bioenergetic model
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2022 ◽  
Author(s):  
Patrick Fissler ◽  
R. Nehir Mavioglu ◽  
Maya Wenzel ◽  
Steffen Stoewer ◽  
Wanja Wolff ◽  
...  

Decomposing the structure of human cerebral function in its domains, such as affect regulation or cognition, forms the backbone of psychiatric diagnosis and treatment. Research continues to decipher the domains and hierarchical structure of cerebral function. So far, the findings strongly suggest two higher-order latent factors of general psychopathology (p factor) and general intelligence (g factor). Both general factors are functions of the same organ, covary, share risk factors as well as biomarkers, and benefit from the same treatments. However, to our knowledge, a model that connects both components of cerebral function within a higher-order latent factor and describes its potential biological underpinning is lacking. First, we suggest the general factor of cerebral function (c factor) as the shared variance of the measures of g and p in a bi-factor model. Second, we propose and provide evidence that mitochondrial bioenergetics (MB) is one core biological underpinning of c. Third, we describe how this c factor mito-bioenergetics (CMB) model may transform research and clinical practice by advancing knowledge of treatment effects, risk factors, biomarkers and clinical outcomes. Finally, we present a CMB model-based hypothesis stating that fatigue—as a phenotypical correlate of MB—directly loads on c.


2021 ◽  
Vol 12 ◽  
Author(s):  
Julius Lidar ◽  
Erik P. Andersson ◽  
David Sundström

Purpose: To develop a method for individual parameter estimation of four hydraulic-analogy bioenergetic models and to assess the validity and reliability of these models’ prediction of aerobic and anaerobic metabolic utilization during sprint roller-skiing.Methods: Eleven elite cross-country skiers performed two treadmill roller-skiing time trials on a course consisting of three flat sections interspersed by two uphill sections. Aerobic and anaerobic metabolic rate contributions, external power output, and gross efficiency were determined. Two versions each (fixed or free maximal aerobic metabolic rate) of a two-tank hydraulic-analogy bioenergetic model (2TM-fixed and 2TM-free) and a more complex three-tank model (3TM-fixed and 3TM-free) were programmed into MATLAB. The aerobic metabolic rate (MRae) and the accumulated anaerobic energy expenditure (Ean,acc) from the first time trial (STT1) together with a gray-box model in MATLAB, were used to estimate the bioenergetic model parameters. Validity was assessed by simulation of each bioenergetic model using the estimated parameters from STT1 and the total metabolic rate (MRtot) in the second time trial (STT2).Results: The validity and reliability of the parameter estimation method based on STT1 revealed valid and reliable overall results for all the four models vs. measurement data with the 2TM-free model being the most valid. Mean differences in model-vs.-measured MRae ranged between -0.005 and 0.016 kW with typical errors between 0.002 and 0.009 kW. Mean differences in Ean,acc at STT termination ranged between −4.3 and 0.5 kJ and typical errors were between 0.6 and 2.1 kJ. The root mean square error (RMSE) for 2TM-free on the instantaneous STT1 data was 0.05 kW for MRae and 0.61 kJ for Ean,acc, which was lower than the other three models (all P < 0.05). Compared to the results in STT1, the validity and reliability of each individually adapted bioenergetic model was worse during STT2 with models underpredicting MRae and overpredicting Ean,acc vs. measurement data (all P < 0.05). Moreover, the 2TM-free had the lowest RMSEs during STT2.Conclusion: The 2TM-free provided the highest validity and reliability in MRae and Ean,acc for both the parameter estimation in STT1 and the model validity and reliability evaluation in the succeeding STT2.


2021 ◽  
Vol 8 ◽  
Author(s):  
Christopher L. Lawson ◽  
Matthew D. Taylor ◽  
James A. Smith ◽  
Nicholas L. Payne ◽  
Jayson M. Semmens ◽  
...  

Consumption is the primary trophic interaction in ecosystems and its accurate estimation is required for reliable ecosystem modeling. When estimating consumption, species’ diets are commonly assumed to be the average of those that occur among habitats, seasons, and life stages which introduces uncertainty and error into consumption rate estimates. We present a case study of a teleost (Yellowfin Bream Acanthopagrus australis) that quantifies the potential error in consumption (in mass) and growth rate estimates when using diet data from different regions and times and ignoring ontogenetic variability. Ontogenetic diet trends were examined through gut content analysis (n = 1,130 fish) and incorporated into a bioenergetic model (the “primary” model) that included diet variability (n = 144 prey sources) and ontogenetic changes in metabolism (1–7 year) to estimate lifetime consumption. We quantified error by building nine model scenarios that each incorporated different spatiotemporal diet data of four published studies. The model scenarios produced individual lifetime consumption estimates that were between 25% lower and 15% higher than the primary model (maximum difference was 53%, range 11.7–17.8 kg). When consumption (in mass) was held constant, differences in diet quality among models caused a several-fold range in growth rate (0.04–1.07 g day–1). Our findings showcase the large uncertainty in consumption rate estimates due to diet diversity, and illustrate that caution is required when considering bioenergetic results among locations, times, and ontogeny.


