scholarly journals Morphological and molecular assessment of mushroom (Lentinus Squarrosulus) (mont.) Singer

2021 ◽  
Vol 23 (2) ◽  
pp. 43-52
Author(s):  
C. O. Adenipekun ◽  
L. A. Ogunkanmi ◽  
O. Onibonoje
Keyword(s):  
Gene Diversity ◽  
Marker Gene ◽  
Fungal Species ◽  
Natural Habitats ◽  
Mean Values ◽  
Economic Significance ◽  
Discriminating Power ◽  
The Family ◽  
Pure Cultures ◽  
Unique Band

Lentinus squarrosulus is a popular mushroom in Nigeria used for traditional medicine apart from food. The identification of those high-quality fungal species is not only necessary but has great economic significance as it will allow product distributors to verify the material they are selling. Hence, this study investigated the morphological and molecular relationship among L. squarrosulus samples from different locations in Ibadan. Ten samples of L. squarrosulus were collected from nine different natural habitats in Ibadan, Oyo State, Nigeria, from which pure cultures were prepared. Isolation of DNA was done from fruiting bodies of fresh samples evaluated. Ten primers were designed from ITS sequences of the Family Agariceae and used for the study. The ten mushrooms evaluated in the study showed diverse morphological features such as colour of cap and pileus, size of stipe and pileus. A total of 50 amplicons were generated of which 31 bands (62%) were polymorphic. The RAPD variety-specific products were generated in some of the genotypes evaluated which can serve as unique identifiers. The study showed mean values for marker gene diversity of 0.27, Polymorphism Information Content (PIC) of 0.25 and 63.81% polymorphism. Both morphological and molecular analyses revealed two clustered groups. Number and types of samples in each group were not the same in both studies. The presence of unique band pattern among sampled fungi evaluated showed the discriminating power of the primer Ast-F in the study. Keywords: Polymorphism, DNA, RAPD, Fungi, Gene diversity characterization

scholarly journals Fungi inhabiting the aboveground organs of downy willow (Salix lapponum L.) and swamp willow (Salix myrtilloides L.)

2019 ◽  
Vol 54 (2) ◽  
Author(s):  
Ewa Dorota Zalewska ◽  
Magdalena Pogorzelec ◽  
Ewa Dorota Król ◽  
Artur Serafin
Keyword(s):  
Plant Pathogens ◽  
Fungal Species ◽  
Peat Bogs ◽  
Lake District ◽  
Natural Habitats ◽  
Disease Symptoms ◽  
Cytospora Chrysosperma ◽  
The Family ◽  
Bacteria And Fungi ◽  
Salix Lapponum

The species of downy willow (<em>Salix lapponum</em>) and swamp willow (<em>Salix myrtilloides</em>) are extremely rare relicts among all members of the genus <em>Salix</em>. In Poland, they occur only in the eastern part of the Karkonosze Mountains, Masurian Lake District, and Polesie Lubelskie area. A huge threat to both species is the drainage of peat bogs and their excessive exploitation as well as diseases caused by bacteria and fungi. The present study aimed identify fungal species colonizing the aboveground organs of plants with disease symptoms and to indicate which species may pose a threat towards <em>S. lapponum</em> and <em>S. myrtilloides</em> growing under natural conditions. This research was conducted in Polesie National Park as a part of a research project by the Ministry of Science and Higher Education. Plant health assessments were carried out in natural habitats, while aboveground organs with disease symptoms were collected for laboratory mycological analysis. <em>Colletotrichum salicis</em> (teleomorph <em>Glomerella salicis</em>), <em>Coniothyrium concentricum</em>, <em>Cylindrosporium salicinum</em>, <em>Phomopsis</em> spp., <em>Truncatella angustata</em>, and <em>Cytospora chrysosperma</em> (teleomorph <em>Valsa sordida</em>) were the fungal species most frequently isolated from leaves and shoots of both willow species. The above-mentioned fungi are dangerous plant pathogens from the family Salicaceae. There were no obligatory parasites or monophagous pathogens on the aboveground organs of downy or swamp willow. Obligatory parasites may indicate a markedly low population of host plants in Polish conditions.

