Ecological Niche Models Reveal Climate Change Effect on Biogeographical Regions: The Iberian Peninsula as a Case Study

How species are distributed on Earth depends largely on climate factors. Whenever these environmental conditions change, species tend to shift their distributions to reach more favourable conditions. Distinct sets of species similarly distributed (i.e., chorotypes) occur in biogeographical regions with homogeneous environmental conditions. Here, we analysed whether biogeographical regions are unstable over time (from the past to the future). We modelled the realised niche of amphibians and reptiles in the Iberian Peninsula in the present, and several past and future climate scenarios. Then, we used Jaccard’s index and the unweighted pair group method (UPGMA) to define the biogeographical regions. Our results suggest that the biogeographical regions of Iberian amphibians and reptiles changed greatly over time, due to the climatic changes between periods. Biogeographical regions composed of species with Atlantic affinities changed particularly, overall gaining suitable areas in past colder periods and losing suitable areas in warmer periods. The areas of refugia for amphibians over time corresponded to the most humid regions (north-west of the peninsula), while the most important areas for reptiles occur in the south and on the Atlantic coast. The identification of biogeographical patterns considering past climate changes is essential to better apply conservation measures.

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Investigating the Spatiotemporal Genetic Structure of Phytophthora capsici in Michigan

Phytopathology ◽

10.1094/phyto.2001.91.10.973 ◽

2001 ◽

Vol 91 (10) ◽

pp. 973-980 ◽

Cited By ~ 76

Author(s):

K. H. Lamour ◽

M. K. Hausbeck

Keyword(s):

Fragment Length Polymorphism ◽

Aflp Marker ◽

Phytophthora Capsici ◽

Group Method ◽

Analysis Of Molecular Variance ◽

Arithmetic Average ◽

Pair Group ◽

Average Cluster ◽

Over Time ◽

F Statistics

Phytophthora capsici isolates were recovered from pepper and cucurbit hosts at seven locations in Michigan from 1998 to 2000. Isolates were characterized for compatibility type (CT), mefenoxam sensitivity (MS), and amplified fragment length polymorphism (AFLP) marker profiles. In total, 94 AFLP bands were resolved. Individual populations were highly variable. Within populations, 39 to 49% of the AFLP bands were polymorphic and estimated heterozygosities ranged from 0.16 to 0.19. Of the 646 isolates fingerprinted, 70% (454) had unique AFLP profiles. No clones were recovered between years or locations. Pairwise F statistics (ΦST) between populations from different locations ranged from 0.18 to 0.40. A tree based on unweighted pair-group method with arithmetic average cluster analysis indicates discrete clusters based on location. Isolates from the same location showed no clustering based on the year of sampling. Analysis of molecular variance partitioned variability among (40%) and within populations (60%). The overall estimated ΦST was 0.34 (SD = 0.03). A1/A2 CT ratios were ≈1:1, and MS frequencies were similar between years for the two locations sampled over time. These data suggest that P. capsici persists in discrete outcrossing populations and that gene flow among locations in Michigan is infrequent.

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New record of translocated Phoxinus bigerri Kottelat, 2007 from a river basin in the North-West Atlantic coast of the Iberian Peninsula

BioInvasions Records ◽

10.3391/bir.2012.1.1.08 ◽

2012 ◽

Vol 1 (1) ◽

pp. 37-39 ◽

Cited By ~ 2

Author(s):

Javier Sanchez-Hernandez ◽

María Servia ◽

Rufino Vieira-Lanero ◽

Fernando Cobo

Keyword(s):

Iberian Peninsula ◽

River Basin ◽

New Record ◽

Atlantic Coast ◽

North West ◽

The North

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77 The effect of naturally occurring levels of multiple mycotoxins on growth performance and carcass parameters of grow-finish pigs

Journal of Animal Science ◽

10.1093/jas/skaa054.099 ◽

2020 ◽

Vol 98 (Supplement_3) ◽

pp. 54-55

Author(s):

Leigh Ruckman ◽

Stacie Gould ◽

John Patience

Keyword(s):

