scholarly journals Relationship of Cultivated Grain Amaranth Species and Wild Relative Accessions

Genes ◽  
2021 ◽  
Vol 12 (12) ◽  
pp. 1849
Author(s):  
Ranjita Thapa ◽  
Matthew Edwards ◽  
Matthew W. Blair
Keyword(s):  
Wild Species ◽  
Germplasm Conservation ◽  
Conservation Strategies ◽  
South American Species ◽  
Amaranthus Cruentus ◽  
Amaranthus Hypochondriacus ◽  
Major Allele Frequency ◽  
Population Structure Analysis ◽  
Amaranth Species ◽  
Relationship Of

Amaranthus is a genus of C4 dicotyledonous herbaceous plants, and three New World species have been domesticated to produce grain crops with light colored seed which are classified as pseudo-cereals rich in protein and minerals. A core collection of grain amaranths and immediate precursor species has been established, representing the closest related species. The goal of this study was to evaluate the genetic diversity in that collection of cultivated and wild species, using competitive allele single nucleotide polymorphism markers. A secondary objective was to determine the relationships among the three cultivated species and non-domesticated Amaranthus, while a third objective was to evaluate the utility of the markers in detecting diversity in the 276 genotypes. The markers were found to be highly variable with an average polymorphism information content of 0.365. All markers were bi-allelic; and the major allele frequency ranged from 0.388 to 0.871. Population structure analysis of the cultigens revealed the presence of two sub populations. Phylogeny confirmed that the two Mesoamerican species, Amaranthus cruentus and Amaranthus hypochondriacus, were related and distant from the South American species Amaranthus caudatus, which in turn was very closely clustered with Amaranthus quitensis, even though this is considered a weedy relative. The first pair of species were likely to have inter-crossed, while the latter two likely exist in a wild-cultivated hybrid state. In conclusion, the results of this SNP study provided insights on amaranth cultivars and their relationship to wild species, the probable domestication events leading to the cultivars, and possible crop breeding or germplasm conservation strategies.

scholarly journals Genetic Variability and Relationship of Closely Related Spanish Traditional Cultivars of Tomato as Detected by SRAP and SSR Markers

2005 ◽  
Vol 130 (1) ◽  
pp. 88-94 ◽  
Author(s):  
Juan J. Ruiz ◽  
Santiago García-Martínez ◽  
Belén Picó ◽  
Muquiang Gao ◽  
Carlos F. Quiros
Keyword(s):  
Genetic Variability ◽  
Ssr Markers ◽  
Wild Species ◽  
Germplasm Conservation ◽  
Geographic Range ◽  
Small Sample ◽  
Srap Markers ◽  
Traditional Cultivars ◽  
Relationship Of ◽  
Simple Sequence

We studied the genetic variability of some traditional tomato (Lycopersicon esculentum L. Mill.) cultivars of Spain, and established their relationships using both simple sequence repeats (SSR) and sequence related amplified polymorphism (SRAP) markers. These included cultivars from different locations of three main types, Muchamiel, De la pera, and Moruno. Additionally we tested two other local cultivars, `Valenciano' and `Flor de Baladre', plus a small sample of commercial cultivars and a few wild species. Both types of markers resolved the cultivars from different groups, but SSR failed to distinguish some of those classified under the same group. All the De la pera cultivars clustered together by genetic similarity with the SRAP markers. The other traditional cultivars, which are grown in a wider geographic range, formed a more diffuse group, which included the commercial cultivar Roma. The Mexican cultivar Zapotec, a breeding line, and the virus-resistant commercial hybrid `Anastasia' were the most distant of all the cultivars. The latter hybrid had higher similarity to the wild species due to introgressed segments from them carrying the resistance genes. Similar results were observed for SSR markers but with a lower level of resolution. This information would be useful to facilitate tomato germplasm conservation and management efforts.

scholarly journals Evaluation of the Nutrient Composition, In Vitro Fermentation Characteristics, and In Situ Degradability of Amaranthus caudatus, Amaranthus cruentus, and Amaranthus hypochondriacus in Cattle

Animals ◽  
2020 ◽  
Vol 11 (1) ◽  
pp. 18
Author(s):  
Kim Margarette C. Nogoy ◽  
Jia Yu ◽  
Young Gyu Song ◽  
Shida Li ◽  
Jong-Wook Chung ◽  
...  
Keyword(s):  
Crude Protein ◽  
Dry Matter ◽  
Gas Production ◽  
Nutrient Composition ◽  
Neutral Detergent Fiber ◽  
Amaranthus Cruentus ◽  
Amaranthus Caudatus ◽  
Amaranthus Hypochondriacus

