A thin line between plankton and biofilm

2020 ◽  
Author(s):  
Iztok Dogsa ◽  
Rok Kostanjsek ◽  
David Stopar

<p>Planktonic bacterial cells are by definition not aggregated. However, our previous work, where we have demonstrated the invisible mechanical connections between bacterial cells in dilute planktonic suspensions, challenged this assumption. Here we provide an experimental evidence using autocorrelation analysis of micrographs that in planktonic suspensions of <em>B. subtilis</em> a size continuum of aggregated structures is formed. In the microbial aggregates viable cells were embedded in the nucleic acid network. The eDNA was released during regular cell lysis events. To determine the size distribution of planktonic bacterial aggregates a pair-wise spatial correlations of bacterial cells in microscopic images were calculated. The monotonously decreasing shape of the autocorrelation function indicated a continuous distribution of bacterial aggregate sizes from monomer to multimers. Soft bacterial aggregates in dilute suspensions provide a missing link in a continuum of organic matter in aqueous environments and can significantly improve our understanding how non-attached biofilms form during planktonic growth.</p>

1991 ◽  
Vol 26 (2) ◽  
pp. 163-172 ◽  
Author(s):  
S.S. Rao ◽  
I.G. Droppo ◽  
C.M. Taylor ◽  
B.K. Burnison

Abstract Suspended sediment particles and bacteria because of their surface area and charge, may play a role in the binding of aquatic contaminants. Little is known, as to what degree each of these factors play in the formation of suspended aggregates. Flocculation of particles can alter their hydrodynamic properties in aquatic environments and therefore may have significant implications for contaminant transport. In this study, we examine the role dissolved organic carbon plays in the production of bacterial aggregates as a first step to gaining a better understanding of bacterial-particle interactions and suspended particulate formation. Data indicated that an order of magnitude increase in bacterial population occurred due to the utilization of algal organic matter. This increase in bacterial density was closely accompanied by an increase in the size of the median bacterial aggregate from approximately 8 µm to 16 µm. This observation suggests that there is a greater potential for the sorption of aquatic contaminants by the aggregates.


Life ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 32
Author(s):  
Walaa Elmasry ◽  
Yoko Kebukawa ◽  
Kensei Kobayashi

The extraterrestrial delivery of organics to primitive Earth has been supported by many laboratory and space experiments. Minerals played an important role in the evolution of meteoritic organic matter. In this study, we simulated aqueous alteration in small bodies by using a solution mixture of H2CO and NH3 in the presence of water at 150 °C under different heating durations, which produced amino acids after acid hydrolysis. Moreover, minerals were added to the previous mixture to examine their catalyzing/inhibiting impact on amino acid formation. Without minerals, glycine was the dominant amino acid obtained at 1 d of the heating experiment, while alanine and β-alanine increased significantly and became dominant after 3 to 7 d. Minerals enhanced the yield of amino acids at short heating duration (1 d); however, they induced their decomposition at longer heating duration (7 d). Additionally, montmorillonite enhanced amino acid production at 1 d, while olivine and serpentine enhanced production at 3 d. Molecular weight distribution in the whole of the products obtained by gel chromatography showed that minerals enhanced both decomposition and combination of molecules. Our results indicate that minerals affected the formation of amino acids in aqueous environments in small Solar System bodies and that the amino acids could have different response behaviors according to different minerals.


2021 ◽  
Vol 8 ◽  
Author(s):  
Rachel P. Martineac ◽  
Alexey V. Vorobev ◽  
Mary Ann Moran ◽  
Patricia M. Medeiros