Growth Performance ◽

Economic Impact ◽

Environmental Conditions ◽

Fixed Effects ◽

Control Diet ◽

Naturally Occurring ◽

Carcass Parameters ◽

Low Levels ◽

Dietary Treatments ◽

Over Time

Abstract Mycotoxins may not be an issue every year, but the proper environmental conditions can cause a spike in contaminated grains and cause severe economic impact on pork producers. The objective of this study was to determine the effect of naturally occurring infections of deoxynivalenol, zearalenone and fumonisins (DZF) on growth performance and carcass parameters in grow/finish pigs. One hundred pigs (BW 34.0 ± 0.9 kg; L337 × Camborough, PIC, Hendersonville, TN) were randomly assigned to 1 of 2 dietary treatments with 10 split-sex pens/treatment. The control diet (CTL) contained low levels of DZF and the CTL+DFZ diet contained high levels of DZF. Diets were fed in 4 phases over the 126-d experiment period. The CTL diet contained 1.6, 1.6, 1.8 and 1.2 mg deoxynivalenol/kg and CTL+DZF contained 9.2, 6.9, 5.8 and 3.8 mg deoxynivalenol/kg in the 4 diet phases, respectively. The CTL contained 0.30, 0.32, 0.51 and 0.32 mg zearalenone/kg and 0.7, 0.8, 0.8 and 0.9 mg total fumonisins/kg; CTL+DFZ contained 0.59, 0.72, 0.86 and 0.57 mg zearalenone/kg and 1.0, 1.1, 1.2 and 0.9 mg total fumonisins/kg for phases one through four, respectively. Data were analyzed using PROC MIXED of SAS (9.4) with treatment, sex, and their interaction as fixed effects. Compared to CTL, feeding CTL+DFZ decreased final BW (130.3 vs 120.5 kg; P< 0.001), ADG (0.95 vs 0.79 kg/d; P< 0.001), ADFI (2.73 vs 2.49 kg/d; P=0.016), and G:F (0.35 vs 0.32; P=0.043). Feeding CTL+DFZ decreased HCW (92.3 vs 89.4 kg; P=0.024) and increased dressing percentage (70.9 vs 74.3%; P=0.009) and tended to reduce loin depth (7.0 vs 6.8 cm; P=0.057) compared to CTL. Diet did not affect backfat depth or lean percentage (P >0.10). In conclusion, diets naturally contaminated with multiple mycotoxins reduced growth performance and adversely affected carcass parameters; pigs did not adapt over time to the mycotoxins.

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Genetic Diversity Among Some Walnut (Juglans regia L.) Genotypes by SSR Markers

Sustainability ◽

10.3390/su13126830 ◽

2021 ◽

Vol 13 (12) ◽

pp. 6830

Author(s):

Murat Guney ◽

Salih Kafkas ◽

Hakan Keles ◽

Mozhgan Zarifikhosroshahi ◽

Muhammet Ali Gundesli ◽

...

Keyword(s):

Genetic Diversity ◽

Plant Genetic Resources ◽

Juglans Regia ◽

Genetic Distances ◽

Mean Value ◽

Central Anatolia ◽

Group Method ◽

Arithmetic Average ◽

Pair Group ◽

Principal Coordinates

The food needs for increasing population, climatic changes, urbanization and industrialization, along with the destruction of forests, are the main challenges of modern life. Therefore, it is very important to evaluate plant genetic resources in order to cope with these problems. Therefore, in this study, a set of ninety-one walnut (Juglans regia L.) accessions from Central Anatolia region, composed of seventy-four accessions and eight commercial cultivars from Turkey, and nine international reference cultivars, was analyzed using 45 SSR (Simple Sequence Repeats) markers to reveal the genetic diversity. SSR analysis identified 390 alleles for 91 accessions. The number of alleles per locus ranged from 3 to 19 alleles with a mean value of 9 alleles per locus. Genetic dissimilarity coefficients ranged from 0.03 to 0.68. The highest number of alleles was obtained from CUJRA212 locus (Na = 19). The values of polymorphism information content (PIC) ranged from 0.42 (JRHR222528) to 0.86 (CUJRA212) with a mean PIC value of 0.68. Genetic distances were estimated according to the UPGMA (Unweighted Pair Group Method with Arithmetic Average), Principal Coordinates (PCoA), and the Structure-based clustering. The UPGMA and Structure clustering of the accessions depicted five major clusters supporting the PCoA results. The dendrogram revealed the similarities and dissimilarities among the accessions by identifying five major clusters. Based on this study, SSR analyses indicate that Yozgat province has an important genetic diversity pool and rich genetic variance of walnuts.