scholarly journals Development of a Co-Dominant Cleaved Amplified Polymorphic Sequences Assay for the Rapid Detection and Differentiation of Two Pathogenic Clarireedia spp. Associated with Dollar Spot in Turfgrass

Agronomy ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 1489
Author(s):  
Tammy Stackhouse ◽  
Sumyya Waliullah ◽  
Alfredo D. Martinez-Espinoza ◽  
Bochra Bahri ◽  
Emran Ali
Keyword(s):  
Pcr Primers ◽  
The United States ◽  
Fungal Species ◽  
Dollar Spot ◽  
Direct Pcr ◽  
Specific Pcr ◽  
Specificity And Sensitivity ◽  
Pure Cultures ◽  
Speed Up ◽  
Cleaved Amplified Polymorphic Sequences

Dollar spot is one of the most destructive diseases in turfgrass. The causal agents belong to the genus Clarireedia, which are known for causing necrotic, sunken spots in turfgrass that coalesce into large damaged areas. In low tolerance settings like turfgrass, it is of vital importance to rapidly detect and identify the pathogens. There are a few methods available to identify the genus Clarireedia, but none of those are rapid enough and characterize down to the species level. This study produced a co-dominant cleaved amplified polymorphic sequences (CAPS) test that differentiates between C. jacksonii and C. monteithiana, the two species that cause dollar spot disease within the United States. The calmodulin gene (CaM) was targeted to generate Clarireedia spp. specific PCR primers. The CAPS assay was optimized and tested for specificity and sensitivity using DNA extracted from pure cultures of two Clarireedia spp. and other closely related fungal species. The results showed that the newly developed primer set could amplify both species and was highly sensitive as it detected DNA concentrations as low as 0.005 ng/µL. The assay was further validated using direct PCR to speed up the diagnosis process. This drastically reduces the time needed to identify the dollar spot pathogens. The resulting assay could be used throughout turfgrass settings for a rapid and precise identification method in the US.

The mycobiome of the oral cavity in healthy dogs and dogs with periodontal disease

2022 ◽  
pp. 1-8
Author(s):  
Brook A. Niemiec ◽  
Jerzy Gawor ◽  
Shuiquan Tang ◽  
Aishani Prem ◽  
Janina A. Krumbeck
Keyword(s):  
Oral Cavity ◽  
Periodontal Disease ◽  
Dna Sequencing ◽  
Fungal Species ◽  
Next Generation ◽  
Data Set ◽  
Next Generation Dna Sequencing ◽  
Sequencing Platform ◽  
The Family ◽  
Healthy Dogs

Abstract OBJECTIVE To investigate the mycobiome of the oral cavity in healthy dogs and dogs with various stages of periodontal disease. ANIMALS 51 dogs without periodontal disease (n = 12) or with mild (10), moderate (19), or severe (10) periodontal disease. PROCEDURES The whole maxillary arcade of each dog was sampled with a sterile swab, and swabs were submitted for next-generation DNA sequencing targeting the internal transcribed spacer 2 region with a commercial sequencing platform. RESULTS Fungi were detected in all samples, with a total of 320 fungal species from 135 families detected in the data set. No single fungal species was found in all samples. The 3 most frequently found fungal species were Cladosporium sp (46/51 samples), Malassezia restricta (44/51 samples), and Malassezia arunalokei (36/51 samples). Certain fungi, specifically those of the family Didymellaceae, the family Irpicaceae, and the order Pleosporales, were significantly associated with different stages of periodontitis. Mycobial analysis indicated that Cladosporium sp could be considered part of the core oral cavity mycobiome. CONCLUSIONS AND CLINICAL RELEVANCE Results highlighted that fungi are present in the oral cavity of dogs and are characterized by substantial species diversity, with different fungal communities associated with various stages of periodontal disease. The next-generation DNA sequencing used in the present study revealed substantially more species of fungi than previous culture-based studies.

scholarly journals Eutypella parasitica and Other Frequently Isolated Fungi in Wood of Dead Branches of Young Sycamore Maple (Acer pseudoplatanus) in Slovenia