Author(s):  
Meredith McClure ◽  
Sarah Olson ◽  
Catherine Haase ◽  
Liam McGuire ◽  
C. Hranac ◽  
...  

Climate change and disease are threats to biodiversity that may compound and interact with one another in ways that are difficult to predict. White-nose syndrome (WNS), caused by a cold-loving fungus (Pseudogymnoascus destructans), has had devastating impacts on North American hibernating bats, and impact severity has been linked to hibernaculum microclimate conditions. As WNS spreads across the continent and climate conditions change, anticipating these stressors’ combined impacts may improve conservation outcomes for bats. We build on the recent development of winter species distribution models for five North American bat species, which used a hybrid correlative-mechanistic approach to integrate spatially explicit winter survivorship estimates from a bioenergetic model of hibernation physiology. We apply this bioenergetic model given the presence of P. destructans , including parameters capturing its climate-dependent growth as well as its climate-dependent effects on host physiology, under both current climate conditions and scenarios of future climate change. We then update species distribution models with the resulting survivorship estimates to predict changes in winter hibernacula suitability under future conditions. Exposure to P. destructans is generally projected to decrease bats’ winter occurrence probability, but in many areas, changes in climate are projected to lessen the detrimental impacts of WNS. This rescue effect is not predicted for all species or geographies and may arrive too late to benefit many hibernacula. However, our findings offer hope that proactive conservation strategies to minimize other sources of mortality could allow bat populations exposed to P. destructans to persist long enough for conditions to improve.


Author(s):  
Gabriel J. Rossi ◽  
Mary E. Power ◽  
Shelley Pneh ◽  
Jason R Neuswanger ◽  
Timothy J. Caldwell

Salmonids frequently adapt their feeding and movement strategies to cope with seasonally fluctuating stream environments. Oncorhynchus mykiss tend to drift-forage in higher velocity habitat than other salmonids, yet their presence in streams with seasonally low velocity and drift suggests behavioral flexibility. We combined 3-D videogrammetry with measurements of invertebrate drift and stream hydraulics to investigate the drivers of O. mykiss foraging mode and movement during the seasonal recession in a California stream. From May to July (2016), foraging movement rate increased as prey concentration and velocity declined; however, movement decreased in August as pools became low and still. In May, 80% of O. mykiss were drift-foraging, while by July, over 70% used search or benthic-foraging modes. Velocity and riffle crest depth were significant predictors of foraging mode, while drift concentration was a poor univariate predictor. However top ranked additive models included both hydraulic variables and drift concentration. A drift-foraging bioenergetic model was a poor predictor of foraging mode. We suggest that infall and benthic prey, as well as risk aversion, may influence late-summer foraging decisions.


Author(s):  
Etsuko Nonaka ◽  
Anna Kuparinen

1. Almost all organisms grow in size during their lifetime and switch diets, trophic positions, and interacting partners as they grow. Such ontogenetic development introduces life-history stages and flows of biomass between the stages through growth and reproduction. However, current research on complex food webs rarely considers life-history stages. The few previously proposed methods do not take full advantage of the existing food web structural models that can produce realistic food web topologies. 2. We extended the niche model by Williams & Martinez (2000) to generate food webs that included trophic species with a life-history stage structure. Our method aggregated trophic species based on niche overlap to form a life-history structured population; therefore, it largely preserved the topological structure of food webs generated by the niche model. We applied the theory of allometric predator-prey body mass ratio and parameterized an allometric bioenergetic model augmented with biomass flow between stages via growth and reproduction to study the effects of a stage structure on the stability of food webs. 3. When life-history stages were linked via growth and reproduction, fewer food webs persisted while persisting food webs tended to retain more trophic species. Topological differences between persisting linked and unlinked food webs were small to modest. Temporal variability of biomass dynamics and slopes of biomass spectra were lower in the linked food webs than the unlinked ones, suggesting that a life-history stage structure enhanced stability of complex food webs. 4. Our results suggest a positive relationship between the complexity and stability of complex food webs. A life-history stage structure in food webs may play important roles in dynamics of and diversity in food webs.