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Social Change and Psychological Change in Rural Mali

Journal of Asian and African Studies ◽

10.1177/0021909616632278 ◽

2016 ◽

Vol 52 (7) ◽

pp. 965-981 ◽

Cited By ~ 1

Author(s):

Carmi Schooler ◽

Leslie J Caplan ◽

Pakuy Pierre Mounkoro ◽

Chiaka Diakité

Keyword(s):

Social Change ◽

Environmental Change ◽

Environmental Conditions ◽

Economic Hardship ◽

Psychological Change ◽

Self Confidence ◽

Personality Stability ◽

Psychological Reaction ◽

Using Data ◽

Over Time

We examine the effects of socio-environmental change on personality in Mali in three ways, using data from a longitudinal two-wave (1994, 2004) survey conducted in rural Mali. Firstly, we compare the between-wave personality stability of Anxiety, Self-confidence, Mastery/Fatalism, and Authoritarianism with that in USA, Japan, Poland, and Ukraine. Secondly, we examine socio-economic hardship and political instability in pre-industrial Mali. Thirdly, we examine patterns of psychological reaction to political and social change during the study period. Our findings have implications for comparisons and generalizations across times and cultures about the contribution of socio-environmental conditions to over-time change in personality.

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Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

BMC Genomics ◽

10.1186/s12864-020-07329-9 ◽

2021 ◽

Vol 22 (1) ◽

Author(s):

Melanie Lindner ◽

Irene Verhagen ◽

Heidi M. Viitaniemi ◽

Veronika N. Laine ◽

Marcel E. Visser ◽

...

Keyword(s):

Gene Expression ◽

Dna Methylation ◽

Environmental Conditions ◽

Brain Regions ◽

Temporal Changes ◽

Egg Laying ◽

Gene Body ◽

Cpg Site ◽

Repeated Sampling ◽

Over Time

Abstract Background DNA methylation is likely a key mechanism regulating changes in gene transcription in traits that show temporal fluctuations in response to environmental conditions. To understand the transcriptional role of DNA methylation we need simultaneous within-individual assessment of methylation changes and gene expression changes over time. Within-individual repeated sampling of tissues, which are essential for trait expression is, however, unfeasible (e.g. specific brain regions, liver and ovary for reproductive timing). Here, we explore to what extend between-individual changes in DNA methylation in a tissue accessible for repeated sampling (red blood cells (RBCs)) reflect such patterns in a tissue unavailable for repeated sampling (liver) and how these DNA methylation patterns are associated with gene expression in such inaccessible tissues (hypothalamus, ovary and liver). For this, 18 great tit (Parus major) females were sacrificed at three time points (n = 6 per time point) throughout the pre-laying and egg-laying period and their blood, hypothalamus, ovary and liver were sampled. Results We simultaneously assessed DNA methylation changes (via reduced representation bisulfite sequencing) and changes in gene expression (via RNA-seq and qPCR) over time. In general, we found a positive correlation between changes in CpG site methylation in RBCs and liver across timepoints. For CpG sites in close proximity to the transcription start site, an increase in RBC methylation over time was associated with a decrease in the expression of the associated gene in the ovary. In contrast, no such association with gene expression was found for CpG site methylation within the gene body or the 10 kb up- and downstream regions adjacent to the gene body. Conclusion Temporal changes in DNA methylation are largely tissue-general, indicating that changes in RBC methylation can reflect changes in DNA methylation in other, often less accessible, tissues such as the liver in our case. However, associations between temporal changes in DNA methylation with changes in gene expression are mostly tissue- and genomic location-dependent. The observation that temporal changes in DNA methylation within RBCs can relate to changes in gene expression in less accessible tissues is important for a better understanding of how environmental conditions shape traits that temporally change in expression in wild populations.

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Genome-Wide Identification and Development of LTR Retrotransposon-Based Molecular Markers for the Melilotus Genus

Plants ◽

10.3390/plants10050890 ◽

2021 ◽

Vol 10 (5) ◽

pp. 890

Author(s):

Zifeng Ouyang ◽

Yimeng Wang ◽

Tiantian Ma ◽

Gisele Kanzana ◽

Fan Wu ◽

...

Keyword(s):

Group Method ◽

Ltr Retrotransposon ◽

Ltr Retrotransposons ◽

Important Data ◽

Breeding Programs ◽

Upgma Dendrogram ◽

Pair Group ◽

Medicinal Value ◽

Genome Wide ◽

Melilotus Albus

Melilotus is an important genus of legumes with industrial and medicinal value, partly due to the production of coumarin. To explore the genetic diversity and population structure of Melilotus, 40 accessions were analyzed using long terminal repeat (LTR) retrotransposon-based markers. A total of 585,894,349 bp of LTR retrotransposon sequences, accounting for 55.28% of the Melilotus genome, were identified using bioinformatics tools. A total of 181,040 LTR retrotransposons were identified and classified as Gypsy, Copia, or another type. A total of 350 pairs of primers were designed for assessing polymorphisms in 15 Melilotus albus accessions. Overall, 47 polymorphic primer pairs were screened for their availability and transferability in 18 Melilotus species. All the primer pairs were transferable, and 292 alleles were detected at 47 LTR retrotransposon loci. The average polymorphism information content (PIC) value was 0.66, which indicated that these markers were highly informative. Based on unweighted pair group method with arithmetic mean (UPGMA) dendrogram cluster analysis, the 18 Melilotus species were classified into three clusters. This study provides important data for future breeding programs and for implementing genetic improvements in the Melilotus genus.