The amaranth plants showed high potential feed value as forage for ruminants. An in-depth study of this plant, particularly in cattle, will help extend its utilization as an alternative protein and fiber feed source in cattle feeding. In this study, the nutrient compositions of three different species of amaranth, Amaranthus caudatus L., Amaranthus cruentus L., and Amaranthus hypochondriacus L.—two varieties for each species, A.ca 74, A.ca 91, A.cu 62, A.cu 66, A. hy 30, and A. hy 48—were evaluated. The in vitro technique was used to evaluate the fermentation characteristics such as total gas production, total volatile fatty acids (VFA) concentration, pH, and ammonia concentration of the rumen fluid. Moreover, the effective degradabilities of dry matter (EDDM) and crude protein (EDCP) of the amaranth forages were determined through in situ bag technique. The amaranth forages: A. caudatus, A. cruentus, and A. hypochondriacus showed better nutritive value than the locally produced forages in Chungcheong province of Korea. The CP of the amaranth ranged from 11.95% to 14.19%, and the neutral detergent fiber (NDF) and acid detergent fiber (ADF) contents ranged from 45.53% to 70.88% and 34.17% to 49.83%, respectively. Among the amaranth varieties, A. hypochondriacus 48 showed the most excellent ruminant feed nutrient quality (CP, 14.19%; NDF, 45.53%; and ADF, 34.17%). The effective degradabilities of dry matter (EDDM; 33–56%) and crude protein EDCP (27–59%) of the amaranth were lower compared to other studies, which could be due to the maturity stage at which the forages were harvested. Nonetheless, A. hypochondriacus 48 showed the highest EDDM (56.73%) and EDCP (59.09%). The different amaranth species did not differ greatly in terms of total VFA concentration or molar proportions, total gas production, or ammonia-N concentration. The high nutrient composition, and highly effective degradability of dry matter and crude protein, coupled with the favorable fermentation characteristics, suggest that the amaranth forages showed good to excellent feed quality for cattle.

scholarly journals In vitro performance in cotton plants with different genetic backgrounds: the case of Gossypium hirsutum in Mexico, and its implications for germplasm conservation

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e7017 ◽  
Author(s):  
Alejandra Hernández-Terán ◽  
Ana Wegier ◽  
Mariana Benítez ◽  
Rafael Lira ◽  
Tania Gabriela Sosa Fuentes ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Biodiversity Conservation ◽  
Crop Production ◽  
Statistical Tests ◽  
Germplasm Conservation ◽  
Ex Situ ◽  
Conservation Strategies ◽  
Wild Germplasm ◽  
Wild Cotton

One of the best ex situ conservation strategies for wild germplasm is in vitro conservation of genetic banks. The success of in vitro conservation relies heavily on the micropropagation or performance of the species of interest. In the context of global change, crop production challenges and climate change, we face a reality of intensified crop production strategies, including genetic engineering, which can negatively impact biodiversity conservation. However, the possible consequences of transgene presence for the in vitro performance of populations and its implications for biodiversity conservation are poorly documented. In this study we analyzed experimental evidence of the potential effects of transgene presence on the in vitro performance of Gossypium hirsutum L. populations, representing the Mexican genetic diversity of the species, and reflect on the implications of such presence for ex situ genetic conservation of the natural variation of the species. We followed an experimental in vitro performance approach, in which we included individuals from different wild cotton populations as well as individuals from domesticated populations, in order to differentiate the effects of domestication traits dragged into the wild germplasm pool via gene flow from the effects of transgene presence. We evaluated the in vitro performance of five traits related to plant establishment (N = 300): propagation rate, leaf production rate, height increase rate, microbial growth and root development. Then we conducted statistical tests (PERMANOVA, Wilcoxon post-hoc tests, and NMDS multivariate analyses) to evaluate the differences in the in vitro performance of the studied populations. Although direct causality of the transgenes to observed phenotypes requires strict control of genotypes, the overall results suggest detrimental consequences for the in vitro culture performance of wild cotton populations in the presence of transgenes. This provides experimental, statistically sound evidence to support the implementation of transgene screening of plants to reduce time and economic costs in in vitro establishment, thus contributing to the overarching goal of germplasm conservation for future adaptation.