Forests ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 467 ◽  
Author(s):  
Ana Brglez ◽  
Barbara Piškur ◽  
Nikica Ogris
Keyword(s):  
Species Diversity ◽  
Fungal Community ◽  
Sampling Site ◽  
Outer Part ◽  
Similarity Index ◽  
Asymptomatic Infection ◽  
Fungal Species ◽  
Acer Pseudoplatanus ◽  
Pure Cultures ◽  
Sycamore Maple

Eutypella parasitica R.W. Davidson and R.C. Lorenz is the causative agent of Eutypella canker of maple, a destructive disease of maples in Europe and North America. The fungus E. parasitica infects the trunk through a branch stub or bark wound. Because the fungal community may have an impact on infection and colonization by E. parasitica, the composition of fungi colonizing wood of dead branches of sycamore maple (Acer pseudoplatanus L.) was investigated in five sampling sites in Slovenia. Forty samples from each sampling site were collected between the November 2017 and March 2018 period. Isolations were made from the wood in the outer part of dead branches and from discoloured wood in the trunk that originated from a dead branch. Pure cultures were divided into morphotypes, and one representative culture per morphotype was selected for further molecular identification. From a total of 2700 cultured subsamples, 1744 fungal cultures were obtained, which were grouped into 212 morphotypes. The investigated samples were colonized by a broad spectrum of fungi. The most frequently isolated species were Eutypa maura (Fr.) Sacc., Eutypa sp. Tul. and C. Tul., Fusarium avenaceum (Fr.) Sacc., Neocucurbitaria acerina Wanas., Camporesi, E.B.G. Jones and K.D. Hyde and E. parasitica. In this study, we distinguished species diversity and the fungal community. There were no significant differences in the diversity of fungal species between the five sampling sites, and branch thickness did not prove to be a statistically significant factor in fungal species diversity. Nevertheless, relatively low Jaccard similarity index values suggested possible differences in the fungal communities from different sampling sites. This was confirmed by an analysis of similarities, which showed that the isolated fungal community distinctly differed between the five sampling sites and between the different isolation sources. Eutypella parasitica was isolated from all five investigated sampling sites, although Eutypella cankers were observed in only three sampling sites, indicating the possibility of asymptomatic infection.

Transmission dynamics and mechanisms of endemicity of scrapie in the UK sheep population

2008 ◽  
Vol 137 (6) ◽  
pp. 762-774 ◽  
Author(s):  
J. E. TRUSCOTT ◽  
N. M. FERGUSON
Keyword(s):  
Structural Diversity ◽  
Epidemiological Data ◽  
Transmissible Spongiform Encephalopathies ◽  
Spongiform Encephalopathies ◽  
Sheep Population ◽  
Mean Values ◽  
The United Kingdom ◽  
The Family ◽  
The Uk

SUMMARYScrapie is a fatal neurological disease of sheep which is endemic in the United Kingdom. It is one of the family of transmissible spongiform encephalopathies (TSEs) that includes BSE. In this paper, we developed a micro-simulation model for scrapie in the UK sheep population, incorporating the genetic and structural diversity of the population and infectious contact between flocks through trading. The simulation was fitted to epidemiological data from a range of sources. We found a detection/reporting probability of 16% (95% CI 12–17) for animals dying of scrapie. Prevalence of infected animals in the population was about 0·15%. Infected individuals were found in 9% of flocks overall, rising to 60% in Shetland and 75% in Swaledale flocks. Mean values of R0 for flocks varied with breed from 2·43 (Shetland) to 0·21 (Suffolk). We also examined the possible long-term persistence of scrapie in the UK flock in the absence of any intervention.

scholarly journals Incidence and characterization of Fusarium species in crown rot of bananas

2002 ◽  
Author(s):  
◽  
Kumindra Devrajh Ramsunder
Keyword(s):  
Costa Rica ◽  
Health Effects ◽  
Fusarium Species ◽  
Fungal Species ◽  
Crown Rot ◽  
Post Harvest ◽  
Adverse Health Effects ◽  
Adverse Health ◽  
Economic Significance

