, the main aim of our original article was to determine the influence of myricetin, a natural compound with an antivirulence action, on the morphological transformation of H. pylori and check the potential of myricetin to increase the activity of antibiotics against this pathogen. We observed that sub-minimal inhibitory concentrations (sub-MICs) of this compound have the ability to slow down the process of transformation into coccoid forms and reduce biofilm formation of this bacterium. Using checkerboard assays, we noticed that the exposure of H. pylori to sub-MICs of myricetin enabled a 4–16-fold reduction in MICs of all classically used antibiotics (amoxicillin, clarithromycin, tetracycline, metronidazole, and levofloxacin). Additionally, RT-qPCR studies of genes related to the H. pylori morphogenesis showed a decrease in their expression during exposure to myricetin. This inhibitory effect was more strongly seen for genes involved in the muropeptide monomers shortening (csd3, csd6, csd4, and amiA), suggesting their significant participation in the spiral-to-coccoid transition. To our knowledge, this is the first research showing the ability of any compound to synergistically interact with all five antibiotics against H. pylori and the first one showing the capacity of a natural substance to interfere with the morphological transition of H. pylori from spiral to coccoid forms.

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The carbon source-dependent pattern of antimicrobial activity and gene expression in Pseudomonas donghuensis P482

Scientific Reports ◽

10.1038/s41598-021-90488-w ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Marta Matuszewska ◽

Tomasz Maciąg ◽

Magdalena Rajewska ◽

Aldona Wierzbicka ◽

Sylwia Jafra

Keyword(s):

Gene Expression ◽

Antimicrobial Activity ◽

Carbon Source ◽

Reference Genes ◽

Plant Pathogens ◽

Plant Protection ◽

Carbon Sources ◽

Unknown Compound ◽

Fungal Plant Pathogens ◽

The Impact

AbstractPseudomonas donghuensis P482 is a tomato rhizosphere isolate with the ability to inhibit growth of bacterial and fungal plant pathogens. Herein, we analysed the impact of the carbon source on the antibacterial activity of P482 and expression of the selected genes of three genomic regions in the P482 genome. These regions are involved in the synthesis of pyoverdine, 7-hydroxytropolone (7-HT) and an unknown compound (“cluster 17”) and are responsible for the antimicrobial activity of P482. We showed that the P482 mutants, defective in these regions, show variations and contrasting patterns of growth inhibition of the target pathogen under given nutritional conditions (with glucose or glycerol as a carbon source). We also selected and validated the reference genes for gene expression studies in P. donghuensis P482. Amongst ten candidate genes, we found gyrB, rpoD and mrdA the most stably expressed. Using selected reference genes in RT-qPCR, we assessed the expression of the genes of interest under minimal medium conditions with glucose or glycerol as carbon sources. Glycerol was shown to negatively affect the expression of genes necessary for 7-HT synthesis. The significance of this finding in the light of the role of nutrient (carbon) availability in biological plant protection is discussed.

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Development of mutants of Gliocladium virens tolerant to benomyl

Canadian Journal of Microbiology ◽

10.1139/m90-084 ◽

1990 ◽

Vol 36 (7) ◽

pp. 484-489 ◽

Cited By ~ 12

Author(s):

G. C. Papavizas ◽

D. P. Roberts ◽

K. K. Kim

Keyword(s):

Carbon Source ◽

Type Strain ◽

Wild Type Strain ◽

Carbon Sources ◽

Sclerotium Rolfsii ◽

Wild Type ◽

Gliocladium Virens ◽

Rhizosphere Competence ◽

Filter Paper Cellulase ◽

Type Strains

Aqueous suspensions of conidia of Gliocladium virens strains Gl-3 and Gl-21 were exposed to both ultraviolet radiation and ethyl methanesulfonate. Two mutants of Gl-3 and three of Gl-21 were selected for tolerance to benomyl at 10 μg∙mL−1, as indicated by growth and conidial germination on benomyl-amended potato dextrose agar. The mutants differed considerably from their respective wild-type strains in appearance, growth habit, sporulation, carbon-source utilization, and enzyme activity profiles. Of 10 carbon sources tested, cellobiose, xylose, and xylan were the best for growth, galactose and glucose were intermediate, and arabinose, ribose, and rhamnose were poor sources of carbon. The wild-type strains and the mutants did not utilize cellulose as the sole carbon source for growth. Two benomyl-tolerant mutants of Gl-3 produced less cellulase (β-1,4-glucosidase, carboxymethylcellulase, filter-paper cellulase) than Gl-3. In contrast, mutants of Gl-21 produced more cellulase than the wild-type strain. Only Gl-3 provided control of blight on snapbean caused by Sclerotium rolfsii. Wild-type strain Gl-21 and all mutants from both strains were ineffective biocontrol agents. Key words: Gliocladium, benomyl tolerance, Sclerotium, rhizosphere competence.

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Comparison of clinical acinetobacter strains using a carbon source growth assay

Epidemiology and Infection ◽

10.1017/s0950268800047452 ◽

1990 ◽

Vol 104 (3) ◽

pp. 443-453 ◽

Cited By ~ 9

Author(s):

L. Dijkshoorn ◽

A. Van Ooyen ◽

W. C. J. Hop ◽

M. Theuns ◽

M. F. Michel

Keyword(s):

Cluster Analysis ◽

Carbon Source ◽

Univariate Analysis ◽

Carbon Sources ◽

Protein Profiles ◽

Growth Data ◽

Epidemiological Factors ◽

Growth Assay ◽

Growth Profiles ◽

Related Pattern

SUMMARYA quantitative carbon source growth assay, comprising ten carbon sources, was used to compare acinetobacter strains from three hospitals. The strains had been obtained during episodes of increased prevalence of isolations and were, for each hospital, assumed to be epidemiologically related. This assumption was supported by the electrophoretic protein profiles of the strains. Univariate analysis of growth data showed significant differences between strains from the three hospitals. Moreover, cluster analysis revealed that the major pattern in the data was related to the epidemiological origin of the strains. Exceptions to the epidemic-related pattern were observed. Thus, apart from epidemiological factors, other factors might contribute to carbon source growth profiles of the strains. It is concluded that the carbon growth assay may be useful to distinguish roughly between acinetobacter strains from different sites of origin. Further studies are required to analyse additional factors which influence carbon source growth of strains.

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