Genome affinity and meiotic behaviour in trigenomic hybrids and their doubled allohexaploids between three cultivated Brassica allotetraploids and Brassica fruticulosa

Genome ◽  
2012 ◽  
Vol 55 (2) ◽  
pp. 164-171 ◽  
Author(s):  
J.P. Chen ◽  
X.H. Ge ◽  
X.C. Yao ◽  
Z.Y. Li
Keyword(s):  
Wild Species ◽  
Chromosome Doubling ◽  
Brassica Species ◽  
Low Fertility ◽  
Meiotic Behavior ◽  
Homologous Pairing ◽  
Mother Cells ◽  
Relationship Of ◽  
Brassica Fruticulosa ◽  
Cytological Behaviour

The wild species Brassica fruticulosa Cyr. (FF, 2n = 16) is closely related to the cultivated Brassica species. Through interspecific reciprocal crosses between B. fruticulosa and three cultivated Brassica allotetraploids (AABB, AACC, and BBCC where A = 10, B = 8, and C = 9), four trigenomic hybrids (F.AC, 2n = 27; F.AB, 2n = 26; F.BC, 2n = 25; BC.F, 2n = 25) were produced. By chromosome doubling of respective hybrids, three allohexaploids (FF.AACC, 2n = 54; FF.AABB, 2n = 52; BBCC.FF, 2n = 50) were synthesized. In pollen mother cells (PMCs) of the trigenomic hybrids, 1–2 autosyndetic bivalents were detected within A, B, and C genomes but only one within F genome; 1–3 allosyndetic bivalents between any two genomes were observed, and a closer relationship of F and B genomes than F and A genomes or F and C genomes was revealed. The allohexaploids showed a generally low but different pollen fertilities. The chromosomes in PMCs were predominantly paired as bivalents but some univalents and multivalents at variable frequencies were observed. The bivalents of homologous pairing for each genome prevailed, but allosyndetic quadrivalents and hexavalents involving any two genomes were observed, together with autosyndetic quadrivalents for A, B, and C genomes but not the F genome. The nondiploidized cytological behaviour of these allohexaploids contributed to their low fertility. The relationships between the genome affinity and meiotic behavior in these allohexaploids were discussed.

scholarly journals Genetic diversity among flue-cured tobacco cultivars on the basis of AFLP markers

2009 ◽  
Vol 45 (No. 4) ◽  
pp. 155-159 ◽  
Author(s):  
X.Z. Liu ◽  
C.S. He ◽  
Y.M. Yang ◽  
H.Y. Zhang
Keyword(s):  
Genetic Diversity ◽  
Yunnan Province ◽  
Southwest China ◽  
Germplasm Conservation ◽  
Research Centre ◽  
Aflp Data ◽  
Breeding Research ◽  
Polymorphic Bands ◽  
Relationship Of ◽  
The Relationship

AFLP analyses were used to assess the genetic similarity among selected accessions at the South China Tobacco Breeding Research Centre (Yunnan province, Southwest China). 154 AFLP polymorphic fragments out of 561 fragments were used to assess the genetic diversity among 28 tobacco accessions. The average number of polymorphic bands per AFLP primer pair was 15.4. AFLPs seemed to be an effective classification tools for germplasm conservation and breeding. Limited genetic variation was detected within this group of accessions. The relationship of cultivars was estimated by cluster analysis based on AFLP data.

Identity of Archaeologic Grain Amaranths from the Valley of Tehuacan, Puebla, Mexico

1969 ◽  
Vol 34 (1) ◽  
pp. 80-81 ◽  
Author(s):  
Jonathan D. Sauer
Keyword(s):  
Amaranthus Cruentus ◽  
Amaranthus Hypochondriacus ◽  
Grain Crops

AbstractCoxcatlán Cave has yielded the earliest records of two domesticated species still grown as minor grain crops in Mexico. Amaranthus cruentus, previously unknown archaeologically, is tentatively identified from a level dated at about 4000 B.C. and positively identified from six levels dated between about 2500 B.C. and the time of the Conquest. Amaranthus hypochondriacus was found at two levels dated about A.D. 500. There is no evidence that either species was domesticated locally.

Evaluation of fatty acid composition among selected amaranth grains grown in two consecutive years

Biologia ◽  
2013 ◽  
Vol 68 (4) ◽  
Author(s):  
Andrea Hlinková ◽  
Adriána Bednárová ◽  
Michaela Havrlentová ◽  
Jana Šupová ◽  
Iveta Čičová
Keyword(s):  
Fatty Acids ◽  
Oleic Acid ◽  
Oil Content ◽  
Unsaturated Fatty Acids ◽  
Strong Positive Correlation ◽  
Amaranthus Cruentus ◽  
Amaranthus Hypochondriacus ◽  
Fatty Acids Profile ◽  
Linoleic Acid Level ◽  
Amaranthus Spp

AbstractThe oil of amaranth grain (Amaranthus spp.) is a rich source of poly-unsaturated fatty acids. In this study, we tested 10 amaranth samples representing two species (Amaranthus cruentus and Amaranthus hypochondriacus) in two consecutive years (2010, 2011). Grain oils were analysed by gas chromatography for their fatty acids profile. In 2010, oil content ranged from 6.4–8.2% for A. cruentus and 6.3–7.9% for A. hypochondriacus. In 2011, the level was 7.1–8.2% and 6.6–8.7% for A. cruentus and A. hypochondriacus, respectively. Linoleic, palmitic, and oleic acids were dominant fatty acids in all of the oil samples. The essential linoleic acid level was 33.3–38.7% (A. cruentus) and 31.7–47.5% (A. hypochondriacus) in 2010 and 34.6–39.9% (A. cruentus) and 34–44.5% (A. hypochondriacus) in 2011. The minority fatty acids, i.e. stearic, α-linolenic, and arachidic acids were also observed. Eicosenoic and behenic acids were present in the grain in trace amounts. Statistical evaluation showed a significant effect of year and species of amaranth on the levels of certain fatty acids. There was a strong positive correlation between oil content and oleic acid, and a negative correlation between oleic acid and either of the other two fatty acids, linoleic and α-linolenic ones.