Uncovering which biogeochemical processes have a critical role controlling dissolved organic matter (DOM) compositional changes in complex estuarine environments remains a challenge. In this context, the aim of this study is to characterize the dominant patterns of variability modifying the DOM composition in an estuary off the Southeastern U.S. We collected water samples during three seasons (July and October 2014 and April 2015) at both high and low tides and conducted short- (1 day) and long-term (60 days) dark incubations. Samples were analyzed for bulk DOC concentration, and optical (CDOM) and molecular (FT-ICR MS) compositions and bacterial cells were collected for metatranscriptomics. Results show that the dominant pattern of variability in DOM composition occurs at seasonal scales, likely associated with the seasonality of river discharge. After seasonal variations, long-term biodegradation was found to be comparatively more important in the fall, while tidal variability was the second most important factor correlated to DOM composition in spring, when the freshwater content in the estuary was high. Over shorter time scales, however, the influence of microbial processing was small. Microbial data revealed a similar pattern, with variability in gene expression occurring primarily at the seasonal scale and tidal influence being of secondary importance. Our analyses suggest that future changes in the seasonal delivery of freshwater to this system have the potential to significantly impact DOM composition. Changes in residence time may also be important, helping control the relative contribution of tides and long-term biodegradation to DOM compositional changes in the estuary.


2011 ◽  
Vol 2011 ◽  
pp. 1-12 ◽  
Author(s):  
Satya Prakash ◽  
Catherine Tomaro-Duchesneau ◽  
Shyamali Saha ◽  
Arielle Cantor

The gut microbiota plays a crucial role in maintaining health. Alterations of the gut bacterial population have been associated with a number of diseases. Past and recent studies suggest that one can positively modify the contents of the gut microbiota by introducing prebiotics, probiotics, synbiotics, and other therapeutics. This paper focuses on probiotic modulation of the gut microbiota by their delivery to the lower gastrointestinal tract (GIT). There are numerous obstacles to overcome before microorganisms can be utilized as therapeutics. One important limitation is the delivery of viable cells to the lower GIT without a significant loss of cell viability and metabolic features through the harsh conditions of the upper GIT. Microencapsulation has been shown to overcome this, with various types of microcapsules available for resolving this limitation. This paper discusses the gut microbiota and its role in disease, with a focus on microencapsulated probiotics and their potentials and limitations.


2012 ◽  
Vol 30 (No. 2) ◽  
pp. 178-187 ◽  
Author(s):  
Z. Jaglic ◽  
D. Červinková ◽  
H. Vlková ◽  
E. Michu ◽  
G. Kunová ◽  
...  

This study evaluated the susceptibility of planktonic and biofilm cells of Staphylococcus spp. (n = 87), Klebsiella spp. (n = 30), and Escherichia coli (n = 74) isolates originating from food contact surfaces of milk and meat processing plants to benzalkonium chloride (BAC), sodium hypochlorite (NaClO), chloramine B (CAB), and peracetic acid (PAA). Bacterial growth and reduction of viable cells in the presence of disinfectants were determined in tryptone soya broth (TSB) and water, respectively. Biofilm positive isolates (n = 73) were tested for the presence of selected qac genes. Unlike BAC, chlorine‑based disinfectants and PAA were poorly efficient in TSB, especially in the case of biofilms. However, when tested in water, the efficacy of NaClO, CAB and PAA substantially increased, which was particularly evident in biofilms. In water, staphylococcal biofilms were even more susceptible to CAB than planktonic cells. A part (23.3%) of the biofilm positive staphylococci carried the qac genes but did not express an increased resistance to BAC. This study showed that bacterial biofilms protected with organic matter could be one of the main reasons for disinfection failure.  


2013 ◽  
Vol 19 (S4) ◽  
pp. 23-24 ◽  
Author(s):  
A.J. Anjos ◽  
P. Nolasco ◽  
J.M. Aquino Marques ◽  
F. Cabrita ◽  
M.F.C. Pereira ◽  
...  