2021 ◽  
Vol 657 ◽  
pp. 223-239
Author(s):  
J Acevedo ◽  
J Urbán

Knowing the biomass of prey consumed by a marine predator is a prerequisite for assessing the potential of the predator for competition with fisheries. Here, we estimated the biomass of Fuegian sprat Sprattus fueguensis consumed annually by a small subpopulation of humpback whales Megaptera novaeangliae in the Magellan Strait feeding area. We used a velocity-dependent bioenergetic model that integrates annual energy requirements by sex, age class, and reproductive status, proportion of Fuegian sprat in the diet, and annual population size of whales. The annual energy required in kcal per individual whale was estimated to be 18.88 × 107 for calves, 27.92 × 107 for adults, 30.71 × 107 for pregnant females, and 42.59 × 107 for lactating females. These estimates result in an energy requirement of 19.32 × 109 and 23.41 × 109 for a seasonal abundance of 78 and 96 whales, respectively. Bayesian dietary mixing models predict that Fuegian sprat represented between 27 and 33% of the diet of the whales. This implies that humpback whales remove between 2965 and 3896 t of Fuegian sprat per year during a feeding period of 120 d. However, if estimates are extended to an abundance of 204 humpback whales during the period 2004-2017, the consumption is elevated to 8167-8383 t yr-1. The estimates provided here are useful to apply as input data for consumption by humpback whales in the Fuegian sprat fishery management as well as for conservation plans of this small and vulnerable feeding subpopulation of humpback whales.


2020 ◽  
pp. jeb.233379
Author(s):  
Francis T. C. Pan ◽  
Scott L. Applebaum ◽  
Donal T. Manahan

Changes in environmental temperature impact rate processes at all levels of biological organization. Yet, the thermal sensitivity of specific physiological processes that impact allocation of the ATP pool within a species is less well understood. In this study of developmental stages of the Pacific oyster, Crassostrea gigas, thermal sensitivities were measured for growth, survivorship, protein synthesis, respiration, and transport of amino acids and ions. At warmer temperatures, larvae grew faster but suffered increased mortality. An analysis of temperature sensitivity (Q10 values) revealed that protein synthesis, the major ATP-consuming process in larvae of C. gigas, is more sensitive to temperature change (Q10 value of 2.9±0.18) than is metabolic rate (Q10 of 2.0±0.15). Ion transport by Na+/K+-ATPase measured in vivo has a Q10 value of 2.1±0.09. The corresponding value for glycine transport is 2.4±0.23. Differing thermal responses for protein synthesis and respiration result in a disproportional increase in the allocation of available ATP to protein synthesis with rising temperature. A bioenergetic model is presented illustrating how changes in growth and temperature impact allocation of the ATP pool. Over an environmentally relevant temperature range for this species, the proportion of the ATP pool allocated to protein synthesis increases from 35% to 65%. The greater energy demand to support protein synthesis with increasing temperature will compromise energy availability to support other essential physiological processes. Defining the tradeoffs of ATP demand will provide insights into understanding the adaptive capacity of organisms to respond to various scenarios of environmental change.


2020 ◽  
Vol 17 (171) ◽  
pp. 20200588
Author(s):  
P. M. Higgins ◽  
C. S. Cockell

In order to grow, reproduce and evolve life requires a supply of energy and nutrients. Astrobiology has the challenge of studying life on Earth in environments which are poorly characterized or extreme, usually both, and predicting the habitability of extraterrestrial environments. We have developed a general astrobiological model for assessing the energetic and nutrient availability of poorly characterized environments to predict their potential biological productivity. NutMEG (nutrients, maintenance, energy and growth) can be used to estimate how much biomass an environment could host, and how that life might affect the local chemistry. It requires only an overall catabolic reaction and some knowledge of the local environment to begin making estimations, with many more customizable parameters, such as microbial adaptation. In this study, the model was configured to replicate laboratory data on the growth of methanogens. It was used to predict the effect of temperature and energy/nutrient limitation on their microbial growth rates, total biomass levels, and total biosignature production in laboratory-like conditions to explore how it could be applied to astrobiological problems. As temperature rises from 280 to 330 K, NutMEG predicts exponential drops in final biomass ( 10 9 − 10 6   cells   l − 1 ) and total methane production ( 62 − 3   μ M ) despite an increase in peak growth rates ( 0.007 − 0.14   h − 1 ) for a typical methanogen in ideal conditions. This is caused by the increasing cost of microbial maintenance diverting energy away from growth processes. Restricting energy and nutrients exacerbates this trend. With minimal assumptions NutMEG can reliably replicate microbial growth behaviour, but better understanding of the synthesis and maintenance costs life must overcome in different extremes is required to improve its results further. NutMEG can help us assess the theoretical habitability of extraterrestrial environments and predict potential biomass and biosignature production, for example on exoplanets using minimum input parameters to guide observations.


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