Characterization of microsatellite loci developed for Amaranthus hypochondriacus and their cross-amplifications in wild species

2007 ◽  
Vol 9 (1) ◽  
pp. 243-246 ◽  
Author(s):  
Jung-Ro Lee ◽  
Gi-Yun Hong ◽  
Anupam Dixit ◽  
Jong-Wook Chung ◽  
Kyung-Ho Ma ◽  
...  
Keyword(s):  
Microsatellite Loci ◽  
Wild Species ◽  
Amaranthus Hypochondriacus

scholarly journals Genetic Diversity and Variability in Endangered Pantesco and Two Other Sicilian Donkey Breeds Assessed by Microsatellite Markers

2012 ◽  
Vol 2012 ◽  
pp. 1-6 ◽  
Author(s):  
Salvatore Bordonaro ◽  
Anna Maria Guastella ◽  
Andrea Criscione ◽  
Antonio Zuccaro ◽  
Donata Marletta
Keyword(s):  
Genetic Diversity ◽  
Population Structure ◽  
Genetic Variability ◽  
Genetic Information ◽  
Gene Diversity ◽  
Genetic Distances ◽  
Conservation Strategies ◽  
Population Structure Analysis ◽  
The Mean ◽  
Differentiation Index

The genetic variability of Pantesco and other two Sicilian autochthonous donkey breeds (Ragusano and Grigio Siciliano) was assessed using a set of 14 microsatellites. The main goals were to describe the current differentiation among the breeds and to provide genetic information useful to safeguard the Pantesco breed as well as to manage Ragusano and Grigio Siciliano. In the whole sample, that included 108 donkeys representative of the three populations, a total of 85 alleles were detected. The mean number of alleles was lower in Pantesco (3.7), than in Grigio Siciliano and Ragusano (4.4 and 5.9, resp.). The three breeds showed a quite low level of gene diversity (He) ranging from 0.471 in Pantesco to 0.589 in Grigio. The overall genetic differentiation index (Fst) was quite high; more than 10% of the diversity was found among breeds. Reynolds’ () genetic distances, correspondence, and population structure analysis reproduced the same picture, revealing that, (a) Pantesco breed is the most differentiated in the context of the Sicilian indigenous breeds, (b) within Ragusano breed, two well-defined subgroups were observed. This information is worth of further investigation in order to provide suitable data for conservation strategies.

scholarly journals Cyanobacteria is uniquely enriched in the roots of grain amaranths

2019 ◽  
Author(s):  
Suran Nambisan ◽  
Meeta Sunil ◽  
Bibha Choudhary ◽  
Subhashini Srinivasan
Keyword(s):  
Abiotic Stress ◽  
16S Rrna ◽  
Positive Selection ◽  
Soil Microbes ◽  
Selective Advantage ◽  
Negative Control ◽  
Relative Increase ◽  
Biotic And Abiotic Stress ◽  
Amaranthus Hypochondriacus ◽  
Amaranth Species

ABSTRACTPlants and microbes have coexisted for millions of years and some have evolved mechanisms to achieve symbiosis driving positive selection. The bartering of chemicals produced by soil microbes and plants favour enrichment of certain types of bacteria near the roots that offers selective advantage to the plant under a given environment. Grain amaranths display certain important agronomic characteristics like C4 dicot, high protein and high lysine grains, resistance to biotic and abiotic stress, which can be translated to other crops. Considering an unusual collection of desirable traits shown by grain amaranths, it is worth pondering if symbiosis with bacteria has played any role in these traits. The objective of this study is to identify bacterial root microflora unique to grain amaranths. Here, by comparing rhizospheric and endophytic composition of 16S rRNA from various sections of roots from selected species under major plant orders including the three varieties of grain amaranths, we report that Cyanobacteria are uniquely enriched by grain amaranths. The diversity in OTUs among the Cyanobacteria also significantly increased among samples from amaranth species compared to negative control. This finding is also validated using root transcriptome of Amaranthus hypochondriacus, where we observe relative increase in Cyanobacterial population between day 15 to day 30 compared to other abundant phylum during this period.

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