Fusarium species produce toxic mycotoxins that are known to exert adverse health effects in humans and animals. No attempts have been made to establish mycotoxin-producing capabilities of isolates of Fusarium species from bananas exhibiting symptoms of crown rot. Crown rot is one of the most serious post harvest problems in banana and the disease is caused by different fungal species, principally Fusarium species. Banana, which is of great economic significance in growing countries (i.e. Costa Rica, Cameroon, Ecuador) is seriously affected by crown rot and is a major cause of fruit loss

scholarly journals Ectoparasites of the bats from karst caves of the nature reserve «Ichalkovsky Bor» (Nizhny Novgorod Region)

2018 ◽  
Vol 7 (4) ◽  
pp. 122-126
Author(s):  
Galina Anatolievna Fadeeva ◽  
Elena Evgenievna Boryakova
Keyword(s):  
Natural Habitats ◽  
Karst Caves ◽  
Central Russia ◽  
The Family ◽  
Volga Upland ◽  
The Stability ◽  
The One ◽  
Parasitic Mites ◽  
First Time

The fauna of parasitic mites of bats from the karst caves in the region of the Volga Upland was studied in 2004-2005. Six species of bats such as Daubentons water bat, Brandts bat, whiskered bat, pond bat, northern bat and long-eared bat were examined. 18 species of arthropods were detected, among them there are gamasid mites (10 species) and harvest mites (2 species). Leptotrombidium russicum (Oud., 1902) and Myotrombicula sp. were found for the first time in Central Russia. Spinturnix acuminatus (Koch, 1836), Steatonyssus spinosus (Willmann, 1936), Steatonyssus periblepharus (Kolenati, 1858), Macronyssus flavus (Kolenati, 1856) turned out to be the main group of parasites in this study. As for the insects flies of the family Nycteribiidae and fleas of the family Ischnopsyllidae were found. The cluster analysis of ectoparasite fauna has showed that they are more or less evenly distributed among all members of mixed colonies of bats, while there is no violation of specificity in the choice of hosts. Low values of the Berger-Parker index marked a lack of competition between species, which indicates the stability of parasitic communities formed on bats in mixed colonies and in natural habitats. This fact indicates a complex relationship between the parasites in the community on the one hand, and long-term existence of the community on the other hand. This, in its turn, shows that in long-evolving communities competitive relationships between parasites are obliterated, which gives them stability. Herewith the bat colony is used as an integral whole, although some parasitic species prefer certain types of hosts.

scholarly journals Assessment of Genetic Diversity and Population Structure of Some Soft and Hard Wheat Varieties Based on SSR Marker

2020 ◽  
Vol 8 (3) ◽  
pp. 80-87
Author(s):  
Yousif M. Fattah ◽  
Nergiz N. Tayib
Keyword(s):  
Genetic Diversity ◽  
Gene Diversity ◽  
Polymorphic Information Content ◽  
Triticum Aestivum L ◽  
Wheat Varieties ◽  
Discriminating Power ◽  
Triticum Spp ◽  
Cultivated Species ◽  
The Common ◽  
Diversity Studies

Wheat (Triticum spp.) is one of the most important cereal crops in Iraq and the world. It includes many species and varieties.  The two major cultivated species of wheat are, durum wheat (Tritium durum Desf.) which is tetraploid (2n= 28) and the common wheat (Triticum aestivum L.) which is hexaploid (2n = 42). Ten wheat varieties from both species were examined using ten Simple   sequence repeat (SSR) markers (WMC17, WMC20, WMC21, WMC24, WMC25, WMC48, WMC50, WMC283, Xgwm11 and Xgwm626). Various genetic parameters were calculated using Power Marker V3.25 software. A total of 156 alleles were detected in both species. The gene diversity in wheat varieties from both species collectively varied from 0.85 to 1.00, which indicates considerable genetic diversity in the examined varieties. All markers used in this study were highly informative and the polymorphic information content (PIC) values were higher than 0.50 in all loci. Hence all markers are considered useful for genetic diversity studies in wheat’s populations. The dendrogram separated the populations into two main clades and many subgroups. Azadi variety was simplicifolious. This study confirms the discriminating power of SSR typing and its usefulness for comparison within hard and soft wheat populations. 