The oral cavity is susceptible to several calcifications such as salivary calculi (sialoliths), dental calculus (tartar) and tonsillar concretions (tonsilloliths). Although several individual studies had been already carried out, a comprehensive morphological and elemental comparison between them is still missing.Sialoliths are most commonly found in the submandibular glands and are composed of regions rich in Ca and P minerals, namely hydroxyapatite, whitlockite and brushite, and regions consisting of organic matter with high-sulphur content. These regions are organized in alternating concentric layers. Several bacterial species have also been identified in sialoliths microstructure showing that infection occurs recurrently throughout the stone formation.Generally, tartar presents an inorganic structure rich in Ca and P minerals, such as brushite, octacalcium phosphate, hydroxyapatite and whitlockite, and an organic matrix, mainly constituted by aerobic bacteria and yeast or just anaerobic bacteria.Tonsilloliths occur most commonly on the crypts of the palatal tonsils and are composed of a mixture of organic matter, namely bacterial cells and epithelial debris, as well as inorganic material rich in Ca and P minerals such as hydroxyapatite. Volatile sulphur compounds produced by anaerobic bacteria are usually associated to these, in general, innocuous structures.The current study involved the ultrastructure and chemical characterization of the calcified structures by scanning electron microscopy (SEM) combined with energy dispersive spectroscopy carried out with a JEOL JSM 7001F instrument with an INCA pentaFetx3 Oxford spectrometer operated at 15 kV. Higher resolution characterization has been performed by transmission electron microscopy (TEM) using a H8100 Hitachi instrument operated at 200 kV. SEM samples were prepared following metallographic procedures, whereas TEM samples were obtained following standard biological sample preparation procedures.The results show that sialoliths present the most complex structure, with a central core surrounded by concentric layers, while tartar and tonsilloliths do not have a distinctive architecture (Figures 1 (a), 2 (a) and 3 (a). At higher magnifications, layered structures, as well as crystals could be found in sialoliths and tartar (Figures 1 (b) and 2 (b). Bacteria were common in all the calcified structures, although in tonsilloliths their abundance is higher (Figure 3 (b)). All calcifications have similar elemental constitution, with Ca and P, indicating the presence of calcium phosphates (Figures 1 (c), 2 (c) and 3 (c). Sulphur was also found associated with the organic matter in sialoliths and tonsilloliths, though the amounts found in the latter were much smaller than initially expected.Based on the similarities found, new correlations between these calcification will be available. For instance, the mineralization process described in tartar can help understand the similar processes occurring in sialoliths and tonsilloliths, while the association between bacteria and sulphur in tonsilloliths can be a clue for their presence in sialoliths.The work was carried out with financial support of the Portuguese Foundation for Science and Technology through PTDC/SAU-ENB/111941/2009 and PEst-OE/CTM-UI0084/2011 grants.


2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Diplina Paul ◽  
Praveen Kolar ◽  
Steven G. Hall

AbstractThe ongoing severe acute respiratory syndrome-coronavirus (SARS-CoV-2) has triggered the coronavirus pandemic (COVID-19) that has claimed hundreds of thousands of lives worldwide. This virus spreads predominantly by human-to-human transmission via respiratory droplets. However, the presence of this virus in the fecal and anal swabs of infected patients has triggered the need for research into its waterborne transmission. The various environmental factors that impact the persistence of coronavirus in different water matrices include temperature, UV exposure, organic matter, disinfectants as well as adversarial microorganisms. This review summarizes the most recent research data on the effect of various factors on coronavirus in aqueous environments. The available data suggest that: (i) increasing temperature decreases the overall persistence of the virus; (ii) the presence of organic matter can increase the survivability of coronavirus; (iii) chlorine is the most effective and economic disinfectant; (iv) membrane bioreactors in wastewater treatment plants are hosts of competitive microorganisms that can inactivate coronaviruses; (v) ultraviolet irradiation is another effective option for virus inactivation. However, the inactivation disinfection kinetics of coronaviruses are yet to be fully understood. Thus, further research is needed to understand its fate and transport with respect to the water cycle so that effective strategies can be adopted to curb its effects. These strategies may vary based on geographic, climatic, technical, and social conditions around the globe. This paper explores possible approaches and especially the conditions that local communities and authorities should consider to find optimal solutions that can limit the spread of this virus.


2020 ◽  
Author(s):  
Eva Lehndorff ◽  
Nele Meyer ◽  
Andrey Radionov ◽  
Lutz Plümmer ◽  
Peter Rottmann ◽  
...  