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Protected Areas: offering security to whom, when and where?

Environmental Conservation ◽

10.1017/s0376892915000375 ◽

2016 ◽

Vol 43 (2) ◽

pp. 172-180 ◽

Cited By ~ 7

Author(s):

ALICE B. KELLY ◽

A. CLARE GUPTA

Keyword(s):

Protected Areas ◽

Environmental Conditions ◽

Protected Area ◽

Spatial Scales ◽

Local Population ◽

Well Being ◽

Economic Context ◽

Term Management ◽

Over Time

SUMMARYThis study considers the issue of security in the context of protected areas in Cameroon and Botswana. Though the literature on issues of security and well-being in relation to protected areas is extensive, there has been less discussion of how and in what ways these impacts and relationships can change over time, vary with space and differ across spatial scales. Looking at two very different historical trajectories, this study considers the heterogeneity of the security landscapes created by Waza and Chobe protected areas over time and space. This study finds that conservation measures that various subsets of the local population once considered to be ‘bad’ (e.g. violent, exclusionary protected area creation) may be construed as ‘good’ at different historical moments and geographical areas. Similarly, complacency or resignation to the presence of a park can be reversed by changing environmental conditions. Changes in the ways security (material and otherwise) has fluctuated within these two protected areas has implications for the long-term management and funding strategies of newly created and already existing protected areas today. This study suggests that parks must be adaptively managed not only for changing ecological conditions, but also for shifts in a protected area's social, political and economic context.

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A reinterpretation of Scottish ‘hummocky moraine’ and its significance for the deglaciation of the Scottish Highlands during the Younger Dryas or Loch Lomond Stadial

Geological Magazine ◽

10.1017/s0016756800019993 ◽

1993 ◽

Vol 130 (3) ◽

pp. 301-318 ◽

Cited By ~ 85

Author(s):

Matthew R. Bennett ◽

Geoffrey S. Boulton

Keyword(s):

Environmental Conditions ◽

Field Survey ◽

Spatial Scales ◽

Younger Dryas ◽

North West ◽

Scottish Highlands ◽

Ice Cap ◽

The North ◽

Loch Lomond

AbstractThe aim of this paper is to demonstrate that much of the ‘hummocky moraine’ present within the northern part of the LochLomond Readvance ice cap formerly situated in the North West Scottish Highlands may be interpreted as suites of ice-front moraines deposited during active decay. These landforms can be used to reconstruct ice cap decay, whichleads to important insights into the shrinking form of the ice cap and associated environmental conditions. Evidence has been collected from 10803 airphotographs and from detailed field survey. It is presented at three spatial scales.

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Genetic diversity in table grapes based on RAPD and microsatellite markers

Pesquisa Agropecuária Brasileira ◽

10.1590/s0100-204x2011000900010 ◽

2011 ◽

Vol 46 (9) ◽

pp. 1035-1044 ◽

Cited By ~ 9

Author(s):

Patrícia Coelho de Souza Leão ◽

Sérgio Yoshimitsu Motoike

Keyword(s):

Genetic Diversity ◽

Microsatellite Markers ◽

Genetic Relationships ◽

Similarity Index ◽

Genetic Distances ◽

Table Grape ◽

Group Method ◽

Molecular Characteristics ◽

Table Grapes ◽

Pair Group

The objective of this work was to analyze the genetic diversity of 47 table grape accessions, from the grapevine germplasm bank of Embrapa Semiárido, using 20 RAPD and seven microsatellite markers. Genetic distances between pairs of accessions were obtained based on Jaccard's similarity index for RAPD data and on the arithmetic complement of the weighted index for microsatellite data. The groups were formed according to the Tocher's cluster analysis and to the unweighted pair‑group method with arithmetic mean (UPGMA). The microsatellite markers were more efficient than the RAPD ones in the identification of genetic relationships. Information on the genetic distance, based on molecular characteristics and coupled with the cultivar agronomic performance, allowed for the recommendation of parents for crossings, in order to obtain superior hybrids in segregating populations for the table grape breeding program of Embrapa Semiárido.

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