scholarly journals Stachybotriaceae on Cucurbits Demystified: Genetic Diversity and Pathogenicity of Ink Spot Pathogens

Plant Disease ◽  
2020 ◽  
Vol 104 (8) ◽  
pp. 2242-2251
Author(s):  
Gabriel Rennberger ◽  
Anthony P. Keinath
Keyword(s):  
South Carolina ◽  
Leaf Spot ◽  
Sequence Data ◽  
Spatial Scales ◽  
Fungal Species ◽  
Vegetable Crops ◽  
Tomato Plants ◽  
Predominant Species ◽  
The Family ◽  
The Common

Recently, the incidence of Myrothecium leaf spot, a foliar disease of watermelon, has increased in South Carolina. However, the identity of the fungal species responsible for outbreaks of this disease has not been determined. Sequence data from four partial gene regions were used to conduct Bayesian inference in order to identify 95 isolates of Stachybotriaceae. Isolates were collected in South Carolina between July 2015 and May 2018. In total, six species of Stachybotriaceae were identified on watermelon and two other cucurbits: Albifimbria verrucaria, Gregatothecium humicola, Paramyrothecium foliicola, P. humicola, Xenomyrothecium tongaense, and Xepicula leucotricha. Two species, G. humicola and P. foliicola, were the predominant species found. Within these two species, genetic differences within small spatial scales were detected. Five species (all except Xenomyrothecium tongaense) were tested in experiments to determine their pathogenicity and relative virulence on three hosts grown in rotation in South Carolina. Southern pea plants were less susceptible than watermelon and tomato plants, which were equally susceptible. This constitutes the first reliable report of pathogenicity of any of the five tested species of Stachybotriaceae on these three vegetable crops. Another important finding was that none of the isolates were identified as P. roridum, the species considered to be the only causal agent of Myrothecium leaf spot on cucurbits. We propose the common name “ink spot” for the foliar phase of diseases caused by genera within the family Stachybotriaceae. This name is descriptive and likely to be accepted by growers. To prevent further loss incurred by ink spot, watermelon and tomato crops should be monitored for this disease.

Effects of various soil fungi and insecticides on the capacity of Mucor alternans to degrade DDT

1972 ◽  
Vol 18 (5) ◽  
pp. 553-560 ◽  
Author(s):  
J. P. E. Anderson ◽  
E. P. Lichtenstein
Keyword(s):  
Contaminated Soils ◽  
Soil Fungi ◽  
Fungal Spores ◽  
Fungal Growth ◽  
Fungal Species ◽  
Water Soluble ◽  
Metabolite Formation ◽  
Pure Cultures ◽  
Free Media ◽  
Related Compounds

Pure cultures of the fungus Mucor alternans, isolated from DDT-contaminated soils, were able to degrade DDT to water-soluble metabolites. After the addition of fungal spores to DDT-contaminated soils, however, the insecticide-degrading capacity of the fungus was no longer evident. Since under field conditions many species of fungi are simultaneously exposed to mixed residues of pesticidal chemicals, the effects of various species of soil fungi and of various insecticides on DDT degradation by M. alternans were investigated. Experiments were conducted to study the effect of nine fungal species, their stale cell-free media, and various insecticides and related compounds on the capacity of M. alternans to degrade 14C-DDT to water-soluble metabolites. It was found that several pure fungal cultures or some cell-free media, in which mycelia had grown, could also degrade the insecticide. In most cases, however, addition of one of the various fungi to 14C-DDT-treated M. alternans cultures resulted in a total depression of the appearance of water-soluble metabolites in the media. This was due to an accumulation of the metabolites in the mycelium of the other fungus or in an inhibition of metabolite formation. Addition of stale media from various fungi to 14C-DDT-treated M. alternans cultures had various effects on fungal growth and on the capacity of the fungus to degrade the insecticide. Among the insecticides and related compounds tested only lindane, parathion, and Dyfonate caused a reduction in DDT degradation by M. alternans, without severely reducing its vegetative growth.

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