<p>The physical arrangement of soil compounds in microaggregates is important in many ways, e.g. by controlling soil stability and C sequestration. However, little is known about the spatial arrangement of organic and inorganic compounds in soil microaggregates, due to the lack of in-situ analyses in undisturbed material. Here we hypothesize that microaggregates are spatially organized, resulting in deterministic, predictable spatial patterns of different organic matter and mineral phases and that this organization depends on the abundance of specific phases such as on clay mineral content. We separated the water stable, occluded large and small microaggregate fractions from Ap horizons of a sequence of sandy to loamy Luvisols (19 to 35% clay, Scheyern, Germany) and subjected in total 60 individual aggregates to elemental mapping by electron probe micro analysis (EPMA), which recorded C, N, P, Al, Fe, Ca, K, Cl, and Si contents at µm scale resolution. Spatial arrangements of soil organic matter and soil minerals were extracted using cluster analyses. We found a pronounced heterogeneity in aggregate structure and composition, which was not reproducible and largely independent from clay content in soil. However, neighborhood analyses revealed close spatial correlations between organic matter debris (C:N app. 100:10) and microbial organic matter (C:N app. 10:1) indicating a spatial relationship between source and consumer. There was no systematic relationship between soil minerals and organic matter, suggesting that well-established macroscale correlations between contents of pedogenic oxides and clay minerals with soil organic matter storage do not apply to soil microaggregates.</p>


1951 ◽  
Vol 34 (5) ◽  
pp. 573-582
Author(s):  
Paul H. Kopper ◽  

Formaldehyde is reduced to methyl alcohol by living cells of a creatinine-decomposing strain of Pseudomonas aeruginosa. The amount of HCHO taken up in 30 minutes by 3 x 1010 cells of this organism is termed its reducing capacity. It was found to be 400 to 480 µg. The reaction takes place over wide pH and temperature ranges, is independent of the concentration of formaldehyde as long as the latter is not high enough to exert a toxic effect on the cell, but depends on the number of bacteria present. In cultures, 3 to 7 days old, there is a decline in reducing capacity without a proportionate decrease in the number of viable cells. On the other hand in cultures, 2 to 4 weeks old, the number of viable cells determines the amount of HCHO taken up. N/100 NaOH depresses the reducing capacity of the organism without affecting bacterial viability. Exposure of bacterial suspensions to temperatures of 46–52°C. for 10 minutes causes a far more rapid decrease in the number of viable cells than in reducing capacity. Incubation of cellular suspensions with nutrient substances, which are able to support adequately the growth of the organism, for 30 minutes prior to the addition of HCHO, induces increases in reducing capacity. The uptake of HCHO by different microorganisms seems to be related to their gaseous and nutritional requirements. Strains of P. aeruginosa and P. fluorescens are predominantly aerobic, least fastidious in their nutritional requirements, most active against HCHO, and least susceptible to the action of aureomycin and chloromycetin. The potential significance of cellular reducing capacity is discussed.


2019 ◽  
Author(s):  
Pin Su ◽  
Deyong Zhang ◽  
Zhuo Zhang ◽  
Ang Chen ◽  
Muhammad Rizwan Hamid ◽  
...  

AbstractAlthough many biocontrol bacteria can be used to improve plant tolerance to stresses and to promote plant growth, the hostile environmental conditions on plant phyllosphere and the limited knowledge on bacterial colonization on plant phyllosphere minimized the beneficial effects produced by the biocontrol bacteria.Rhodopseudomonas palustrisstrain GJ-22 is known as a phyllosphere biocontrol agent. In this paper we described detailed processes of strain GJ-22 colony establishment at various colonization stages. We have shown that the preferable location sites of bacterial aggregates on leaf phyllosphere are grooves between plant epidermal cells. In this study, we categorized bacterial colonies into four phases. Analyses of expressions of plant defense-related genes showed that, starting from Phase III, bacterial cells in the Type 3 and Type 4 colonies started produce unidentified signals to induce host defense againTobacco mosaic virusinfection. To our knowledge, this is the first report focused on the colonization process of a phyllosphere biocontrol agent.


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